PRJNA438478: RNAseq of wild type zebrafish germline

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
znf410 Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000008218	zinc finger protein 410

Gene	Promoter	Pearson corr. coef.	P-value	Plot
znf410	dr11_v1_chr20_+_54356540_54356540	-0.96	3.6e-10	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr16_-_31791165 Show fit	7.22	ENSDART00000148389	chd4b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chromodomain helicase DNA binding protein 4b
chr19_-_5058908 Show fit	4.50	ENSDART00000130062	chd4a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chromodomain helicase DNA binding protein 4a
chr19_-_5058515 Show fit	1.43	ENSDART00000150980	chd4a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chromodomain helicase DNA binding protein 4a
chr10_-_35186310 Show fit	0.74	ENSDART00000127805	pom121 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	POM121 transmembrane nucleoporin
chr6_+_18359306 Show fit	0.59	ENSDART00000157796	cbx8b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chromobox homolog 8b
chr13_-_11800281 Show fit	0.25	ENSDART00000079392	zmp:0000000662 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zmp:0000000662
chr4_+_76336061 Show fit	0.20	ENSDART00000174362	zgc:171673 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:171673
chr4_-_70849761 Show fit	0.13	ENSDART00000168745	im:7141269 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	im:7141269
chr10_-_94184 Show fit	0.10	ENSDART00000146125	ttc3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tetratricopeptide repeat domain 3
chr19_-_977849 Show fit	0.09	ENSDART00000172303	CABZ01088282.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr5_+_59534286 Show fit	0.04	ENSDART00000189341	gtf2ird1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	GTF2I repeat domain containing 1

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	5.9	GO:0031101	fin regeneration(GO:0031101)
0.0	0.7	GO:0006405	RNA export from nucleus(GO:0006405)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.3	5.9	GO:0090545	NuRD complex(GO:0016581) CHD-type complex(GO:0090545)
0.0	0.7	GO:0005643	nuclear pore(GO:0005643)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	5.9	GO:0001103	RNA polymerase II repressing transcription factor binding(GO:0001103)
0.1	7.2	GO:0003678	DNA helicase activity(GO:0003678)
0.0	0.7	GO:0008139	nuclear localization sequence binding(GO:0008139)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.7	REACTOME TRANSPORT OF RIBONUCLEOPROTEINS INTO THE HOST NUCLEUS	Genes involved in Transport of Ribonucleoproteins into the Host Nucleus