GSE53960: rat RNA-Seq transcriptomic Bodymap
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Creb3 | rn6_v1_chr5_+_59063531_59063558 | -0.12 | 3.5e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_+_40247436 Show fit | 36.78 |
ENSRNOT00000079830
|
glutathione peroxidase 3 |
|
chr3_-_175709465 Show fit | 33.30 |
ENSRNOT00000089971
|
GATA binding protein 5 |
|
chr7_+_141249044 Show fit | 33.19 |
ENSRNOT00000084911
|
aquaporin 5 |
|
chr7_+_120749752 Show fit | 29.94 |
ENSRNOT00000087888
|
KDEL endoplasmic reticulum protein retention receptor 3 |
|
chr8_+_58431407 Show fit | 28.75 |
ENSRNOT00000011974
|
sarcolipin |
|
chr2_-_257474733 Show fit | 24.46 |
ENSRNOT00000016967
ENSRNOT00000066780 |
nexilin (F actin binding protein) |
|
chr1_-_141893674 Show fit | 23.99 |
ENSRNOT00000019059
ENSRNOT00000085988 |
isocitrate dehydrogenase (NADP(+)) 2, mitochondrial |
|
chr8_-_25904564 Show fit | 22.84 |
ENSRNOT00000082744
ENSRNOT00000064783 |
T-box 20 |
|
chr19_-_38120578 Show fit | 20.68 |
ENSRNOT00000026873
|
epithelial splicing regulatory protein 2 |
|
chr1_-_101085884 Show fit | 19.89 |
ENSRNOT00000085352
|
reticulocalbin 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
5.5 | 38.7 | GO:0006621 | protein retention in ER lumen(GO:0006621) |
6.4 | 38.2 | GO:0006102 | isocitrate metabolic process(GO:0006102) |
5.3 | 36.8 | GO:0002238 | response to molecule of fungal origin(GO:0002238) |
1.2 | 33.3 | GO:0060575 | intestinal epithelial cell differentiation(GO:0060575) |
4.7 | 33.2 | GO:0015670 | carbon dioxide transport(GO:0015670) |
10.0 | 30.0 | GO:0060577 | pulmonary vein morphogenesis(GO:0060577) |
4.1 | 28.7 | GO:1901894 | regulation of calcium-transporting ATPase activity(GO:1901894) |
2.0 | 24.5 | GO:0048739 | cardiac muscle fiber development(GO:0048739) |
0.7 | 20.7 | GO:0060445 | branching involved in salivary gland morphogenesis(GO:0060445) |
3.1 | 18.8 | GO:1903142 | positive regulation of endothelial cell development(GO:1901552) positive regulation of establishment of endothelial barrier(GO:1903142) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 47.3 | GO:0005615 | extracellular space(GO:0005615) |
0.8 | 46.7 | GO:0009925 | basal plasma membrane(GO:0009925) |
0.1 | 29.0 | GO:0005667 | transcription factor complex(GO:0005667) |
0.8 | 28.7 | GO:0033017 | sarcoplasmic reticulum membrane(GO:0033017) |
0.2 | 24.4 | GO:0030018 | Z disc(GO:0030018) |
0.0 | 23.9 | GO:0031012 | extracellular matrix(GO:0031012) |
0.1 | 20.1 | GO:0005759 | mitochondrial matrix(GO:0005759) |
0.4 | 18.9 | GO:0016235 | aggresome(GO:0016235) |
0.4 | 17.5 | GO:0008180 | COP9 signalosome(GO:0008180) |
0.0 | 17.3 | GO:0005654 | nucleoplasm(GO:0005654) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 40.9 | GO:0001158 | enhancer sequence-specific DNA binding(GO:0001158) |
7.7 | 38.7 | GO:0046923 | ER retention sequence binding(GO:0046923) |
6.4 | 38.2 | GO:0004448 | isocitrate dehydrogenase activity(GO:0004448) |
4.6 | 36.8 | GO:0008430 | selenium binding(GO:0008430) |
2.4 | 33.2 | GO:0015250 | water channel activity(GO:0015250) |
0.0 | 30.6 | GO:0030234 | enzyme regulator activity(GO:0030234) |
0.7 | 30.0 | GO:0001102 | RNA polymerase II activating transcription factor binding(GO:0001102) |
0.2 | 29.4 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
0.5 | 24.5 | GO:0008307 | structural constituent of muscle(GO:0008307) |
0.0 | 24.5 | GO:0003723 | RNA binding(GO:0003723) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 33.2 | PID ECADHERIN STABILIZATION PATHWAY | Stabilization and expansion of the E-cadherin adherens junction |
0.8 | 18.8 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
0.3 | 18.0 | PID PLK1 PATHWAY | PLK1 signaling events |
1.0 | 16.4 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.1 | 15.3 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.5 | 15.0 | PID HDAC CLASSIII PATHWAY | Signaling events mediated by HDAC Class III |
0.3 | 13.3 | PID P38 ALPHA BETA PATHWAY | Regulation of p38-alpha and p38-beta |
0.1 | 11.7 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.1 | 9.5 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.1 | 8.9 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 41.1 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
2.1 | 38.2 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
2.8 | 33.2 | REACTOME PASSIVE TRANSPORT BY AQUAPORINS | Genes involved in Passive Transport by Aquaporins |
0.5 | 29.5 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
0.1 | 25.5 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
1.0 | 23.1 | REACTOME SIGNALING BY HIPPO | Genes involved in Signaling by Hippo |
1.1 | 19.4 | REACTOME ANTIGEN PRESENTATION FOLDING ASSEMBLY AND PEPTIDE LOADING OF CLASS I MHC | Genes involved in Antigen Presentation: Folding, assembly and peptide loading of class I MHC |
0.2 | 19.4 | REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2 | Genes involved in Response to elevated platelet cytosolic Ca2+ |
1.4 | 18.0 | REACTOME TANDEM PORE DOMAIN POTASSIUM CHANNELS | Genes involved in Tandem pore domain potassium channels |
0.4 | 17.9 | REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S | Genes involved in Activation of Chaperone Genes by XBP1(S) |