PRJNA438478: RNAseq of wild type zebrafish germline
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
thraa | dr11_v1_chr3_-_34724879_34724879 | -0.91 | 2.2e-07 | Click! |
thrab | dr11_v1_chr12_-_22039350_22039350 | -0.82 | 3.6e-05 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr1_+_57311901 Show fit | 2.90 |
ENSDART00000149397
|
mycbp associated protein |
|
chr17_-_24838927 Show fit | 2.42 |
ENSDART00000123259
|
|
|
chr12_+_49125510 Show fit | 2.15 |
ENSDART00000185804
|
|
|
chr16_-_42969598 Show fit | 1.98 |
ENSDART00000156011
|
si:ch211-135n15.3 |
|
chr4_+_18489207 Show fit | 1.98 |
ENSDART00000135276
|
si:dkey-202b22.5 |
|
chr20_-_43462190 Show fit | 1.85 |
ENSDART00000100697
|
Pim proto-oncogene, serine/threonine kinase, related 133 |
|
chr25_+_4954220 Show fit | 1.80 |
ENSDART00000156034
|
si:ch73-265h17.2 |
|
chr5_+_13353866 Show fit | 1.72 |
ENSDART00000099611
|
chemokine (C-C motif) ligand 19a, tandem duplicate 1 |
|
chr6_+_475264 Show fit | 1.67 |
ENSDART00000193615
|
|
|
chr7_-_40738774 Show fit | 1.65 |
ENSDART00000084179
|
ring finger protein 32 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 9.3 | GO:0046777 | protein autophosphorylation(GO:0046777) |
0.0 | 1.9 | GO:0002088 | lens development in camera-type eye(GO:0002088) |
0.1 | 1.8 | GO:0000712 | resolution of meiotic recombination intermediates(GO:0000712) |
0.0 | 1.7 | GO:0048247 | lymphocyte chemotaxis(GO:0048247) |
0.5 | 1.6 | GO:0032369 | negative regulation of lipid transport(GO:0032369) |
0.1 | 1.3 | GO:0007168 | receptor guanylyl cyclase signaling pathway(GO:0007168) |
0.2 | 1.2 | GO:0000706 | meiotic DNA double-strand break processing(GO:0000706) |
0.1 | 1.2 | GO:0021984 | adenohypophysis development(GO:0021984) |
0.2 | 1.1 | GO:0090527 | actin filament reorganization(GO:0090527) |
0.2 | 1.1 | GO:1902766 | skeletal muscle satellite cell migration(GO:1902766) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.5 | GO:0031305 | integral component of mitochondrial inner membrane(GO:0031305) |
0.0 | 1.3 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.2 | 1.2 | GO:0000801 | central element(GO:0000801) |
0.0 | 1.1 | GO:0097610 | cleavage furrow(GO:0032154) cell surface furrow(GO:0097610) |
0.0 | 0.7 | GO:0001725 | stress fiber(GO:0001725) contractile actin filament bundle(GO:0097517) |
0.1 | 0.4 | GO:0036156 | inner dynein arm(GO:0036156) |
0.0 | 0.2 | GO:0045283 | mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)(GO:0005749) succinate dehydrogenase complex (ubiquinone)(GO:0045257) respiratory chain complex II(GO:0045273) succinate dehydrogenase complex(GO:0045281) fumarate reductase complex(GO:0045283) |
0.0 | 0.2 | GO:0070390 | transcription export complex 2(GO:0070390) |
0.0 | 0.2 | GO:0070062 | extracellular exosome(GO:0070062) |
0.0 | 0.2 | GO:0005669 | transcription factor TFIID complex(GO:0005669) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.6 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.0 | 2.2 | GO:0008083 | growth factor activity(GO:0008083) |
0.5 | 1.8 | GO:0008310 | single-stranded DNA 3'-5' exodeoxyribonuclease activity(GO:0008310) |
0.0 | 1.7 | GO:0048020 | CCR chemokine receptor binding(GO:0048020) |
0.1 | 1.6 | GO:0004693 | cyclin-dependent protein serine/threonine kinase activity(GO:0004693) cyclin-dependent protein kinase activity(GO:0097472) |
0.0 | 1.6 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.0 | 1.3 | GO:0051427 | hormone receptor binding(GO:0051427) |
0.0 | 1.2 | GO:0016209 | antioxidant activity(GO:0016209) |
0.2 | 0.9 | GO:0030116 | glial cell-derived neurotrophic factor receptor binding(GO:0030116) |
0.2 | 0.9 | GO:0052656 | branched-chain-amino-acid transaminase activity(GO:0004084) L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.6 | PID ALK2 PATHWAY | ALK2 signaling events |
0.1 | 1.5 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
0.0 | 1.0 | PID ATM PATHWAY | ATM pathway |
0.0 | 0.9 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.0 | 0.8 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.1 | 0.7 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
0.0 | 0.6 | PID LPA4 PATHWAY | LPA4-mediated signaling events |
0.0 | 0.5 | PID SYNDECAN 3 PATHWAY | Syndecan-3-mediated signaling events |
0.0 | 0.4 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 0.2 | ST STAT3 PATHWAY | STAT3 Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.7 | REACTOME ACTIVATION OF RAC | Genes involved in Activation of Rac |
0.0 | 1.6 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.0 | 0.9 | REACTOME CELL JUNCTION ORGANIZATION | Genes involved in Cell junction organization |
0.1 | 0.8 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.0 | 0.8 | REACTOME BRANCHED CHAIN AMINO ACID CATABOLISM | Genes involved in Branched-chain amino acid catabolism |
0.0 | 0.8 | REACTOME ION TRANSPORT BY P TYPE ATPASES | Genes involved in Ion transport by P-type ATPases |
0.1 | 0.6 | REACTOME ADENYLATE CYCLASE ACTIVATING PATHWAY | Genes involved in Adenylate cyclase activating pathway |
0.1 | 0.5 | REACTOME TETRAHYDROBIOPTERIN BH4 SYNTHESIS RECYCLING SALVAGE AND REGULATION | Genes involved in Tetrahydrobiopterin (BH4) synthesis, recycling, salvage and regulation |
0.0 | 0.5 | REACTOME CS DS DEGRADATION | Genes involved in CS/DS degradation |
0.0 | 0.5 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |