GSE53960: rat RNA-Seq transcriptomic Bodymap
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Foxf1 | rn6_v1_chr19_+_53012332_53012332 | 0.16 | 5.3e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr1_-_253000760 Show fit | 31.73 |
ENSRNOT00000030024
|
solute carrier family 16, member 12 |
|
chr5_-_7874909 Show fit | 28.43 |
ENSRNOT00000064774
|
phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 |
|
chr3_+_41019898 Show fit | 26.12 |
ENSRNOT00000007335
|
potassium voltage-gated channel subfamily J member 3 |
|
chr13_-_47377703 Show fit | 23.16 |
ENSRNOT00000005461
|
complement component 4 binding protein, alpha |
|
chr8_-_26345754 Show fit | 21.13 |
ENSRNOT00000091773
|
triosephosphate isomerase |
|
chr13_+_78805347 Show fit | 19.98 |
ENSRNOT00000003748
|
serpin family C member 1 |
|
chr11_-_81660395 Show fit | 19.27 |
ENSRNOT00000048739
|
fetuin B |
|
chr15_-_28313841 Show fit | 18.40 |
ENSRNOT00000085897
|
NDRG family member 2 |
|
chr8_-_128711221 Show fit | 18.09 |
ENSRNOT00000055888
|
xin actin-binding repeat containing 1 |
|
chr2_+_200572502 Show fit | 17.47 |
ENSRNOT00000074666
|
zinc finger protein 697 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 51.3 | GO:0050911 | detection of chemical stimulus involved in sensory perception of smell(GO:0050911) |
1.2 | 31.7 | GO:0072337 | modified amino acid transport(GO:0072337) |
4.4 | 26.1 | GO:1990573 | potassium ion import across plasma membrane(GO:1990573) |
7.7 | 23.2 | GO:0045959 | negative regulation of complement activation, classical pathway(GO:0045959) |
5.0 | 20.0 | GO:0007597 | blood coagulation, intrinsic pathway(GO:0007597) |
0.6 | 19.3 | GO:0007339 | binding of sperm to zona pellucida(GO:0007339) |
0.2 | 18.6 | GO:0051965 | positive regulation of synapse assembly(GO:0051965) |
4.6 | 18.4 | GO:0090360 | platelet-derived growth factor production(GO:0090360) regulation of platelet-derived growth factor production(GO:0090361) |
0.4 | 18.4 | GO:0045214 | sarcomere organization(GO:0045214) |
1.7 | 17.3 | GO:0015697 | quaternary ammonium group transport(GO:0015697) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 36.7 | GO:0072562 | blood microparticle(GO:0072562) |
0.4 | 27.6 | GO:0005581 | collagen trimer(GO:0005581) |
0.3 | 26.1 | GO:0030315 | T-tubule(GO:0030315) |
0.6 | 25.8 | GO:0032590 | dendrite membrane(GO:0032590) |
0.1 | 23.9 | GO:0099572 | postsynaptic density(GO:0014069) postsynaptic specialization(GO:0099572) |
0.2 | 23.3 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
4.6 | 23.2 | GO:0043159 | acrosomal matrix(GO:0043159) |
0.2 | 22.4 | GO:0005902 | microvillus(GO:0005902) |
0.4 | 21.8 | GO:0042645 | nucleoid(GO:0009295) mitochondrial nucleoid(GO:0042645) |
1.0 | 18.1 | GO:0005916 | fascia adherens(GO:0005916) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 46.2 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
1.4 | 31.8 | GO:0030676 | Rac guanyl-nucleotide exchange factor activity(GO:0030676) |
1.6 | 31.7 | GO:0051184 | cofactor transporter activity(GO:0051184) modified amino acid transmembrane transporter activity(GO:0072349) |
0.0 | 26.9 | GO:0004984 | olfactory receptor activity(GO:0004984) |
5.2 | 26.1 | GO:0015467 | G-protein activated inward rectifier potassium channel activity(GO:0015467) |
0.1 | 23.8 | GO:0005549 | odorant binding(GO:0005549) |
1.2 | 23.2 | GO:0001848 | complement binding(GO:0001848) |
1.6 | 19.3 | GO:0008191 | metalloendopeptidase inhibitor activity(GO:0008191) |
0.1 | 17.4 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
5.8 | 17.3 | GO:1901375 | acetylcholine transmembrane transporter activity(GO:0005277) acetate ester transmembrane transporter activity(GO:1901375) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 42.2 | PID RAC1 REG PATHWAY | Regulation of RAC1 activity |
0.9 | 26.1 | ST MYOCYTE AD PATHWAY | Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway. |
0.6 | 23.6 | PID CD40 PATHWAY | CD40/CD40L signaling |
0.1 | 23.5 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.5 | 20.5 | PID GLYPICAN 1PATHWAY | Glypican 1 network |
0.1 | 17.9 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.9 | 16.4 | PID CDC42 REG PATHWAY | Regulation of CDC42 activity |
0.9 | 11.1 | PID S1P S1P4 PATHWAY | S1P4 pathway |
0.1 | 9.9 | PID MET PATHWAY | Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) |
0.2 | 9.5 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 27.3 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.9 | 26.1 | REACTOME INHIBITION OF VOLTAGE GATED CA2 CHANNELS VIA GBETA GAMMA SUBUNITS | Genes involved in Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits |
0.2 | 25.7 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
1.7 | 23.2 | REACTOME REGULATION OF COMPLEMENT CASCADE | Genes involved in Regulation of Complement cascade |
1.3 | 20.1 | REACTOME COMMON PATHWAY | Genes involved in Common Pathway |
0.5 | 19.2 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
1.9 | 17.3 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
0.3 | 16.3 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.6 | 14.0 | REACTOME SIGNALING BY HIPPO | Genes involved in Signaling by Hippo |
0.7 | 13.6 | REACTOME HS GAG DEGRADATION | Genes involved in HS-GAG degradation |