GSE53960: rat RNA-Seq transcriptomic Bodymap
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Gata5 | rn6_v1_chr3_-_175709465_175709465 | -0.42 | 3.5e-15 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr15_-_45524582 Show fit | 37.26 |
ENSRNOT00000081912
|
guanylate cyclase 1 soluble subunit beta 2 |
|
chr8_+_50525091 Show fit | 37.24 |
ENSRNOT00000074357
|
apolipoprotein A1 |
|
chr8_-_85645718 Show fit | 33.76 |
ENSRNOT00000032185
|
glutathione S-transferase alpha 2 |
|
chr17_-_43537293 Show fit | 28.49 |
ENSRNOT00000091749
|
solute carrier family 17 member 3 |
|
chr14_+_22517774 Show fit | 26.49 |
ENSRNOT00000047655
|
UDP-glucuronosyltransferase 2 family, member 37 |
|
chr2_+_147496229 Show fit | 26.25 |
ENSRNOT00000022105
|
transmembrane 4 L six family member 4 |
|
chr13_+_44424689 Show fit | 25.16 |
ENSRNOT00000005206
|
aminocarboxymuconate semialdehyde decarboxylase |
|
chr4_+_70776046 Show fit | 25.15 |
ENSRNOT00000040403
|
protease, serine 1 |
|
chr2_-_182038178 Show fit | 24.43 |
ENSRNOT00000040708
|
fibrinogen beta chain |
|
chr3_-_127500709 Show fit | 23.92 |
ENSRNOT00000006330
|
hydroxyacid oxidase 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 96.8 | GO:0050911 | detection of chemical stimulus involved in sensory perception of smell(GO:0050911) |
12.4 | 37.2 | GO:0010903 | negative regulation of very-low-density lipoprotein particle remodeling(GO:0010903) |
2.6 | 33.8 | GO:0042178 | xenobiotic catabolic process(GO:0042178) |
0.6 | 33.6 | GO:0006182 | cGMP biosynthetic process(GO:0006182) |
2.6 | 28.5 | GO:0015747 | urate transport(GO:0015747) |
4.2 | 25.2 | GO:0046874 | quinolinate metabolic process(GO:0046874) |
1.0 | 25.2 | GO:0030574 | collagen catabolic process(GO:0030574) |
4.9 | 24.4 | GO:0043152 | induction of bacterial agglutination(GO:0043152) |
6.0 | 23.9 | GO:0009441 | glycolate metabolic process(GO:0009441) |
0.2 | 23.7 | GO:0008203 | cholesterol metabolic process(GO:0008203) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 90.0 | GO:0005615 | extracellular space(GO:0005615) |
1.5 | 37.3 | GO:0008074 | guanylate cyclase complex, soluble(GO:0008074) |
7.4 | 37.2 | GO:0034365 | discoidal high-density lipoprotein particle(GO:0034365) |
1.3 | 33.8 | GO:0005640 | nuclear outer membrane(GO:0005640) |
0.2 | 26.1 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
3.1 | 24.4 | GO:0005577 | fibrinogen complex(GO:0005577) |
0.1 | 23.5 | GO:0016324 | apical plasma membrane(GO:0016324) |
0.1 | 20.9 | GO:0005759 | mitochondrial matrix(GO:0005759) |
0.2 | 20.2 | GO:0048770 | melanosome(GO:0042470) pigment granule(GO:0048770) |
0.7 | 16.2 | GO:0005942 | phosphatidylinositol 3-kinase complex(GO:0005942) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 70.2 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.1 | 50.6 | GO:0004984 | olfactory receptor activity(GO:0004984) |
0.1 | 42.7 | GO:0005549 | odorant binding(GO:0005549) |
1.4 | 42.3 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
1.5 | 37.3 | GO:0004383 | guanylate cyclase activity(GO:0004383) |
12.4 | 37.2 | GO:0070653 | high-density lipoprotein particle receptor binding(GO:0070653) |
1.9 | 33.8 | GO:0043295 | glutathione binding(GO:0043295) |
2.8 | 28.5 | GO:0015143 | urate transmembrane transporter activity(GO:0015143) efflux transmembrane transporter activity(GO:0015562) salt transmembrane transporter activity(GO:1901702) |
0.6 | 25.2 | GO:0016831 | carboxy-lyase activity(GO:0016831) |
0.2 | 25.1 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 99.5 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.8 | 46.4 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.7 | 21.4 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.3 | 16.2 | ST DIFFERENTIATION PATHWAY IN PC12 CELLS | Differentiation Pathway in PC12 Cells; this is a specific case of PAC1 Receptor Pathway. |
0.4 | 13.9 | PID ALK1 PATHWAY | ALK1 signaling events |
0.4 | 13.0 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.5 | 10.9 | PID INTEGRIN CS PATHWAY | Integrin family cell surface interactions |
0.2 | 8.9 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.2 | 7.2 | PID RET PATHWAY | Signaling events regulated by Ret tyrosine kinase |
0.3 | 4.2 | PID DNA PK PATHWAY | DNA-PK pathway in nonhomologous end joining |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 42.7 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
2.2 | 37.2 | REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT | Genes involved in Chylomicron-mediated lipid transport |
2.0 | 35.4 | REACTOME P130CAS LINKAGE TO MAPK SIGNALING FOR INTEGRINS | Genes involved in p130Cas linkage to MAPK signaling for integrins |
1.1 | 33.8 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
2.8 | 25.2 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.9 | 25.2 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
0.6 | 20.8 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
0.2 | 19.3 | REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2 | Genes involved in Response to elevated platelet cytosolic Ca2+ |
0.8 | 15.8 | REACTOME GLUCURONIDATION | Genes involved in Glucuronidation |
0.2 | 15.5 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |