GSE53960: rat RNA-Seq transcriptomic Bodymap

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Cdx2 Links NCBI RGD Ensembl	ENSRNOG00000032759	caudal type homeo box 2

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Cdx2	rn6_v1_chr12_+_9464026_9464026	-0.10	8.5e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr1_+_201620642 Show fit	16.91	ENSRNOT00000093674	Dmbt1 Links NCBI RGD Ensembl Show fit	deleted in malignant brain tumors 1
chr4_+_99063181 Show fit	13.15	ENSRNOT00000008840	Fabp1 Links NCBI RGD Ensembl Show fit	fatty acid binding protein 1
chr10_+_53778662 Show fit	8.48	ENSRNOT00000045718	Myh2 Links NCBI RGD Ensembl Show fit	myosin heavy chain 2
chrX_+_120624518 Show fit	2.73	ENSRNOT00000007967	Slc6a14 Links NCBI RGD Ensembl Show fit	solute carrier family 6 member 14
chr19_-_11057254 Show fit	2.55	ENSRNOT00000025559	Herpud1 Links NCBI RGD Ensembl Show fit	homocysteine inducible ER protein with ubiquitin like domain 1
chr14_+_23405717 Show fit	1.68	ENSRNOT00000029805	Tmprss11c Links NCBI RGD Ensembl Show fit	transmembrane protease, serine 11C
chr1_+_103145939 Show fit	1.59	ENSRNOT00000040529	AABR07003273.1 Links NCBI RGD Ensembl Show fit
chr11_+_85618714 Show fit	0.75	ENSRNOT00000074614	AC109901.1 Links NCBI RGD Ensembl Show fit
chr10_-_87351030 Show fit	0.50	ENSRNOT00000034889 ENSRNOT00000091152	Krt20 Links NCBI RGD Ensembl Show fit	keratin 20
chr2_-_43067956 Show fit	0.26	ENSRNOT00000090616	Gpbp1 Links NCBI RGD Ensembl Show fit	GC-rich promoter binding protein 1
chr2_+_85305225 Show fit	0.16	ENSRNOT00000015904	Tas2r119 Links NCBI RGD Ensembl Show fit	taste receptor, type 2, member 119

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
4.4	13.2	GO:0051977	lysophospholipid transport(GO:0051977)
0.8	16.9	GO:0001833	inner cell mass cell proliferation(GO:0001833)
0.7	8.5	GO:0001778	plasma membrane repair(GO:0001778)
0.5	2.5	GO:1903071	positive regulation of ER-associated ubiquitin-dependent protein catabolic process(GO:1903071)
0.2	1.7	GO:0097264	self proteolysis(GO:0097264)
0.0	0.5	GO:0045109	intermediate filament organization(GO:0045109)
0.0	2.7	GO:0006836	neurotransmitter transport(GO:0006836)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.3	13.2	GO:0045179	apical cortex(GO:0045179)
0.9	8.5	GO:0005826	actomyosin contractile ring(GO:0005826)
0.9	16.9	GO:0042589	zymogen granule membrane(GO:0042589)
0.8	2.5	GO:1990037	Lewy body core(GO:1990037)
0.0	2.7	GO:0031526	brush border membrane(GO:0031526)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
2.4	16.9	GO:0035375	zymogen binding(GO:0035375)
2.2	13.2	GO:0005324	long-chain fatty acid transporter activity(GO:0005324)
0.1	2.7	GO:0005328	neurotransmitter:sodium symporter activity(GO:0005328)
0.0	8.5	GO:0003779	actin binding(GO:0003779)
0.0	2.5	GO:0044325	ion channel binding(GO:0044325)
0.0	0.2	GO:0033038	bitter taste receptor activity(GO:0033038)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	8.5	PID INTEGRIN A4B1 PATHWAY	Alpha4 beta1 integrin signaling events
0.1	16.9	NABA ECM GLYCOPROTEINS	Genes encoding structural ECM glycoproteins

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	2.7	REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS	Genes involved in Na+/Cl- dependent neurotransmitter transporters
0.1	13.2	REACTOME PPARA ACTIVATES GENE EXPRESSION	Genes involved in PPARA Activates Gene Expression
0.1	2.5	REACTOME ACTIVATION OF GENES BY ATF4	Genes involved in Activation of Genes by ATF4