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GSE53960: rat RNA-Seq transcriptomic Bodymap

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Results for E2f7

Z-value: 1.46

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Transcription factors associated with E2f7

Gene Symbol Gene ID Gene Info
E2f7
ENSRNOG00000026252 E2F transcription factor 7

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
E2f7rn6_v1_chr7_+_53275676_532756760.846.1e-87Click!

Activity profile of E2f7 motif

Sorted Z-values of E2f7 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr17_-_44841382 92.22 ENSRNOT00000080119
Hist1h2ak
histone cluster 1, H2ak
chr17_+_44738643 88.60 ENSRNOT00000087643
LOC100910554
histone H2A type 1-like
chr17_+_44763598 77.51 ENSRNOT00000079880
Hist1h3b
histone cluster 1, H3b
chr17_-_44738330 75.81 ENSRNOT00000072195
LOC100364835
histone cluster 1, H2bd-like
chr17_-_44793927 71.82 ENSRNOT00000086309
Hist1h2bo
histone cluster 1 H2B family member o
chr17_+_44520537 65.37 ENSRNOT00000077985
hist1h2ail2
histone cluster 1, H2ai-like2
chr17_+_44528125 64.96 ENSRNOT00000084538
LOC680322
similar to Histone H2A type 1
chr6_+_43884678 64.59 ENSRNOT00000091551
Rrm2
ribonucleotide reductase regulatory subunit M2
chr19_+_14523554 63.54 ENSRNOT00000084271
ENSRNOT00000064731
Mcm5
minichromosome maintenance complex component 5
chr17_+_44794130 62.40 ENSRNOT00000077571
Hist1h2ac
histone cluster 1, H2ac
chr3_+_59153280 60.11 ENSRNOT00000002066
Cdca7
cell division cycle associated 7
chr17_-_43798383 59.16 ENSRNOT00000075069
LOC684828
similar to Histone H1.2 (H1 VAR.1) (H1c)
chr17_-_44520240 57.21 ENSRNOT00000086538
Hist1h2bh
histone cluster 1 H2B family member h
chr20_+_20576377 56.74 ENSRNOT00000000783
ENSRNOT00000086806
Cdk1
cyclin-dependent kinase 1
chr3_-_91217491 54.86 ENSRNOT00000006115
Rag1
recombination activating 1
chr4_-_69268336 53.82 ENSRNOT00000018042
Prss3b
protease, serine, 3B
chr17_-_44527801 52.58 ENSRNOT00000089643
Hist1h2bk
histone cluster 1 H2B family member k
chr13_-_45068077 46.12 ENSRNOT00000004969
Mcm6
minichromosome maintenance complex component 6
chr17_-_44815995 45.85 ENSRNOT00000091201
RGD1562378
histone H4 variant H4-v.1
chr15_-_42518855 44.48 ENSRNOT00000076451
Esco2
establishment of sister chromatid cohesion N-acetyltransferase 2
chr6_+_144291974 37.23 ENSRNOT00000035255
Ncapg2
non-SMC condensin II complex, subunit G2
chr4_-_120840111 32.19 ENSRNOT00000022231
Mcm2
minichromosome maintenance complex component 2
chr6_-_36940868 31.96 ENSRNOT00000006470
Gen1
GEN1 Holliday junction 5' flap endonuclease
chr10_+_67427066 30.97 ENSRNOT00000035642
Atad5
ATPase family, AAA domain containing 5
chr10_-_25890639 27.05 ENSRNOT00000085499
Hmmr
hyaluronan-mediated motility receptor
chr17_-_43770561 26.81 ENSRNOT00000088408
RGD1562378
histone H4 variant H4-v.1
chr5_+_144581427 26.16 ENSRNOT00000015227
Clspn
claspin
chr8_-_39201588 22.05 ENSRNOT00000011226
Stt3a
STT3A, catalytic subunit of the oligosaccharyltransferase complex
chrX_+_29157470 21.50 ENSRNOT00000081986
LOC100910245
ribose-phosphate pyrophosphokinase 2-like
chr2_-_250778269 21.12 ENSRNOT00000085670
ENSRNOT00000083535
ENSRNOT00000017824
Clca5
chloride channel accessory 5
chr11_+_82373870 15.67 ENSRNOT00000002429
Tra2b
transformer 2 beta homolog (Drosophila)
chr1_+_80056755 15.15 ENSRNOT00000021221
Snrpd2
small nuclear ribonucleoprotein D2 polypeptide
chr9_-_53732858 12.98 ENSRNOT00000029204
Nemp2
nuclear envelope integral membrane protein 2
chr14_+_82356916 12.32 ENSRNOT00000040229
Slbp
stem-loop binding protein
chr2_+_187893368 12.27 ENSRNOT00000092031
Mex3a
mex-3 RNA binding family member A
chr6_+_11644578 11.49 ENSRNOT00000021923
ENSRNOT00000093689
Msh6
mutS homolog 6
chr10_-_78993045 11.46 ENSRNOT00000043005
LOC100363469
ribosomal protein S24-like
chr9_+_81783349 11.23 ENSRNOT00000021548
Cnot9
CCR4-NOT transcription complex subunit 9
chr11_+_86852711 9.71 ENSRNOT00000002581
Dgcr8
DGCR8 microprocessor complex subunit
chr10_-_103736973 9.57 ENSRNOT00000004372
Nat9
N-acetyltransferase 9
chr1_-_92119951 9.49 ENSRNOT00000018153
ENSRNOT00000092121
Zfp507
zinc finger protein 507
chr1_+_100811755 8.60 ENSRNOT00000074847
Nup62
nucleoporin 62
chr3_+_114129589 8.59 ENSRNOT00000056119
Terb2
telomere repeat binding bouquet formation protein 2
chr1_+_80000165 8.35 ENSRNOT00000084912
Six5
SIX homeobox 5
chr1_-_82546937 8.24 ENSRNOT00000028100
Hnrnpul1
heterogeneous nuclear ribonucleoprotein U-like 1
chr1_-_80056574 7.60 ENSRNOT00000021200
Qpctl
glutaminyl-peptide cyclotransferase-like
chr4_-_144318580 7.34 ENSRNOT00000007591
Ssuh2
ssu-2 homolog
chr15_+_4356261 7.11 ENSRNOT00000009009
Dnajc9
DnaJ heat shock protein family (Hsp40) member C9
chr8_+_119135013 7.09 ENSRNOT00000056114
Prss50
protease, serine, 50
chr1_+_145770135 6.85 ENSRNOT00000015320
Stard5
StAR-related lipid transfer domain containing 5
chr6_-_99783047 6.82 ENSRNOT00000009028
Sptb
spectrin, beta, erythrocytic
chr8_-_63533546 6.70 ENSRNOT00000012381
Rec114
REC114 meiotic recombination protein
chr10_+_3218466 6.20 ENSRNOT00000093629
ENSRNOT00000093338
ENSRNOT00000077695
Ntan1
N-terminal asparagine amidase
chr6_+_10912383 5.91 ENSRNOT00000061747
ENSRNOT00000086247
Ttc7a
tetratricopeptide repeat domain 7A
chr10_-_57005272 5.66 ENSRNOT00000026102
Pelp1
proline, glutamate and leucine rich protein 1
chr3_-_5975734 5.41 ENSRNOT00000081376
Vav2
vav guanine nucleotide exchange factor 2
chr12_-_30501860 5.40 ENSRNOT00000001227
Cct6a
chaperonin containing TCP1 subunit 6A
chr13_+_98857177 5.25 ENSRNOT00000004232
Parp1
poly (ADP-ribose) polymerase 1
chr8_+_39960542 4.82 ENSRNOT00000013370
Msantd2
Myb/SANT-like DNA-binding domain containing 2
chr3_+_162357356 4.36 ENSRNOT00000030119
Eya2
EYA transcriptional coactivator and phosphatase 2
chr17_-_30865419 4.33 ENSRNOT00000022929
Fam50b
family with sequence similarity 50, member B
chr1_+_226091774 4.25 ENSRNOT00000027693
Fads3
fatty acid desaturase 3
chr14_-_86706626 4.10 ENSRNOT00000082893
H2afv
H2A histone family, member V
chr11_-_89260297 4.05 ENSRNOT00000057502
Spidr
scaffolding protein involved in DNA repair
chr19_-_44211208 3.84 ENSRNOT00000026309
Adat1
adenosine deaminase, tRNA-specific 1
chr4_-_57823283 3.59 ENSRNOT00000032772
ENSRNOT00000091255
Tmem209
transmembrane protein 209
chrX_+_54734385 3.45 ENSRNOT00000005023
Nr0b1
nuclear receptor subfamily 0, group B, member 1
chr6_+_36941596 3.43 ENSRNOT00000083383
Smc6
structural maintenance of chromosomes 6
chr6_+_36941233 3.12 ENSRNOT00000007073
Smc6
structural maintenance of chromosomes 6
chrX_+_156812064 2.99 ENSRNOT00000077142
Hcfc1
host cell factor C1
chr3_-_176431423 2.86 ENSRNOT00000037271
Ythdf1
YTH N(6)-methyladenosine RNA binding protein 1
chr10_+_101288489 2.31 ENSRNOT00000003511
Sox9
SRY box 9
chr1_-_72674271 1.87 ENSRNOT00000023744
Kmt5c
lysine methyltransferase 5C
chr16_-_74072541 1.09 ENSRNOT00000089722
AABR07026361.2

chr18_-_72649915 0.97 ENSRNOT00000072205
AABR07032582.1

chr2_+_21931493 0.66 ENSRNOT00000018259
Dhfr
dihydrofolate reductase
chr1_-_200163106 0.64 ENSRNOT00000027644
Mcmbp
minichromosome maintenance complex binding protein
chr10_+_62650719 0.41 ENSRNOT00000010691
Tp53i13
tumor protein p53 inducible protein 13
chr2_-_21931720 0.34 ENSRNOT00000018449
Msh3
mutS homolog 3
chr1_+_193335645 0.04 ENSRNOT00000019640
Lcmt1
leucine carboxyl methyltransferase 1

Network of associatons between targets according to the STRING database.

First level regulatory network of E2f7

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
13.7 54.9 GO:0002331 pre-B cell allelic exclusion(GO:0002331)
11.2 78.3 GO:0006268 DNA unwinding involved in DNA replication(GO:0006268)
11.1 44.5 GO:0034421 post-translational protein acetylation(GO:0034421)
8.1 56.7 GO:0090166 Golgi disassembly(GO:0090166)
7.4 59.2 GO:0016584 nucleosome positioning(GO:0016584)
4.3 72.7 GO:0045653 negative regulation of megakaryocyte differentiation(GO:0045653)
4.0 64.6 GO:0009263 deoxyribonucleotide biosynthetic process(GO:0009263)
4.0 32.0 GO:0090267 positive regulation of spindle checkpoint(GO:0090232) positive regulation of mitotic cell cycle spindle assembly checkpoint(GO:0090267)
3.3 312.7 GO:0006342 chromatin silencing(GO:0006342)
3.2 259.7 GO:0006334 nucleosome assembly(GO:0006334)
3.2 22.1 GO:0043686 co-translational protein modification(GO:0043686)
3.0 11.8 GO:0043570 maintenance of DNA repeat elements(GO:0043570)
2.9 26.2 GO:0033314 mitotic DNA replication checkpoint(GO:0033314)
2.9 8.6 GO:0046601 positive regulation of centriole replication(GO:0046601) regulation of mitotic cytokinesis(GO:1902412)
2.5 63.5 GO:0006270 DNA replication initiation(GO:0006270)
2.5 7.6 GO:0018199 peptidyl-glutamine modification(GO:0018199)
2.4 31.0 GO:0048304 positive regulation of isotype switching to IgG isotypes(GO:0048304)
2.2 11.2 GO:2000327 positive regulation of ligand-dependent nuclear receptor transcription coactivator activity(GO:2000327)
2.2 37.2 GO:0001833 inner cell mass cell proliferation(GO:0001833)
2.1 12.3 GO:0006398 mRNA 3'-end processing by stem-loop binding and cleavage(GO:0006398)
1.9 9.7 GO:0031053 primary miRNA processing(GO:0031053)
1.7 5.2 GO:0018312 peptidyl-serine ADP-ribosylation(GO:0018312) myofibroblast differentiation(GO:0036446) protein poly-ADP-ribosylation(GO:0070212) regulation of myofibroblast differentiation(GO:1904760) regulation of interleukin-17 secretion(GO:1905076) negative regulation of interleukin-17 secretion(GO:1905077)
1.2 15.7 GO:0021796 cerebral cortex regionalization(GO:0021796)
0.8 8.6 GO:0070197 meiotic telomere tethering at nuclear periphery(GO:0044821) meiotic attachment of telomere to nuclear envelope(GO:0070197) chromosome attachment to the nuclear envelope(GO:0097240)
0.7 3.0 GO:0019042 viral latency(GO:0019042) release from viral latency(GO:0019046)
0.7 6.6 GO:0000722 telomere maintenance via recombination(GO:0000722)
0.7 8.4 GO:0014842 regulation of skeletal muscle satellite cell proliferation(GO:0014842)
0.7 4.0 GO:0072757 cellular response to camptothecin(GO:0072757)
0.5 4.4 GO:0016576 histone dephosphorylation(GO:0016576)
0.4 15.2 GO:0000387 spliceosomal snRNP assembly(GO:0000387)
0.4 6.8 GO:0070508 sterol import(GO:0035376) cholesterol import(GO:0070508)
0.4 53.8 GO:0007586 digestion(GO:0007586)
0.3 1.9 GO:0034773 histone H4-K20 trimethylation(GO:0034773)
0.3 11.5 GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000462)
0.2 3.5 GO:0030238 male sex determination(GO:0030238)
0.2 6.8 GO:0006779 porphyrin-containing compound biosynthetic process(GO:0006779)
0.2 21.5 GO:0009156 ribonucleoside monophosphate biosynthetic process(GO:0009156)
0.2 21.1 GO:1902476 chloride transmembrane transport(GO:1902476)
0.1 5.4 GO:0043552 positive regulation of phosphatidylinositol 3-kinase activity(GO:0043552)
0.1 2.9 GO:0045948 positive regulation of translational initiation(GO:0045948)
0.1 7.1 GO:0032781 positive regulation of ATPase activity(GO:0032781)
0.1 0.7 GO:0046654 tetrahydrofolate biosynthetic process(GO:0046654)
0.1 5.9 GO:0006879 cellular iron ion homeostasis(GO:0006879)
0.1 5.7 GO:0071391 cellular response to estrogen stimulus(GO:0071391)
0.0 3.8 GO:0008033 tRNA processing(GO:0008033)
0.0 4.3 GO:0009615 response to virus(GO:0009615)
0.0 0.6 GO:0007062 sister chromatid cohesion(GO:0007062)
0.0 16.0 GO:0007267 cell-cell signaling(GO:0007267)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
18.9 56.7 GO:0097125 cyclin B1-CDK1 complex(GO:0097125)
16.1 64.6 GO:0005971 ribonucleoside-diphosphate reductase complex(GO:0005971)
13.0 142.5 GO:0042555 MCM complex(GO:0042555)
8.0 779.4 GO:0000786 nucleosome(GO:0000786)
4.7 37.2 GO:0000796 condensin complex(GO:0000796)
3.8 11.5 GO:0032301 MutSalpha complex(GO:0032301)
3.4 44.5 GO:0031618 nuclear pericentric heterochromatin(GO:0031618)
2.5 15.2 GO:0034715 pICln-Sm protein complex(GO:0034715)
2.2 11.2 GO:0030015 CCR4-NOT core complex(GO:0030015)
1.4 8.6 GO:0005642 annulate lamellae(GO:0005642)
1.4 12.3 GO:0071204 histone pre-mRNA 3'end processing complex(GO:0071204)
1.3 6.6 GO:0035061 interchromatin granule(GO:0035061)
1.3 22.1 GO:0008250 oligosaccharyltransferase complex(GO:0008250)
0.7 6.8 GO:0014731 spectrin(GO:0008091) spectrin-associated cytoskeleton(GO:0014731)
0.6 37.2 GO:0005637 nuclear inner membrane(GO:0005637)
0.6 5.4 GO:0002199 zona pellucida receptor complex(GO:0002199)
0.5 9.7 GO:1902555 endoribonuclease complex(GO:1902555)
0.4 8.2 GO:0019013 viral nucleocapsid(GO:0019013)
0.3 3.5 GO:0042788 polysomal ribosome(GO:0042788)
0.3 8.7 GO:0044665 MLL1/2 complex(GO:0044665) MLL1 complex(GO:0071339)
0.2 11.5 GO:0022627 cytosolic small ribosomal subunit(GO:0022627)
0.1 1.9 GO:0005721 pericentric heterochromatin(GO:0005721)
0.1 4.3 GO:0045171 intercellular bridge(GO:0045171)
0.1 5.2 GO:0000784 nuclear chromosome, telomeric region(GO:0000784)
0.0 0.3 GO:0032300 mismatch repair complex(GO:0032300)
0.0 10.0 GO:0005813 centrosome(GO:0005813)
0.0 29.5 GO:0005615 extracellular space(GO:0005615)
0.0 11.4 GO:0009986 cell surface(GO:0009986)
0.0 20.4 GO:0005794 Golgi apparatus(GO:0005794)
0.0 2.3 GO:0044798 nuclear transcription factor complex(GO:0044798)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
10.8 64.6 GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731)
6.8 95.7 GO:0003688 DNA replication origin binding(GO:0003688)
6.4 44.5 GO:0004468 lysine N-acetyltransferase activity, acting on acetyl phosphate as donor(GO:0004468)
5.2 26.2 GO:0010997 anaphase-promoting complex binding(GO:0010997)
3.9 11.8 GO:0032142 single guanine insertion binding(GO:0032142)
2.9 32.0 GO:0008821 crossover junction endodeoxyribonuclease activity(GO:0008821)
2.8 56.7 GO:0008353 RNA polymerase II carboxy-terminal domain kinase activity(GO:0008353)
2.7 21.5 GO:0004749 ribose phosphate diphosphokinase activity(GO:0004749)
2.4 9.7 GO:0004525 ribonuclease III activity(GO:0004525) double-stranded RNA-specific ribonuclease activity(GO:0032296)
2.1 8.6 GO:0051425 PTB domain binding(GO:0051425)
1.9 37.2 GO:0043425 bHLH transcription factor binding(GO:0043425)
1.7 15.2 GO:1990446 U1 snRNP binding(GO:1990446)
1.6 46.1 GO:0004003 ATP-dependent DNA helicase activity(GO:0004003)
1.6 22.1 GO:0004576 oligosaccharyl transferase activity(GO:0004576) dolichyl-diphosphooligosaccharide-protein glycotransferase activity(GO:0004579)
1.1 5.4 GO:0071987 WD40-repeat domain binding(GO:0071987)
1.1 21.1 GO:0005229 intracellular calcium activated chloride channel activity(GO:0005229)
1.0 709.6 GO:0046982 protein heterodimerization activity(GO:0046982)
1.0 27.1 GO:0005540 hyaluronic acid binding(GO:0005540)
0.9 3.5 GO:0050682 AF-2 domain binding(GO:0050682)
0.8 28.0 GO:0036002 pre-mRNA binding(GO:0036002)
0.8 6.8 GO:0032052 bile acid binding(GO:0032052)
0.6 59.2 GO:0031490 chromatin DNA binding(GO:0031490)
0.6 1.9 GO:0042799 histone methyltransferase activity (H4-K20 specific)(GO:0042799)
0.6 5.2 GO:0003910 DNA ligase activity(GO:0003909) DNA ligase (ATP) activity(GO:0003910)
0.6 2.9 GO:1990247 N6-methyladenosine-containing RNA binding(GO:1990247)
0.5 54.9 GO:0004519 endonuclease activity(GO:0004519)
0.3 3.8 GO:0004000 adenosine deaminase activity(GO:0004000)
0.3 7.6 GO:0016755 transferase activity, transferring amino-acyl groups(GO:0016755)
0.3 3.0 GO:0043996 histone acetyltransferase activity (H4-K5 specific)(GO:0043995) histone acetyltransferase activity (H4-K8 specific)(GO:0043996) histone acetyltransferase activity (H4-K16 specific)(GO:0046972)
0.3 7.1 GO:0070003 threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003)
0.2 40.7 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.2 0.7 GO:0051870 methotrexate binding(GO:0051870)
0.1 14.4 GO:0031072 heat shock protein binding(GO:0031072)
0.1 9.6 GO:0008080 N-acetyltransferase activity(GO:0008080)
0.1 5.4 GO:0005154 phosphotyrosine binding(GO:0001784) epidermal growth factor receptor binding(GO:0005154)
0.0 8.4 GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978)
0.0 3.3 GO:0000287 magnesium ion binding(GO:0000287)
0.0 9.2 GO:0042803 protein homodimerization activity(GO:0042803)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
5.6 55.7 SA G2 AND M PHASES Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition.
1.2 58.4 PID ATR PATHWAY ATR signaling pathway
0.8 59.3 PID E2F PATHWAY E2F transcription factor network
0.2 5.2 SA CASPASE CASCADE Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade.
0.2 3.5 PID ERB GENOMIC PATHWAY Validated nuclear estrogen receptor beta network
0.2 5.7 PID AR NONGENOMIC PATHWAY Nongenotropic Androgen signaling
0.2 5.4 PID EPHA2 FWD PATHWAY EPHA2 forward signaling
0.1 8.6 PID MYC ACTIV PATHWAY Validated targets of C-MYC transcriptional activation
0.0 2.4 PID P53 DOWNSTREAM PATHWAY Direct p53 effectors

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
12.9 141.8 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA
12.4 321.5 REACTOME RNA POL I PROMOTER OPENING Genes involved in RNA Polymerase I Promoter Opening
5.5 122.0 REACTOME G1 S SPECIFIC TRANSCRIPTION Genes involved in G1/S-Specific Transcription
2.1 27.1 REACTOME HYALURONAN UPTAKE AND DEGRADATION Genes involved in Hyaluronan uptake and degradation
1.1 12.3 REACTOME SLBP DEPENDENT PROCESSING OF REPLICATION DEPENDENT HISTONE PRE MRNAS Genes involved in SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs
0.5 23.8 REACTOME METABOLISM OF NON CODING RNA Genes involved in Metabolism of non-coding RNA
0.5 9.7 REACTOME MICRORNA MIRNA BIOGENESIS Genes involved in MicroRNA (miRNA) Biogenesis
0.2 22.1 REACTOME ASPARAGINE N LINKED GLYCOSYLATION Genes involved in Asparagine N-linked glycosylation
0.2 5.2 REACTOME DOWNREGULATION OF SMAD2 3 SMAD4 TRANSCRIPTIONAL ACTIVITY Genes involved in Downregulation of SMAD2/3:SMAD4 transcriptional activity
0.2 6.8 REACTOME STEROID HORMONES Genes involved in Steroid hormones
0.2 6.8 REACTOME INTERACTION BETWEEN L1 AND ANKYRINS Genes involved in Interaction between L1 and Ankyrins
0.0 3.5 REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY Genes involved in Nuclear Receptor transcription pathway
0.0 4.4 REACTOME MRNA SPLICING Genes involved in mRNA Splicing