GSE53960: rat RNA-Seq transcriptomic Bodymap
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Etv1 | rn6_v1_chr6_+_58468155_58468155 | 0.26 | 3.5e-06 | Click! |
Gabpa | rn6_v1_chr11_+_24263281_24263281 | 0.16 | 4.7e-03 | Click! |
Etv5 | rn6_v1_chr11_+_82194657_82194657 | -0.03 | 5.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_-_34166599 Show fit | 74.37 |
ENSRNOT00000003246
|
tripartite motif-containing 41 |
|
chr10_-_103826448 Show fit | 46.69 |
ENSRNOT00000085636
|
ferredoxin reductase |
|
chr7_-_30397930 Show fit | 42.00 |
ENSRNOT00000010414
|
ARP6 actin-related protein 6 homolog |
|
chr12_-_39667849 Show fit | 36.50 |
ENSRNOT00000011499
|
actin related protein 2/3 complex, subunit 3 |
|
chr2_+_115337439 Show fit | 36.31 |
ENSRNOT00000015779
|
eukaryotic translation initiation factor 5A2 |
|
chr6_-_104290579 Show fit | 34.11 |
ENSRNOT00000066014
|
enhancer of rudimentary homolog (Drosophila) |
|
chr3_-_168018410 Show fit | 34.10 |
ENSRNOT00000087579
|
breast carcinoma amplified sequence 1 |
|
chr4_+_118655728 Show fit | 33.01 |
ENSRNOT00000043082
|
AP2 associated kinase 1 |
|
chr2_-_18927365 Show fit | 32.85 |
ENSRNOT00000045850
|
X-ray repair cross complementing 4 |
|
chr10_-_34990943 Show fit | 32.79 |
ENSRNOT00000075555
|
required for meiotic nuclear division 5 homolog B |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 112.3 | GO:0050911 | detection of chemical stimulus involved in sensory perception of smell(GO:0050911) |
1.1 | 94.4 | GO:0035308 | negative regulation of protein dephosphorylation(GO:0035308) |
0.8 | 78.5 | GO:0006888 | ER to Golgi vesicle-mediated transport(GO:0006888) |
0.7 | 77.8 | GO:0042787 | protein ubiquitination involved in ubiquitin-dependent protein catabolic process(GO:0042787) |
1.8 | 74.7 | GO:0045747 | positive regulation of Notch signaling pathway(GO:0045747) |
1.4 | 69.4 | GO:0042773 | ATP synthesis coupled electron transport(GO:0042773) |
0.8 | 64.7 | GO:0006364 | rRNA processing(GO:0006364) |
1.1 | 58.5 | GO:1902600 | hydrogen ion transmembrane transport(GO:1902600) |
0.6 | 57.6 | GO:0006626 | protein targeting to mitochondrion(GO:0006626) |
2.3 | 56.3 | GO:0000387 | spliceosomal snRNP assembly(GO:0000387) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 447.3 | GO:0005730 | nucleolus(GO:0005730) |
0.1 | 313.2 | GO:0005634 | nucleus(GO:0005634) |
0.7 | 178.5 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
2.6 | 152.4 | GO:0000315 | organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762) |
2.8 | 144.3 | GO:0030964 | mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271) |
0.8 | 120.0 | GO:0005741 | mitochondrial outer membrane(GO:0005741) |
1.0 | 89.6 | GO:0071013 | catalytic step 2 spliceosome(GO:0071013) |
0.3 | 75.4 | GO:0014069 | postsynaptic density(GO:0014069) |
1.2 | 74.2 | GO:0005758 | mitochondrial intermembrane space(GO:0005758) |
2.4 | 70.0 | GO:0030687 | preribosome, large subunit precursor(GO:0030687) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 391.2 | GO:0003723 | RNA binding(GO:0003723) |
0.6 | 250.3 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
0.2 | 156.6 | GO:0008270 | zinc ion binding(GO:0008270) |
0.1 | 112.3 | GO:0004984 | olfactory receptor activity(GO:0004984) |
3.6 | 99.6 | GO:0003954 | NADH dehydrogenase activity(GO:0003954) |
1.1 | 72.1 | GO:0004004 | RNA helicase activity(GO:0003724) ATP-dependent RNA helicase activity(GO:0004004) |
1.1 | 71.9 | GO:0003743 | translation initiation factor activity(GO:0003743) |
1.4 | 61.3 | GO:0017112 | Rab guanyl-nucleotide exchange factor activity(GO:0017112) |
0.0 | 56.9 | GO:0003676 | nucleic acid binding(GO:0003676) |
2.5 | 54.5 | GO:0003746 | translation elongation factor activity(GO:0003746) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.2 | 60.4 | PID DNA PK PATHWAY | DNA-PK pathway in nonhomologous end joining |
1.0 | 58.2 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
0.9 | 36.5 | PID ATR PATHWAY | ATR signaling pathway |
1.1 | 33.5 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
1.0 | 32.9 | PID SYNDECAN 2 PATHWAY | Syndecan-2-mediated signaling events |
0.8 | 31.7 | PID AURORA B PATHWAY | Aurora B signaling |
1.0 | 31.2 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
0.4 | 31.0 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
1.1 | 28.8 | PID ARF 3PATHWAY | Arf1 pathway |
0.5 | 28.3 | PID RAC1 PATHWAY | RAC1 signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 143.9 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
2.5 | 129.2 | REACTOME VIF MEDIATED DEGRADATION OF APOBEC3G | Genes involved in Vif-mediated degradation of APOBEC3G |
1.9 | 119.5 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
2.1 | 98.6 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
2.5 | 71.1 | REACTOME ELONGATION ARREST AND RECOVERY | Genes involved in Elongation arrest and recovery |
2.2 | 67.3 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
2.4 | 56.7 | REACTOME PTM GAMMA CARBOXYLATION HYPUSINE FORMATION AND ARYLSULFATASE ACTIVATION | Genes involved in PTM: gamma carboxylation, hypusine formation and arylsulfatase activation |
2.9 | 51.5 | REACTOME FORMATION OF TRANSCRIPTION COUPLED NER TC NER REPAIR COMPLEX | Genes involved in Formation of transcription-coupled NER (TC-NER) repair complex |
1.8 | 47.5 | REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC | Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC |
2.1 | 43.1 | REACTOME MITOCHONDRIAL TRNA AMINOACYLATION | Genes involved in Mitochondrial tRNA aminoacylation |