GSE53960: rat RNA-Seq transcriptomic Bodymap

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Gzf1 Links NCBI RGD Ensembl	ENSRNOG00000004735	GDNF-inducible zinc finger protein 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Gzf1	rn6_v1_chr3_+_143003796_143003796	-0.11	5.1e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr5_-_152358643 Show fit	8.84	ENSRNOT00000021734	Sh3bgrl3 Links NCBI RGD Ensembl Show fit	SH3 domain binding glutamate-rich protein like 3
chr5_+_172364421 Show fit	8.52	ENSRNOT00000018769	Hes5 Links NCBI RGD Ensembl Show fit	hes family bHLH transcription factor 5
chr5_+_147714163 Show fit	8.09	ENSRNOT00000012663	Marcksl1 Links NCBI RGD Ensembl Show fit	MARCKS-like 1
chr2_-_232373409 Show fit	7.38	ENSRNOT00000041479	AABR07013302.1 Links NCBI RGD Ensembl Show fit
chr16_-_69280109 Show fit	6.83	ENSRNOT00000058595	AABR07026240.1 Links NCBI RGD Ensembl Show fit
chr9_-_66627007 Show fit	6.74	ENSRNOT00000049571	AABR07067829.1 Links NCBI RGD Ensembl Show fit
chrX_+_10430847 Show fit	6.67	ENSRNOT00000047936	Rpl21 Links NCBI RGD Ensembl Show fit	ribosomal protein L21
chr9_+_42315682 Show fit	6.37	ENSRNOT00000071995	AABR07067388.1 Links NCBI RGD Ensembl Show fit
chr4_+_178617401 Show fit	6.35	ENSRNOT00000042619	AABR07062466.1 Links NCBI RGD Ensembl Show fit
chr11_+_82415995 Show fit	6.27	ENSRNOT00000051772	AABR07034641.1 Links NCBI RGD Ensembl Show fit
chr17_-_74679696 Show fit	6.27	ENSRNOT00000048420	AABR07028558.1 Links NCBI RGD Ensembl Show fit
chr8_-_60752047 Show fit	5.95	ENSRNOT00000048115	AABR07070238.2 Links NCBI RGD Ensembl Show fit
chr2_+_31378743 Show fit	5.94	ENSRNOT00000050384	AABR07007853.1 Links NCBI RGD Ensembl Show fit
chr12_-_9998779 Show fit	5.75	ENSRNOT00000001265	Rpl21 Links NCBI RGD Ensembl Show fit	ribosomal protein L21
chr3_+_159305345 Show fit	5.56	ENSRNOT00000008427	Srsf6 Links NCBI RGD Ensembl Show fit	serine and arginine rich splicing factor 6
chr2_-_34419428 Show fit	5.37	ENSRNOT00000048123	AABR07007905.1 Links NCBI RGD Ensembl Show fit
chr15_+_108956448 Show fit	5.33	ENSRNOT00000046324	AC123185.1 Links NCBI RGD Ensembl Show fit
chr1_-_264706476 Show fit	5.23	ENSRNOT00000045446	AC121209.1 Links NCBI RGD Ensembl Show fit
chr17_-_84705052 Show fit	5.22	ENSRNOT00000050803	AABR07028749.1 Links NCBI RGD Ensembl Show fit
chr2_-_208225888 Show fit	4.86	ENSRNOT00000054860	AABR07012775.1 Links NCBI RGD Ensembl Show fit
chr3_+_91870208 Show fit	4.67	ENSRNOT00000040249	Rpl21 Links NCBI RGD Ensembl Show fit	ribosomal protein L21
chr8_+_32604365 Show fit	4.53	ENSRNOT00000071210	AABR07069587.1 Links NCBI RGD Ensembl Show fit
chr3_-_58009514 Show fit	4.29	ENSRNOT00000048356	AABR07052498.1 Links NCBI RGD Ensembl Show fit
chr4_-_61502778 Show fit	3.97	ENSRNOT00000051232	AABR07060190.1 Links NCBI RGD Ensembl Show fit
chrX_-_20359945 Show fit	3.48	ENSRNOT00000049138	AABR07037412.1 Links NCBI RGD Ensembl Show fit
chr16_-_32299542 Show fit	3.17	ENSRNOT00000072321	AABR07025299.1 Links NCBI RGD Ensembl Show fit
chr7_-_27136652 Show fit	3.06	ENSRNOT00000086905	Hcfc2 Links NCBI RGD Ensembl Show fit	host cell factor C2
chr11_+_3119885 Show fit	2.84	ENSRNOT00000042316	Vgll3 Links NCBI RGD Ensembl Show fit	vestigial-like family member 3
chr19_+_33130303 Show fit	2.44	ENSRNOT00000048673	LOC102550668 Links NCBI RGD Ensembl Show fit	60S ribosomal protein L21-like
chr9_+_76440186 Show fit	0.85	ENSRNOT00000049479	RGD1562431 Links NCBI RGD Ensembl Show fit	similar to chromosome 20 open reading frame 81
chr15_+_34584320 Show fit	0.41	ENSRNOT00000048255	AABR07017917.1 Links NCBI RGD Ensembl Show fit
chr19_+_37825576 Show fit	0.26	ENSRNOT00000025815	Thap11 Links NCBI RGD Ensembl Show fit	THAP domain containing 11
chr15_-_20032191 Show fit	0.21	ENSRNOT00000032704	Ddhd1 Links NCBI RGD Ensembl Show fit	DDHD domain containing 1

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
2.8	8.5	GO:0042668	auditory receptor cell fate determination(GO:0042668) negative regulation of pro-B cell differentiation(GO:2000974) negative regulation of forebrain neuron differentiation(GO:2000978)
0.7	5.6	GO:0060501	positive regulation of epithelial cell proliferation involved in lung morphogenesis(GO:0060501)
0.1	8.8	GO:0030834	regulation of actin filament depolymerization(GO:0030834)
0.0	0.2	GO:0030382	sperm mitochondrion organization(GO:0030382)
0.0	17.1	GO:0006412	translation(GO:0006412)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	17.1	GO:0022625	cytosolic large ribosomal subunit(GO:0022625)
0.0	8.8	GO:0030027	lamellipodium(GO:0030027)
0.0	5.6	GO:0016607	nuclear speck(GO:0016607)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.7	8.8	GO:0030215	semaphorin receptor binding(GO:0030215)
0.2	5.6	GO:0036002	pre-mRNA binding(GO:0036002)
0.1	17.1	GO:0003735	structural constituent of ribosome(GO:0003735)
0.1	8.8	GO:0001078	transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078)
0.0	8.1	GO:0005516	calmodulin binding(GO:0005516)
0.0	2.8	GO:0003705	transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0003705)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	8.5	PID CDC42 PATHWAY	CDC42 signaling events

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	17.1	REACTOME PEPTIDE CHAIN ELONGATION	Genes involved in Peptide chain elongation
0.2	8.5	REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION	Genes involved in NOTCH1 Intracellular Domain Regulates Transcription
0.1	5.6	REACTOME MRNA 3 END PROCESSING	Genes involved in mRNA 3'-end processing