GSE53960: rat RNA-Seq transcriptomic Bodymap
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Ikzf2 | rn6_v1_chr9_-_76768770_76768806 | 0.61 | 1.7e-33 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr16_-_19918644 Show fit | 24.46 |
ENSRNOT00000083345
ENSRNOT00000023926 |
plasmalemma vesicle associated protein |
|
chr6_+_99356509 Show fit | 24.06 |
ENSRNOT00000008416
|
A-kinase anchoring protein 5 |
|
chr17_-_43798383 Show fit | 22.55 |
ENSRNOT00000075069
|
similar to Histone H1.2 (H1 VAR.1) (H1c) |
|
chr1_+_78711077 Show fit | 21.42 |
ENSRNOT00000064332
|
solute carrier family 1 member 5 |
|
chr9_-_76768770 Show fit | 20.87 |
ENSRNOT00000087779
ENSRNOT00000057849 |
IKAROS family zinc finger 2 |
|
chr6_-_131914028 Show fit | 19.33 |
ENSRNOT00000007602
|
B-cell CLL/lymphoma 11B |
|
chr4_+_147333056 Show fit | 18.18 |
ENSRNOT00000012137
|
peroxisome proliferator-activated receptor gamma |
|
chr7_-_107634287 Show fit | 16.26 |
ENSRNOT00000093672
ENSRNOT00000087116 |
src-like adaptor |
|
chr2_+_236233239 Show fit | 15.81 |
ENSRNOT00000013694
|
lymphoid enhancer binding factor 1 |
|
chr9_+_52023295 Show fit | 15.62 |
ENSRNOT00000004956
|
collagen type III alpha 1 chain |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
5.9 | 35.1 | GO:0002681 | somatic diversification of T cell receptor genes(GO:0002568) somatic recombination of T cell receptor gene segments(GO:0002681) T cell receptor V(D)J recombination(GO:0033153) |
0.8 | 25.6 | GO:0035025 | positive regulation of Rho protein signal transduction(GO:0035025) |
1.3 | 24.5 | GO:0002693 | positive regulation of cellular extravasation(GO:0002693) |
6.0 | 24.1 | GO:0036394 | amylase secretion(GO:0036394) |
2.8 | 22.6 | GO:0016584 | nucleosome positioning(GO:0016584) |
0.2 | 22.2 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
3.1 | 21.4 | GO:0006868 | glutamine transport(GO:0006868) |
6.1 | 18.2 | GO:2000230 | negative regulation of pancreatic stellate cell proliferation(GO:2000230) |
0.2 | 16.3 | GO:0038083 | peptidyl-tyrosine autophosphorylation(GO:0038083) |
3.9 | 15.6 | GO:0060414 | aorta smooth muscle tissue morphogenesis(GO:0060414) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 48.9 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.8 | 25.3 | GO:0005719 | nuclear euchromatin(GO:0005719) |
0.1 | 25.3 | GO:0005667 | transcription factor complex(GO:0005667) |
0.2 | 24.5 | GO:0005901 | caveola(GO:0005901) |
1.6 | 24.1 | GO:0032591 | dendritic spine membrane(GO:0032591) |
0.0 | 20.3 | GO:0070062 | extracellular exosome(GO:0070062) |
0.0 | 19.0 | GO:0097458 | neuron part(GO:0097458) |
0.1 | 18.2 | GO:0090575 | RNA polymerase II transcription factor complex(GO:0090575) |
0.1 | 16.6 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
5.3 | 15.8 | GO:1990907 | beta-catenin-TCF complex(GO:1990907) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 52.7 | GO:0042803 | protein homodimerization activity(GO:0042803) |
1.9 | 39.3 | GO:0070742 | C2H2 zinc finger domain binding(GO:0070742) |
0.1 | 27.6 | GO:0001077 | transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001077) |
0.0 | 25.5 | GO:0005509 | calcium ion binding(GO:0005509) |
2.2 | 24.1 | GO:0030346 | protein phosphatase 2B binding(GO:0030346) |
0.2 | 22.6 | GO:0031490 | chromatin DNA binding(GO:0031490) |
1.8 | 21.4 | GO:0015194 | L-serine transmembrane transporter activity(GO:0015194) serine transmembrane transporter activity(GO:0022889) |
2.6 | 18.2 | GO:0050692 | DBD domain binding(GO:0050692) |
0.0 | 16.8 | GO:0019904 | protein domain specific binding(GO:0019904) |
0.3 | 16.3 | GO:0004715 | non-membrane spanning protein tyrosine kinase activity(GO:0004715) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 27.7 | PID NFAT 3PATHWAY | Role of Calcineurin-dependent NFAT signaling in lymphocytes |
0.4 | 21.0 | PID WNT NONCANONICAL PATHWAY | Noncanonical Wnt signaling pathway |
0.2 | 20.8 | PID PDGFRB PATHWAY | PDGFR-beta signaling pathway |
0.3 | 20.6 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.4 | 17.2 | PID ILK PATHWAY | Integrin-linked kinase signaling |
0.4 | 15.6 | PID ENDOTHELIN PATHWAY | Endothelins |
0.2 | 13.1 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.6 | 12.1 | PID LPA4 PATHWAY | LPA4-mediated signaling events |
0.2 | 11.3 | PID TCR PATHWAY | TCR signaling in naïve CD4+ T cells |
0.4 | 10.6 | SA B CELL RECEPTOR COMPLEXES | Antigen binding to B cell receptors activates protein tyrosine kinases, such as the Src family, which ultimate activate MAP kinases. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 39.9 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
0.7 | 24.1 | REACTOME TRAFFICKING OF AMPA RECEPTORS | Genes involved in Trafficking of AMPA receptors |
0.5 | 21.4 | REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE | Genes involved in Amino acid transport across the plasma membrane |
0.4 | 15.6 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.5 | 14.9 | REACTOME TIGHT JUNCTION INTERACTIONS | Genes involved in Tight junction interactions |
1.0 | 12.1 | REACTOME P2Y RECEPTORS | Genes involved in P2Y receptors |
0.7 | 11.3 | REACTOME CELL EXTRACELLULAR MATRIX INTERACTIONS | Genes involved in Cell-extracellular matrix interactions |
0.5 | 11.3 | REACTOME GENERATION OF SECOND MESSENGER MOLECULES | Genes involved in Generation of second messenger molecules |
0.5 | 10.6 | REACTOME REGULATION OF SIGNALING BY CBL | Genes involved in Regulation of signaling by CBL |
0.8 | 9.3 | REACTOME SYNTHESIS OF PIPS AT THE LATE ENDOSOME MEMBRANE | Genes involved in Synthesis of PIPs at the late endosome membrane |