PRJNA438478: RNAseq of wild type zebrafish germline
Gene Symbol | Gene ID | Gene Info |
---|---|---|
zbtb7a
|
ENSDARG00000039899 | zinc finger and BTB domain containing 7a |
zbtb7c
|
ENSDARG00000100985 | zinc finger and BTB domain containing 7C |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
zbtb7a | dr11_v1_chr22_-_20379045_20379045 | 0.44 | 6.7e-02 | Click! |
zbtb7c | dr11_v1_chr21_-_3201027_3201027 | 0.38 | 1.2e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr2_-_24488652 | 1.79 |
ENSDART00000052067
|
insl3
|
insulin-like 3 (Leydig cell) |
chr4_+_17279966 | 1.52 |
ENSDART00000067005
ENSDART00000137487 |
bcat1
|
branched chain amino-acid transaminase 1, cytosolic |
chr10_-_24371312 | 1.19 |
ENSDART00000149362
|
pitpnab
|
phosphatidylinositol transfer protein, alpha b |
chr20_+_25340814 | 0.91 |
ENSDART00000063028
|
ctgfa
|
connective tissue growth factor a |
chr18_+_5547185 | 0.89 |
ENSDART00000193977
|
nnt2
|
nicotinamide nucleotide transhydrogenase 2 |
chr2_-_32501501 | 0.87 |
ENSDART00000181309
|
faim2a
|
Fas apoptotic inhibitory molecule 2a |
chr1_-_52128425 | 0.75 |
ENSDART00000149939
|
rad23aa
|
RAD23 homolog A, nucleotide excision repair protein a |
chr25_-_12982193 | 0.73 |
ENSDART00000159617
|
ccl39.5
|
chemokine (C-C motif) ligand 39, duplicate 5 |
chr20_-_1383916 | 0.68 |
ENSDART00000152373
|
scara5
|
scavenger receptor class A, member 5 (putative) |
chr11_-_3552067 | 0.62 |
ENSDART00000163656
|
CAMK2N1
|
si:dkey-33m11.6 |
chr25_+_18436301 | 0.61 |
ENSDART00000056180
|
cep41
|
centrosomal protein 41 |
chr16_+_41517188 | 0.59 |
ENSDART00000049976
|
si:dkey-11p23.7
|
si:dkey-11p23.7 |
chr3_-_39696066 | 0.58 |
ENSDART00000015393
|
b9d1
|
B9 protein domain 1 |
chr14_-_45346558 | 0.56 |
ENSDART00000090844
|
zgc:153018
|
zgc:153018 |
chr11_+_807153 | 0.55 |
ENSDART00000173289
|
vgll4b
|
vestigial-like family member 4b |
chr3_-_39695856 | 0.50 |
ENSDART00000148247
|
b9d1
|
B9 protein domain 1 |
chr4_-_5826320 | 0.50 |
ENSDART00000165354
|
foxm1
|
forkhead box M1 |
chr19_-_9472893 | 0.49 |
ENSDART00000045565
ENSDART00000137505 |
vamp1
|
vesicle-associated membrane protein 1 |
chr20_+_36629173 | 0.47 |
ENSDART00000161241
|
ephx1
|
epoxide hydrolase 1, microsomal (xenobiotic) |
chr4_-_17725008 | 0.47 |
ENSDART00000016658
|
chpt1
|
choline phosphotransferase 1 |
chr3_+_14388010 | 0.46 |
ENSDART00000171726
ENSDART00000165452 |
tmem56b
|
transmembrane protein 56b |
chr19_+_46095210 | 0.45 |
ENSDART00000159753
|
stmnd1
|
stathmin domain containing 1 |
chr5_+_19337108 | 0.42 |
ENSDART00000089078
|
acacb
|
acetyl-CoA carboxylase beta |
chr10_+_33982010 | 0.42 |
ENSDART00000180431
|
fryb
|
furry homolog b (Drosophila) |
chr1_-_19502322 | 0.38 |
ENSDART00000181888
ENSDART00000044030 |
kitb
|
v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog b |
chr12_+_47162761 | 0.37 |
ENSDART00000192339
ENSDART00000167726 |
RYR2
|
ryanodine receptor 2 |
chr19_-_10243148 | 0.36 |
ENSDART00000148073
|
shisa7b
|
shisa family member 7 |
chr16_+_3004422 | 0.36 |
ENSDART00000189969
|
CABZ01043952.1
|
|
chr21_+_25187210 | 0.35 |
ENSDART00000101147
ENSDART00000167528 |
si:dkey-183i3.5
|
si:dkey-183i3.5 |
chr14_-_21219659 | 0.34 |
ENSDART00000089867
|
ppp2r2cb
|
protein phosphatase 2, regulatory subunit B, gamma b |
chr1_-_59141715 | 0.33 |
ENSDART00000164941
ENSDART00000138870 |
si:ch1073-110a20.1
|
si:ch1073-110a20.1 |
chr24_-_40744672 | 0.31 |
ENSDART00000160672
|
CU633479.1
|
|
chr10_+_26515946 | 0.30 |
ENSDART00000134276
|
synj1
|
synaptojanin 1 |
chr7_-_22956889 | 0.30 |
ENSDART00000101447
|
tnfsf10l
|
TNF superfamily member 10, like |
chr6_-_19305589 | 0.28 |
ENSDART00000165484
|
jpt1a
|
Jupiter microtubule associated homolog 1a |
chr22_+_3045495 | 0.28 |
ENSDART00000164061
|
LO017843.1
|
|
chr23_+_45229198 | 0.28 |
ENSDART00000172445
|
ttc39b
|
tetratricopeptide repeat domain 39B |
chr17_+_53418445 | 0.28 |
ENSDART00000097631
|
slc9a1b
|
solute carrier family 9 member A1b |
chr11_+_24900123 | 0.26 |
ENSDART00000044987
ENSDART00000148023 |
timm17a
|
translocase of inner mitochondrial membrane 17 homolog A (yeast) |
chr21_-_4695583 | 0.25 |
ENSDART00000031425
|
zgc:55582
|
zgc:55582 |
chr21_+_44112914 | 0.25 |
ENSDART00000062836
|
fgf1b
|
fibroblast growth factor 1b |
chr18_-_50799510 | 0.23 |
ENSDART00000174373
|
taldo1
|
transaldolase 1 |
chr2_-_38225388 | 0.23 |
ENSDART00000146485
ENSDART00000128043 |
acin1a
|
apoptotic chromatin condensation inducer 1a |
chr23_-_36857964 | 0.22 |
ENSDART00000188822
ENSDART00000134061 ENSDART00000093061 |
hipk1a
|
homeodomain interacting protein kinase 1a |
chr19_-_42607451 | 0.22 |
ENSDART00000004392
|
fkbp9
|
FK506 binding protein 9 |
chr3_-_3328097 | 0.22 |
ENSDART00000193140
|
tmem184bb
|
transmembrane protein 184bb |
chr2_-_54054225 | 0.21 |
ENSDART00000167239
|
CABZ01050249.1
|
|
chr1_+_10683843 | 0.21 |
ENSDART00000054879
|
zgc:103678
|
zgc:103678 |
chr2_-_20323901 | 0.20 |
ENSDART00000125531
|
plppr5a
|
phospholipid phosphatase related 5a |
chr17_-_11151655 | 0.20 |
ENSDART00000156383
|
CU179699.1
|
|
chr15_+_39096736 | 0.18 |
ENSDART00000129511
ENSDART00000014877 |
robo2
|
roundabout, axon guidance receptor, homolog 2 (Drosophila) |
chr9_+_1505206 | 0.17 |
ENSDART00000093427
ENSDART00000137230 |
pde11a
|
phosphodiesterase 11a |
chr9_-_55586151 | 0.17 |
ENSDART00000181886
|
arsh
|
arylsulfatase H |
chr10_-_14488472 | 0.16 |
ENSDART00000101298
ENSDART00000138161 |
galt
|
galactose-1-phosphate uridylyltransferase |
chr23_+_28582865 | 0.14 |
ENSDART00000020296
|
l1cama
|
L1 cell adhesion molecule, paralog a |
chr15_-_3252727 | 0.14 |
ENSDART00000131173
|
stoml3a
|
stomatin (EPB72)-like 3a |
chr16_-_31686602 | 0.13 |
ENSDART00000170357
|
c1s
|
complement component 1, s subcomponent |
chr8_-_52091696 | 0.13 |
ENSDART00000108923
|
vps13a
|
vacuolar protein sorting 13 homolog A (S. cerevisiae) |
chr21_-_2124497 | 0.12 |
ENSDART00000166003
|
si:rp71-1h20.5
|
si:rp71-1h20.5 |
chr21_-_13493608 | 0.11 |
ENSDART00000192307
|
nsmfa
|
NMDA receptor synaptonuclear signaling and neuronal migration factor a |
chr5_-_41560874 | 0.11 |
ENSDART00000136702
|
dnajb5
|
DnaJ (Hsp40) homolog, subfamily B, member 5 |
chr8_-_54304381 | 0.11 |
ENSDART00000184177
|
RHO (1 of many)
|
rhodopsin |
chr7_-_33350082 | 0.11 |
ENSDART00000008785
|
anp32a
|
acidic (leucine-rich) nuclear phosphoprotein 32 family, member A |
chr2_-_10896745 | 0.11 |
ENSDART00000114609
|
cdcp2
|
CUB domain containing protein 2 |
chr21_+_19345558 | 0.10 |
ENSDART00000184733
|
hpse
|
heparanase |
chr2_-_9544161 | 0.10 |
ENSDART00000124425
|
slc25a24l
|
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24, like |
chr20_+_37300699 | 0.09 |
ENSDART00000067053
|
vta1
|
vesicle (multivesicular body) trafficking 1 |
chr25_-_12809361 | 0.09 |
ENSDART00000162750
|
ca5a
|
carbonic anhydrase Va |
chr20_-_35012093 | 0.09 |
ENSDART00000062761
|
cnstb
|
consortin, connexin sorting protein b |
chr7_+_38962459 | 0.08 |
ENSDART00000173851
|
dgkza
|
diacylglycerol kinase, zeta a |
chr7_-_22956716 | 0.08 |
ENSDART00000122113
|
tnfsf10l
|
TNF superfamily member 10, like |
chr11_+_6010177 | 0.08 |
ENSDART00000170047
ENSDART00000022526 ENSDART00000161001 ENSDART00000188999 |
gtpbp3
|
GTP binding protein 3, mitochondrial |
chr22_+_17536989 | 0.06 |
ENSDART00000149531
|
hnrnpm
|
heterogeneous nuclear ribonucleoprotein M |
chr16_-_26435431 | 0.06 |
ENSDART00000187526
|
megf8
|
multiple EGF-like-domains 8 |
chr5_-_38094130 | 0.06 |
ENSDART00000131831
|
si:ch211-284e13.4
|
si:ch211-284e13.4 |
chr20_+_88168 | 0.05 |
ENSDART00000149283
|
zgc:112001
|
zgc:112001 |
chr4_-_17263210 | 0.05 |
ENSDART00000147853
|
lrmp
|
lymphoid-restricted membrane protein |
chr5_-_51484156 | 0.05 |
ENSDART00000162064
|
CR388055.1
|
|
chr13_+_29771463 | 0.05 |
ENSDART00000134424
ENSDART00000138332 ENSDART00000134330 ENSDART00000160944 ENSDART00000076992 ENSDART00000160921 |
pax2a
|
paired box 2a |
chr1_+_47585700 | 0.04 |
ENSDART00000153746
ENSDART00000084457 |
sh3pxd2aa
|
SH3 and PX domains 2Aa |
chr7_+_12950507 | 0.04 |
ENSDART00000067629
ENSDART00000158004 |
saa
|
serum amyloid A |
chr5_-_27993972 | 0.04 |
ENSDART00000175819
|
ppp3cca
|
protein phosphatase 3, catalytic subunit, gamma isozyme, a |
chr21_+_19925910 | 0.04 |
ENSDART00000111694
ENSDART00000132653 |
tnksa
|
tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase a |
chr16_+_22618620 | 0.03 |
ENSDART00000185728
ENSDART00000041625 |
chrnb2b
|
cholinergic receptor, nicotinic, beta 2b |
chr6_-_19042294 | 0.03 |
ENSDART00000159461
|
si:rp71-81e14.2
|
si:rp71-81e14.2 |
chr7_+_38962207 | 0.03 |
ENSDART00000173565
|
dgkza
|
diacylglycerol kinase, zeta a |
chr5_+_22510639 | 0.03 |
ENSDART00000080919
|
rpl36a
|
ribosomal protein L36A |
chr1_-_59313465 | 0.03 |
ENSDART00000158067
ENSDART00000159419 |
txndc11
|
thioredoxin domain containing 11 |
chr9_+_35860975 | 0.03 |
ENSDART00000134447
|
rcan1a
|
regulator of calcineurin 1a |
chr23_-_10914275 | 0.02 |
ENSDART00000112965
|
pdzrn3a
|
PDZ domain containing RING finger 3a |
chr1_+_9557212 | 0.02 |
ENSDART00000111131
|
elfn1b
|
extracellular leucine-rich repeat and fibronectin type III domain containing 1b |
chr6_+_41181869 | 0.02 |
ENSDART00000002046
|
opn1mw1
|
opsin 1 (cone pigments), medium-wave-sensitive, 1 |
chr24_-_26304386 | 0.02 |
ENSDART00000175416
|
otos
|
otospiralin |
chr6_+_8339298 | 0.02 |
ENSDART00000151672
|
si:ch211-276a17.5
|
si:ch211-276a17.5 |
chr18_+_19975787 | 0.01 |
ENSDART00000138103
|
skor1b
|
SKI family transcriptional corepressor 1b |
chr16_+_40463365 | 0.01 |
ENSDART00000113147
|
BX072576.1
|
|
chr7_+_16963091 | 0.01 |
ENSDART00000173770
|
nav2a
|
neuron navigator 2a |
chr14_-_4556896 | 0.01 |
ENSDART00000044678
ENSDART00000192863 |
GABRA2
|
gamma-aminobutyric acid type A receptor alpha2 subunit |
chr20_+_50852356 | 0.01 |
ENSDART00000167517
ENSDART00000168396 |
gphnb
|
gephyrin b |
chr12_-_44016898 | 0.01 |
ENSDART00000175304
|
si:dkey-201i2.4
|
si:dkey-201i2.4 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 1.5 | GO:0009098 | leucine biosynthetic process(GO:0009098) |
0.2 | 0.9 | GO:0006740 | NADPH regeneration(GO:0006740) |
0.1 | 0.6 | GO:0045124 | regulation of bone resorption(GO:0045124) |
0.1 | 0.4 | GO:2001295 | malonyl-CoA biosynthetic process(GO:2001295) |
0.1 | 0.7 | GO:0070207 | protein homotrimerization(GO:0070207) |
0.1 | 0.4 | GO:0038093 | Fc receptor signaling pathway(GO:0038093) |
0.0 | 0.2 | GO:0009052 | pentose-phosphate shunt, non-oxidative branch(GO:0009052) |
0.0 | 0.4 | GO:0048172 | regulation of short-term neuronal synaptic plasticity(GO:0048172) |
0.0 | 0.4 | GO:2001238 | positive regulation of extrinsic apoptotic signaling pathway(GO:2001238) |
0.0 | 0.5 | GO:0071156 | regulation of cell cycle arrest(GO:0071156) |
0.0 | 0.2 | GO:0010754 | negative regulation of cGMP-mediated signaling(GO:0010754) |
0.0 | 0.3 | GO:0070262 | peptidyl-serine dephosphorylation(GO:0070262) |
0.0 | 0.5 | GO:0035493 | SNARE complex assembly(GO:0035493) |
0.0 | 0.2 | GO:0033499 | galactose catabolic process(GO:0019388) galactose catabolic process via UDP-galactose(GO:0033499) |
0.0 | 0.6 | GO:0018095 | protein polyglutamylation(GO:0018095) |
0.0 | 0.1 | GO:0042998 | positive regulation of Golgi to plasma membrane protein transport(GO:0042998) positive regulation of establishment of protein localization to plasma membrane(GO:0090004) |
0.0 | 0.3 | GO:0098719 | sodium ion import(GO:0097369) sodium ion import across plasma membrane(GO:0098719) sodium ion import into cell(GO:1990118) |
0.0 | 0.3 | GO:0001867 | complement activation, lectin pathway(GO:0001867) |
0.0 | 0.3 | GO:0046549 | retinal cone cell development(GO:0046549) |
0.0 | 1.2 | GO:0015914 | phospholipid transport(GO:0015914) |
0.0 | 0.1 | GO:0045053 | protein retention in Golgi apparatus(GO:0045053) |
0.0 | 0.2 | GO:0050975 | sensory perception of touch(GO:0050975) |
0.0 | 0.6 | GO:0035329 | hippo signaling(GO:0035329) |
0.0 | 0.7 | GO:0048247 | lymphocyte chemotaxis(GO:0048247) |
0.0 | 0.1 | GO:0035046 | pronuclear migration(GO:0035046) |
0.0 | 0.8 | GO:0006289 | nucleotide-excision repair(GO:0006289) |
0.0 | 0.1 | GO:2000815 | regulation of mRNA stability involved in response to stress(GO:0010610) regulation of mRNA stability involved in response to oxidative stress(GO:2000815) |
0.0 | 0.3 | GO:0030324 | respiratory tube development(GO:0030323) lung development(GO:0030324) |
0.0 | 0.3 | GO:0030150 | protein import into mitochondrial matrix(GO:0030150) |
0.0 | 0.5 | GO:0009636 | response to toxic substance(GO:0009636) |
0.0 | 0.2 | GO:0042771 | intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator(GO:0042771) |
0.0 | 1.1 | GO:0007224 | smoothened signaling pathway(GO:0007224) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.1 | GO:0036038 | MKS complex(GO:0036038) |
0.0 | 0.3 | GO:0005744 | mitochondrial inner membrane presequence translocase complex(GO:0005744) |
0.0 | 0.4 | GO:0032591 | dendritic spine membrane(GO:0032591) |
0.0 | 0.1 | GO:0044295 | axonal growth cone(GO:0044295) |
0.0 | 0.3 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 1.5 | GO:0004084 | branched-chain-amino-acid transaminase activity(GO:0004084) L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656) |
0.2 | 0.9 | GO:0008746 | NAD(P)+ transhydrogenase activity(GO:0008746) oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor(GO:0016652) |
0.2 | 1.1 | GO:0008158 | hedgehog receptor activity(GO:0008158) |
0.2 | 1.2 | GO:0008526 | phosphatidylinositol transporter activity(GO:0008526) |
0.2 | 0.5 | GO:0033961 | cis-stilbene-oxide hydrolase activity(GO:0033961) |
0.1 | 0.6 | GO:0001223 | transcription coactivator binding(GO:0001223) |
0.1 | 0.4 | GO:0003989 | acetyl-CoA carboxylase activity(GO:0003989) |
0.1 | 0.5 | GO:0004142 | diacylglycerol cholinephosphotransferase activity(GO:0004142) |
0.1 | 0.8 | GO:0070628 | proteasome binding(GO:0070628) |
0.0 | 0.7 | GO:0031726 | CCR1 chemokine receptor binding(GO:0031726) CCR4 chemokine receptor binding(GO:0031729) |
0.0 | 0.6 | GO:0070740 | protein-glutamic acid ligase activity(GO:0070739) tubulin-glutamic acid ligase activity(GO:0070740) |
0.0 | 0.3 | GO:0015450 | P-P-bond-hydrolysis-driven protein transmembrane transporter activity(GO:0015450) |
0.0 | 0.2 | GO:0016744 | transferase activity, transferring aldehyde or ketonic groups(GO:0016744) |
0.0 | 0.2 | GO:0004118 | cGMP-stimulated cyclic-nucleotide phosphodiesterase activity(GO:0004118) |
0.0 | 0.1 | GO:0008046 | axon guidance receptor activity(GO:0008046) |
0.0 | 0.3 | GO:0015386 | monovalent cation:proton antiporter activity(GO:0005451) sodium:proton antiporter activity(GO:0015385) potassium:proton antiporter activity(GO:0015386) |
0.0 | 0.1 | GO:0071253 | connexin binding(GO:0071253) |
0.0 | 0.3 | GO:0034596 | phosphatidylinositol phosphate 4-phosphatase activity(GO:0034596) |
0.0 | 0.2 | GO:0070569 | uridylyltransferase activity(GO:0070569) |
0.0 | 0.5 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.0 | 1.8 | GO:0005179 | hormone activity(GO:0005179) |
0.0 | 0.4 | GO:0005164 | tumor necrosis factor receptor binding(GO:0005164) |
0.0 | 0.7 | GO:0005044 | scavenger receptor activity(GO:0005044) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.5 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.0 | 0.5 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.0 | 1.9 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.5 | REACTOME BRANCHED CHAIN AMINO ACID CATABOLISM | Genes involved in Branched-chain amino acid catabolism |
0.0 | 0.5 | REACTOME SYNTHESIS OF PC | Genes involved in Synthesis of PC |
0.0 | 0.5 | REACTOME PROTEOLYTIC CLEAVAGE OF SNARE COMPLEX PROTEINS | Genes involved in Proteolytic cleavage of SNARE complex proteins |
0.0 | 0.4 | REACTOME ACTIVATED AMPK STIMULATES FATTY ACID OXIDATION IN MUSCLE | Genes involved in Activated AMPK stimulates fatty-acid oxidation in muscle |
0.0 | 1.8 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
0.0 | 0.2 | REACTOME THE ACTIVATION OF ARYLSULFATASES | Genes involved in The activation of arylsulfatases |
0.0 | 0.6 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
0.0 | 0.1 | REACTOME CREATION OF C4 AND C2 ACTIVATORS | Genes involved in Creation of C4 and C2 activators |
0.0 | 0.2 | REACTOME CGMP EFFECTS | Genes involved in cGMP effects |