Project
PRJNA438478: RNAseq of wild type zebrafish germline
Navigation
Downloads
Results for yy1a+yy1b
Z-value: 1.91
Motif logo
Transcription factors associated with yy1a+yy1b
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| yy1a | dr11_v1_chr17_-_30863252_30863252 | -0.74 | 5.1e-04 | Click! |
| yy1b | dr11_v1_chr20_-_54435287_54435287 | -0.64 | 4.3e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr14_-_41468892 Show fit | 5.44 |
ENSDART00000173099
ENSDART00000003170 |
MID1 interacting protein 1, like |
|
| chr1_-_18811517 Show fit | 4.97 |
ENSDART00000142026
|
si:dkey-167i21.2 |
|
| chr23_-_44577885 Show fit | 4.59 |
ENSDART00000166654
|
si:ch73-160p18.4 |
|
| chr15_-_35126332 Show fit | 4.34 |
ENSDART00000007636
|
zgc:55413 |
|
| chr11_+_14333441 Show fit | 3.94 |
ENSDART00000171969
|
polypyrimidine tract binding protein 1b |
|
| chr2_+_68789 Show fit | 3.67 |
ENSDART00000058569
|
claudin 1 |
|
| chr9_+_2393764 Show fit | 3.67 |
ENSDART00000172624
|
chimerin 1 |
|
| chr11_+_18053333 Show fit | 3.65 |
ENSDART00000075750
|
zgc:175135 |
|
| chr11_+_18130300 Show fit | 3.63 |
ENSDART00000169146
|
zgc:175135 |
|
| chr21_-_13690712 Show fit | 3.53 |
ENSDART00000065817
|
POU domain, class 5, transcription factor 3 |
Network of associatons between targets according to the STRING database.
First level regulatory network of yy1a+yy1b
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 9.5 | GO:0048545 | response to steroid hormone(GO:0048545) |
| 0.1 | 8.5 | GO:1902593 | protein import into nucleus(GO:0006606) protein targeting to nucleus(GO:0044744) single-organism nuclear import(GO:1902593) |
| 0.0 | 7.3 | GO:0008380 | RNA splicing(GO:0008380) |
| 0.0 | 7.0 | GO:0043484 | regulation of RNA splicing(GO:0043484) |
| 0.2 | 6.7 | GO:0060415 | muscle tissue morphogenesis(GO:0060415) |
| 0.1 | 6.5 | GO:0071166 | ribonucleoprotein complex localization(GO:0071166) |
| 0.0 | 5.4 | GO:0090630 | activation of GTPase activity(GO:0090630) |
| 0.4 | 5.0 | GO:0036353 | histone H2A-K119 monoubiquitination(GO:0036353) |
| 0.5 | 4.9 | GO:0044030 | regulation of DNA methylation(GO:0044030) |
| 0.1 | 4.4 | GO:0070830 | apical junction assembly(GO:0043297) bicellular tight junction assembly(GO:0070830) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 11.5 | GO:0070160 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
| 0.1 | 9.3 | GO:0072686 | mitotic spindle(GO:0072686) |
| 0.0 | 9.3 | GO:0005794 | Golgi apparatus(GO:0005794) |
| 0.0 | 7.9 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.2 | 7.2 | GO:0016605 | PML body(GO:0016605) |
| 0.2 | 5.5 | GO:0035102 | PRC1 complex(GO:0035102) |
| 0.1 | 5.3 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
| 0.1 | 4.6 | GO:0005871 | kinesin complex(GO:0005871) |
| 0.0 | 4.3 | GO:0005795 | Golgi stack(GO:0005795) |
| 0.1 | 4.1 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 9.0 | GO:0003712 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
| 0.0 | 8.2 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
| 0.0 | 7.8 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.0 | 7.8 | GO:0005096 | GTPase activator activity(GO:0005096) |
| 0.0 | 7.5 | GO:0003723 | RNA binding(GO:0003723) |
| 0.1 | 7.2 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 6.9 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
| 0.1 | 6.5 | GO:0003697 | single-stranded DNA binding(GO:0003697) |
| 0.1 | 6.0 | GO:0005484 | SNAP receptor activity(GO:0005484) |
| 0.2 | 5.5 | GO:1990841 | promoter-specific chromatin binding(GO:1990841) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 8.1 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.2 | 6.4 | PID RAC1 REG PATHWAY | Regulation of RAC1 activity |
| 0.2 | 5.1 | PID NECTIN PATHWAY | Nectin adhesion pathway |
| 0.1 | 4.5 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.2 | 3.6 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
| 0.2 | 3.0 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
| 0.2 | 2.9 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
| 0.1 | 2.9 | PID NETRIN PATHWAY | Netrin-mediated signaling events |
| 0.1 | 2.7 | PID IL1 PATHWAY | IL1-mediated signaling events |
| 0.1 | 2.6 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 4.9 | REACTOME CIRCADIAN REPRESSION OF EXPRESSION BY REV ERBA | Genes involved in Circadian Repression of Expression by REV-ERBA |
| 0.4 | 4.5 | REACTOME SIGNALING BY NODAL | Genes involved in Signaling by NODAL |
| 0.3 | 4.4 | REACTOME MICRORNA MIRNA BIOGENESIS | Genes involved in MicroRNA (miRNA) Biogenesis |
| 0.0 | 4.2 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.4 | 3.9 | REACTOME TIGHT JUNCTION INTERACTIONS | Genes involved in Tight junction interactions |
| 0.2 | 3.8 | REACTOME CALNEXIN CALRETICULIN CYCLE | Genes involved in Calnexin/calreticulin cycle |
| 0.1 | 3.7 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.2 | 3.6 | REACTOME SYNTHESIS OF PIPS AT THE GOLGI MEMBRANE | Genes involved in Synthesis of PIPs at the Golgi membrane |
| 0.1 | 3.6 | REACTOME CYTOCHROME P450 ARRANGED BY SUBSTRATE TYPE | Genes involved in Cytochrome P450 - arranged by substrate type |
| 0.2 | 3.4 | REACTOME RNA POL III TRANSCRIPTION TERMINATION | Genes involved in RNA Polymerase III Transcription Termination |