ISMARA results: Junb

Project

GSE53960: rat RNA-Seq transcriptomic Bodymap

Navigation

Downloads

Results for Junb_Jund

Z-value: 2.55

Motif logo

Transcription factors associated with Junb_Jund

Gene Symbol	Gene ID	Gene Info
Junb NCBI RGD Ensembl	ENSRNOG00000042838	JunB proto-oncogene, AP-1 transcription factor subunit
Jund NCBI RGD Ensembl	ENSRNOG00000019568	JunD proto-oncogene, AP-1 transcription factor subunit

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Junb	rn6_v1_chr19_-_26094756_26094756	-0.36	3.3e-11	Click!
Jund	rn6_v1_chr16_-_20486707_20486707	0.00	9.6e-01	Click!

Activity profile of Junb_Jund motif

Sorted Z-values of Junb_Jund motif

Top targets:

Search:

Show entries

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr3_+_150801289 Show fit	240.28	ENSRNOT00000035060	Map1lc3a NCBI RGD Ensembl Show fit	microtubule-associated protein 1 light chain 3 alpha
chr15_+_43007908 Show fit	171.05	ENSRNOT00000084753 ENSRNOT00000091567 ENSRNOT00000087709	Stmn4 NCBI RGD Ensembl Show fit	stathmin 4
chr8_-_115263484 Show fit	152.65	ENSRNOT00000039696 ENSRNOT00000081138	Iqcf3 NCBI RGD Ensembl Show fit	IQ motif containing F3
chr6_+_28515025 Show fit	152.46	ENSRNOT00000088033 ENSRNOT00000005317 ENSRNOT00000081141	Dnajc27 NCBI RGD Ensembl Show fit	DnaJ heat shock protein family (Hsp40) member C27
chr4_+_174181644 Show fit	147.00	ENSRNOT00000011555	Capza3 NCBI RGD Ensembl Show fit	capping actin protein of muscle Z-line alpha subunit 3
chr5_-_146446227 Show fit	146.93	ENSRNOT00000044868	Hmgb4 NCBI RGD Ensembl Show fit	high-mobility group box 4
chr5_+_59452348 Show fit	144.25	ENSRNOT00000019887	Ccin NCBI RGD Ensembl Show fit	calicin
chr2_+_164549455 Show fit	142.83	ENSRNOT00000017151	Mlf1 NCBI RGD Ensembl Show fit	myeloid leukemia factor 1
chr1_-_169334093 Show fit	141.94	ENSRNOT00000032587	Ubqln3 NCBI RGD Ensembl Show fit	ubiquilin 3
chr5_-_140024176 Show fit	137.98	ENSRNOT00000016492	Tmco2 NCBI RGD Ensembl Show fit	transmembrane and coiled-coil domains 2

Showing 1 to 10 of 200 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of Junb_Jund

View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
3.6	277.3	GO:0030317	sperm motility(GO:0030317)
20.4	265.7	GO:0007342	fusion of sperm to egg plasma membrane(GO:0007342)
16.0	240.3	GO:0010040	response to iron(II) ion(GO:0010040)
10.8	183.6	GO:0006662	glycerol ether metabolic process(GO:0006662)
1.2	176.0	GO:0042787	protein ubiquitination involved in ubiquitin-dependent protein catabolic process(GO:0042787)
1.2	147.4	GO:0007286	spermatid development(GO:0007286)
5.9	147.0	GO:0051016	barbed-end actin filament capping(GO:0051016)
3.5	145.8	GO:0046825	regulation of protein export from nucleus(GO:0046825)
1.7	139.1	GO:0031110	regulation of microtubule polymerization or depolymerization(GO:0031110)
14.4	129.4	GO:2000344	positive regulation of acrosome reaction(GO:2000344)

Showing 1 to 10 of 254 entries

Gene overrepresentation in cellular component category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
31.1	529.3	GO:0035686	sperm fibrous sheath(GO:0035686)
4.1	423.6	GO:0001669	acrosomal vesicle(GO:0001669)
16.0	240.3	GO:0044754	autolysosome(GO:0044754)
1.0	231.5	GO:0030141	secretory granule(GO:0030141)
0.9	185.9	GO:0045211	postsynaptic membrane(GO:0045211)
1.1	182.4	GO:0030426	growth cone(GO:0030426)
1.8	180.4	GO:0031514	motile cilium(GO:0031514)
8.0	160.2	GO:0043196	varicosity(GO:0043196)
6.5	156.9	GO:0001673	male germ cell nucleus(GO:0001673)
2.0	147.9	GO:0031463	Cul3-RING ubiquitin ligase complex(GO:0031463)

Showing 1 to 10 of 134 entries

Gene overrepresentation in molecular function category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
2.3	419.6	GO:0005516	calmodulin binding(GO:0005516)
1.0	319.9	GO:0015631	tubulin binding(GO:0015631)
24.0	240.3	GO:0008429	phosphatidylethanolamine binding(GO:0008429)
58.8	235.1	GO:0004365	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity(GO:0004365) glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity(GO:0043891)
23.8	190.1	GO:0047134	protein-disulfide reductase activity(GO:0047134)
9.6	162.5	GO:0008195	phosphatidate phosphatase activity(GO:0008195)
3.0	149.9	GO:0070063	RNA polymerase binding(GO:0070063)
2.1	129.0	GO:0008146	sulfotransferase activity(GO:0008146)
7.3	123.9	GO:0008253	5'-nucleotidase activity(GO:0008253)
4.0	113.3	GO:0042056	chemoattractant activity(GO:0042056)

Showing 1 to 10 of 168 entries

Gene overrepresentation in curated gene sets: canonical pathways category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
2.6	109.5	PID REELIN PATHWAY	Reelin signaling pathway
2.2	85.3	PID P38 ALPHA BETA PATHWAY	Regulation of p38-alpha and p38-beta
2.5	68.7	ST MYOCYTE AD PATHWAY	Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway.
1.9	67.1	PID WNT NONCANONICAL PATHWAY	Noncanonical Wnt signaling pathway
3.0	44.5	PID S1P S1P4 PATHWAY	S1P4 pathway
0.8	38.9	PID ERBB1 INTERNALIZATION PATHWAY	Internalization of ErbB1
0.9	38.5	NABA PROTEOGLYCANS	Genes encoding proteoglycans
3.2	38.3	PID NFAT 3PATHWAY	Role of Calcineurin-dependent NFAT signaling in lymphocytes
2.4	25.9	ST JAK STAT PATHWAY	Jak-STAT Pathway
0.6	22.7	PID HDAC CLASSII PATHWAY	Signaling events mediated by HDAC Class II

Showing 1 to 10 of 31 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
7.0	274.3	REACTOME GLYCOLYSIS	Genes involved in Glycolysis
9.9	129.0	REACTOME CYTOSOLIC SULFONATION OF SMALL MOLECULES	Genes involved in Cytosolic sulfonation of small molecules
11.9	119.3	REACTOME PURINE CATABOLISM	Genes involved in Purine catabolism
4.2	105.6	REACTOME CGMP EFFECTS	Genes involved in cGMP effects
1.0	84.8	REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS	Genes involved in Class B/2 (Secretin family receptors)
2.7	81.0	REACTOME G PROTEIN ACTIVATION	Genes involved in G-protein activation
1.4	72.6	REACTOME O LINKED GLYCOSYLATION OF MUCINS	Genes involved in O-linked glycosylation of mucins
4.5	66.9	REACTOME REGULATION OF PYRUVATE DEHYDROGENASE PDH COMPLEX	Genes involved in Regulation of pyruvate dehydrogenase (PDH) complex
3.9	65.9	REACTOME RETROGRADE NEUROTROPHIN SIGNALLING	Genes involved in Retrograde neurotrophin signalling
0.7	56.6	REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS	Genes involved in Glycerophospholipid biosynthesis

Showing 1 to 10 of 62 entries

Results for Junb_Jund

Z-value: 2.55

Motif logo

Transcription factors associated with Junb_Jund

Activity-expression correlation:

Activity profile of Junb_Jund motif

Sorted Z-values of Junb_Jund motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of Junb_Jund

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: canonical pathways category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: