Project
GSE53960: rat RNA-Seq transcriptomic Bodymap
Navigation
Downloads
Results for Gmeb1
Z-value: 0.41
Motif logo
Transcription factors associated with Gmeb1
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| Gmeb1 | rn6_v1_chr5_-_150439959_150439959 | 0.04 | 4.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr3_-_175709465 Show fit | 7.19 |
ENSRNOT00000089971
|
GATA binding protein 5 |
|
| chr1_-_222468896 Show fit | 6.23 |
ENSRNOT00000028754
|
cytochrome c oxidase subunit 8A |
|
| chr10_-_83898527 Show fit | 5.34 |
ENSRNOT00000009815
|
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) |
|
| chr3_+_150801289 Show fit | 4.99 |
ENSRNOT00000035060
|
microtubule-associated protein 1 light chain 3 alpha |
|
| chr6_-_8346197 Show fit | 4.38 |
ENSRNOT00000061826
|
prolyl endopeptidase-like |
|
| chr10_-_82252720 Show fit | 4.33 |
ENSRNOT00000066132
ENSRNOT00000075795 |
Mycbp associated protein |
|
| chr17_-_79676499 Show fit | 4.32 |
ENSRNOT00000022711
|
integrin subunit alpha 8 |
|
| chr15_-_37325178 Show fit | 4.32 |
ENSRNOT00000011699
|
gap junction protein, alpha 3 |
|
| chr10_-_82252963 Show fit | 4.05 |
ENSRNOT00000086261
|
Mycbp associated protein |
|
| chr1_+_261158261 Show fit | 3.93 |
ENSRNOT00000071965
|
phosphoglycerate mutase 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of Gmeb1
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 8.8 | GO:0015985 | energy coupled proton transport, down electrochemical gradient(GO:0015985) ATP synthesis coupled proton transport(GO:0015986) |
| 0.1 | 8.4 | GO:0007605 | sensory perception of sound(GO:0007605) |
| 0.3 | 7.2 | GO:0060575 | intestinal epithelial cell differentiation(GO:0060575) |
| 0.5 | 6.2 | GO:0006123 | mitochondrial electron transport, cytochrome c to oxygen(GO:0006123) |
| 0.3 | 5.0 | GO:0010040 | response to iron(II) ion(GO:0010040) |
| 1.4 | 4.3 | GO:2000721 | positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation(GO:2000721) |
| 0.1 | 4.3 | GO:0009268 | response to pH(GO:0009268) |
| 0.6 | 3.9 | GO:0043456 | regulation of pentose-phosphate shunt(GO:0043456) |
| 1.3 | 3.8 | GO:0035880 | embryonic nail plate morphogenesis(GO:0035880) positive regulation of mesenchymal cell apoptotic process(GO:2001055) |
| 1.2 | 3.7 | GO:0016480 | negative regulation of transcription from RNA polymerase III promoter(GO:0016480) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 10.9 | GO:0005667 | transcription factor complex(GO:0005667) |
| 0.0 | 8.2 | GO:0019897 | extrinsic component of plasma membrane(GO:0019897) |
| 0.0 | 6.7 | GO:0005759 | mitochondrial matrix(GO:0005759) |
| 0.4 | 6.2 | GO:0005751 | mitochondrial respiratory chain complex IV(GO:0005751) |
| 0.4 | 5.3 | GO:0000276 | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)(GO:0000276) |
| 0.3 | 5.0 | GO:0044754 | autolysosome(GO:0044754) |
| 0.3 | 4.3 | GO:0032591 | dendritic spine membrane(GO:0032591) |
| 0.2 | 4.3 | GO:0005922 | connexon complex(GO:0005922) |
| 0.0 | 3.9 | GO:0043209 | myelin sheath(GO:0043209) |
| 0.2 | 3.7 | GO:0031907 | peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 7.2 | GO:0001158 | enhancer sequence-specific DNA binding(GO:0001158) |
| 0.2 | 6.2 | GO:0016676 | cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676) |
| 0.3 | 5.3 | GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism(GO:0046933) |
| 0.5 | 5.0 | GO:0008429 | phosphatidylethanolamine binding(GO:0008429) |
| 0.4 | 4.4 | GO:0070008 | serine-type exopeptidase activity(GO:0070008) |
| 0.3 | 4.3 | GO:0005243 | gap junction channel activity(GO:0005243) |
| 1.0 | 3.9 | GO:0004619 | bisphosphoglycerate mutase activity(GO:0004082) phosphoglycerate mutase activity(GO:0004619) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity(GO:0046538) |
| 0.9 | 3.7 | GO:0008379 | thioredoxin peroxidase activity(GO:0008379) |
| 0.5 | 3.5 | GO:0072542 | protein phosphatase activator activity(GO:0072542) |
| 0.2 | 3.5 | GO:0044769 | ATPase activity, coupled to transmembrane movement of ions, rotational mechanism(GO:0044769) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 5.1 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
| 0.1 | 4.3 | PID INTEGRIN CS PATHWAY | Integrin family cell surface interactions |
| 0.1 | 3.5 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.2 | 2.9 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.0 | 2.1 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 1.0 | PID TCR JNK PATHWAY | JNK signaling in the CD4+ TCR pathway |
| 0.0 | 1.0 | PID LKB1 PATHWAY | LKB1 signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 7.2 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 6.2 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
| 0.3 | 5.3 | REACTOME FORMATION OF ATP BY CHEMIOSMOTIC COUPLING | Genes involved in Formation of ATP by chemiosmotic coupling |
| 0.1 | 5.1 | REACTOME SYNTHESIS OF PIPS AT THE PLASMA MEMBRANE | Genes involved in Synthesis of PIPs at the plasma membrane |
| 0.2 | 4.3 | REACTOME GAP JUNCTION ASSEMBLY | Genes involved in Gap junction assembly |
| 0.1 | 4.3 | REACTOME INTEGRIN CELL SURFACE INTERACTIONS | Genes involved in Integrin cell surface interactions |
| 0.1 | 3.9 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
| 0.2 | 3.5 | REACTOME REGULATION OF INSULIN LIKE GROWTH FACTOR IGF ACTIVITY BY INSULIN LIKE GROWTH FACTOR BINDING PROTEINS IGFBPS | Genes involved in Regulation of Insulin-like Growth Factor (IGF) Activity by Insulin-like Growth Factor Binding Proteins (IGFBPs) |
| 0.2 | 3.1 | REACTOME RETROGRADE NEUROTROPHIN SIGNALLING | Genes involved in Retrograde neurotrophin signalling |
| 0.1 | 2.9 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |