ISMARA results: Meis1

Project

GSE53960: rat RNA-Seq transcriptomic Bodymap

Navigation

Downloads

Results for Meis1

Z-value: 1.18

Motif logo

Transcription factors associated with Meis1

Gene Symbol	Gene ID	Gene Info
Meis1 NCBI RGD Ensembl	ENSRNOG00000004606	Meis homeobox 1

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Meis1	rn6_v1_chr14_-_103321270_103321270	-0.19	6.6e-04	Click!

Activity profile of Meis1 motif

Sorted Z-values of Meis1 motif

Top targets:

Search:

Show entries

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr13_-_80862963 Show fit	67.58	ENSRNOT00000004864	Fmo3 NCBI RGD Ensembl Show fit	flavin containing monooxygenase 3
chr20_-_45024315 Show fit	60.71	ENSRNOT00000066856	RGD1304770 NCBI RGD Ensembl Show fit	similar to Na+ dependent glucose transporter 1
chr9_+_4817854 Show fit	47.08	ENSRNOT00000040879	LOC100910526 NCBI RGD Ensembl Show fit	sulfotransferase 1C2-like
chr8_-_49109981 Show fit	46.51	ENSRNOT00000019933	Ttc36 NCBI RGD Ensembl Show fit	tetratricopeptide repeat domain 36
chr5_+_33784715 Show fit	42.81	ENSRNOT00000035685	Slc7a13 NCBI RGD Ensembl Show fit	solute carrier family 7 member 13
chr19_+_15094309 Show fit	42.12	ENSRNOT00000083500	Ces1f NCBI RGD Ensembl Show fit	carboxylesterase 1F
chr9_+_4094995 Show fit	41.77	ENSRNOT00000089450	LOC100910057 NCBI RGD Ensembl Show fit	sulfotransferase 1C2-like
chrX_-_1848904 Show fit	34.79	ENSRNOT00000010984	Rgn NCBI RGD Ensembl Show fit	regucalcin
chr14_+_22517774 Show fit	32.71	ENSRNOT00000047655	Ugt2b37 NCBI RGD Ensembl Show fit	UDP-glucuronosyltransferase 2 family, member 37
chr8_+_115150514 Show fit	32.06	ENSRNOT00000016504	Abhd14b NCBI RGD Ensembl Show fit	abhydrolase domain containing 14b

Showing 1 to 10 of 200 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of Meis1

View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
2.6	84.7	GO:0035428	hexose transmembrane transport(GO:0035428) glucose transmembrane transport(GO:1904659)
2.3	83.7	GO:0017144	drug metabolic process(GO:0017144)
0.1	83.0	GO:0050911	detection of chemical stimulus involved in sensory perception of smell(GO:0050911)
4.3	68.4	GO:0051923	sulfation(GO:0051923)
1.1	44.7	GO:1902475	L-alpha-amino acid transmembrane transport(GO:1902475)
1.4	37.8	GO:0006099	tricarboxylic acid cycle(GO:0006099)
11.6	34.8	GO:1903630	regulation of aminoacyl-tRNA ligase activity(GO:1903630)
4.0	32.3	GO:0007262	STAT protein import into nucleus(GO:0007262)
3.4	27.4	GO:0030321	transepithelial chloride transport(GO:0030321)
5.4	27.1	GO:0038044	transforming growth factor-beta secretion(GO:0038044)

Showing 1 to 10 of 140 entries

Gene overrepresentation in cellular component category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	163.6	GO:0070062	extracellular exosome(GO:0070062)
0.0	79.6	GO:0016021	integral component of membrane(GO:0016021)
0.1	77.8	GO:0005789	endoplasmic reticulum membrane(GO:0005789)
0.0	54.7	GO:0005739	mitochondrion(GO:0005739)
0.6	42.7	GO:0005788	endoplasmic reticulum lumen(GO:0005788)
6.3	31.5	GO:0045252	oxoglutarate dehydrogenase complex(GO:0045252)
0.5	29.3	GO:0034707	chloride channel complex(GO:0034707)
1.4	24.3	GO:0016471	vacuolar proton-transporting V-type ATPase complex(GO:0016471)
0.2	24.3	GO:0043296	apical junction complex(GO:0043296)
0.1	23.0	GO:0042579	peroxisome(GO:0005777) microbody(GO:0042579)

Showing 1 to 10 of 69 entries

Gene overrepresentation in molecular function category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
2.6	84.7	GO:0005355	glucose transmembrane transporter activity(GO:0005355)
0.5	73.8	GO:0052689	carboxylic ester hydrolase activity(GO:0052689)
5.6	67.6	GO:0004499	N,N-dimethylaniline monooxygenase activity(GO:0004499)
1.8	56.9	GO:0015020	glucuronosyltransferase activity(GO:0015020)
0.1	56.4	GO:0005549	odorant binding(GO:0005549)
3.0	51.6	GO:0042813	Wnt-activated receptor activity(GO:0042813)
0.8	46.3	GO:0008146	sulfotransferase activity(GO:0008146)
0.5	34.5	GO:0015179	L-amino acid transmembrane transporter activity(GO:0015179)
10.5	31.5	GO:0004591	oxoglutarate dehydrogenase (succinyl-transferring) activity(GO:0004591)
0.3	30.5	GO:0005178	integrin binding(GO:0005178)

Showing 1 to 10 of 119 entries

Gene overrepresentation in curated gene sets: canonical pathways category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.5	35.6	PID AJDISS 2PATHWAY	Posttranslational regulation of adherens junction stability and dissassembly
1.3	27.1	PID INTEGRIN5 PATHWAY	Beta5 beta6 beta7 and beta8 integrin cell surface interactions
1.4	26.9	PID ERBB NETWORK PATHWAY	ErbB receptor signaling network
0.9	24.8	PID WNT SIGNALING PATHWAY	Wnt signaling network
0.3	18.8	PID FGF PATHWAY	FGF signaling pathway
0.3	13.7	PID RXR VDR PATHWAY	RXR and RAR heterodimerization with other nuclear receptor
0.2	13.1	PID TAP63 PATHWAY	Validated transcriptional targets of TAp63 isoforms
0.3	12.1	PID SYNDECAN 4 PATHWAY	Syndecan-4-mediated signaling events
0.2	10.2	PID BMP PATHWAY	BMP receptor signaling
0.1	8.2	PID AP1 PATHWAY	AP-1 transcription factor network

Showing 1 to 10 of 25 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
1.3	67.6	REACTOME PHASE1 FUNCTIONALIZATION OF COMPOUNDS	Genes involved in Phase 1 - Functionalization of compounds
1.0	33.6	REACTOME TIGHT JUNCTION INTERACTIONS	Genes involved in Tight junction interactions
1.9	26.9	REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS	Genes involved in Bile salt and organic anion SLC transporters
1.3	26.9	REACTOME SHC1 EVENTS IN EGFR SIGNALING	Genes involved in SHC1 events in EGFR signaling
0.9	24.3	REACTOME INSULIN RECEPTOR RECYCLING	Genes involved in Insulin receptor recycling
1.3	24.2	REACTOME GLUCURONIDATION	Genes involved in Glucuronidation
0.8	24.0	REACTOME SULFUR AMINO ACID METABOLISM	Genes involved in Sulfur amino acid metabolism
0.2	19.8	REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS	Genes involved in Class B/2 (Secretin family receptors)
0.7	18.8	REACTOME FGFR LIGAND BINDING AND ACTIVATION	Genes involved in FGFR ligand binding and activation
0.2	16.7	REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY	Genes involved in Nuclear Receptor transcription pathway

Showing 1 to 10 of 46 entries

Results for Meis1

Z-value: 1.18

Motif logo

Transcription factors associated with Meis1

Activity-expression correlation:

Activity profile of Meis1 motif

Sorted Z-values of Meis1 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of Meis1

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: canonical pathways category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: