ISMARA results: tefa+tefb

Project

PRJNA438478: RNAseq of wild type zebrafish germline

Navigation

Downloads

Results for tefa+tefb

Z-value: 0.93

Motif logo

Transcription factors associated with tefa+tefb

Gene Symbol	Gene ID	Gene Info
tefa NCBI UniProt	ENSDARG00000039117	TEF transcription factor, PAR bZIP family member a
tefb NCBI UniProt	ENSDARG00000098103	TEF transcription factor, PAR bZIP family member b
tefa NCBI UniProt	ENSDARG00000109532	TEF transcription factor, PAR bZIP family member a

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
tefb	dr11_v1_chr3_-_5067585_5067585	0.99	3.2e-14	Click!
tefa	dr11_v1_chr12_-_19153177_19153177	0.64	4.1e-03	Click!

Activity profile of tefa+tefb motif

Sorted Z-values of tefa+tefb motif

Top targets:

Search:

Show entries

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr5_+_22974019 Show fit	4.74	ENSDART00000147157 ENSDART00000020434	brwd3 NCBI UniProt Show fit	bromodomain and WD repeat domain containing 3
chr3_+_7763114 Show fit	1.73	ENSDART00000057434	hook2 NCBI UniProt Show fit	hook microtubule-tethering protein 2
chr5_-_69212184 Show fit	1.67	ENSDART00000053963	mat2ab NCBI UniProt Show fit	methionine adenosyltransferase II, alpha b
chr14_+_21699129 Show fit	1.61	ENSDART00000073707	stx3a NCBI UniProt Show fit	syntaxin 3A
chr7_+_38380135 Show fit	1.48	ENSDART00000174005	rhpn2 NCBI UniProt Show fit	rhophilin, Rho GTPase binding protein 2
chr18_-_39288894 Show fit	1.44	ENSDART00000186216	mapk6 NCBI UniProt Show fit	mitogen-activated protein kinase 6
chr22_+_10606863 Show fit	1.38	ENSDART00000147975	rad54l2 NCBI UniProt Show fit	RAD54 like 2
chr3_-_26184018 Show fit	1.35	ENSDART00000191604	si:ch211-11k18.4 NCBI UniProt Show fit	si:ch211-11k18.4
chr5_-_69716501 Show fit	1.33	ENSDART00000158956	mob1a NCBI UniProt Show fit	MOB kinase activator 1A
chr15_+_24737599 Show fit	1.31	ENSDART00000078024	crk NCBI UniProt Show fit	v-crk avian sarcoma virus CT10 oncogene homolog

Showing 1 to 10 of 90 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of tefa+tefb

View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	4.7	GO:0008360	regulation of cell shape(GO:0008360)
0.6	2.9	GO:0098881	exocytic insertion of neurotransmitter receptor to plasma membrane(GO:0098881) exocytic insertion of neurotransmitter receptor to postsynaptic membrane(GO:0098967)
0.0	2.3	GO:0016197	endosomal transport(GO:0016197)
0.2	1.7	GO:0006556	S-adenosylmethionine biosynthetic process(GO:0006556)
0.0	1.7	GO:0031122	cytoplasmic microtubule organization(GO:0031122)
0.1	1.3	GO:0007520	myoblast fusion(GO:0007520)
0.2	1.1	GO:2001106	regulation of guanyl-nucleotide exchange factor activity(GO:1905097) regulation of Rho guanyl-nucleotide exchange factor activity(GO:2001106)
0.0	1.1	GO:0032456	endocytic recycling(GO:0032456)
0.2	1.0	GO:0044210	'de novo' CTP biosynthetic process(GO:0044210)
0.1	1.0	GO:1904356	regulation of telomere maintenance via telomere lengthening(GO:1904356)

Showing 1 to 10 of 32 entries

Gene overrepresentation in cellular component category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	2.9	GO:0048787	presynaptic active zone membrane(GO:0048787)
0.4	1.7	GO:0048269	methionine adenosyltransferase complex(GO:0048269)
0.0	1.3	GO:0005741	mitochondrial outer membrane(GO:0005741)
0.1	1.1	GO:0032783	ELL-EAF complex(GO:0032783)
0.0	1.1	GO:0060170	ciliary membrane(GO:0060170)
0.2	1.0	GO:0097268	cytoophidium(GO:0097268)
0.1	1.0	GO:0070187	telosome(GO:0070187)
0.0	0.9	GO:0043209	myelin sheath(GO:0043209)
0.0	0.8	GO:0005881	cytoplasmic microtubule(GO:0005881)
0.1	0.6	GO:0005779	integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231)

Showing 1 to 10 of 10 entries

Gene overrepresentation in molecular function category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	2.9	GO:0005484	SNAP receptor activity(GO:0005484)
0.4	1.7	GO:0004478	methionine adenosyltransferase activity(GO:0004478)
0.0	1.4	GO:0004707	MAP kinase activity(GO:0004707)
0.0	1.2	GO:0016307	phosphatidylinositol phosphate kinase activity(GO:0016307)
0.0	1.2	GO:0051959	dynein light intermediate chain binding(GO:0051959)
0.0	1.1	GO:0030170	pyridoxal phosphate binding(GO:0030170)
0.2	1.0	GO:0003883	CTP synthase activity(GO:0003883)
0.0	1.0	GO:0015248	sterol transporter activity(GO:0015248)
0.0	1.0	GO:0042162	telomeric DNA binding(GO:0042162)
0.1	0.9	GO:0005522	profilin binding(GO:0005522)

Showing 1 to 10 of 26 entries

Gene overrepresentation in curated gene sets: canonical pathways category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	1.3	PID TCR JNK PATHWAY	JNK signaling in the CD4+ TCR pathway
0.0	0.9	PID ECADHERIN STABILIZATION PATHWAY	Stabilization and expansion of the E-cadherin adherens junction
0.1	0.5	SA PROGRAMMED CELL DEATH	Programmed cell death, or apoptosis, eliminates damaged or unneeded cells.

Showing 1 to 3 of 3 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	1.3	REACTOME ARMS MEDIATED ACTIVATION	Genes involved in ARMS-mediated activation
0.1	1.3	REACTOME SIGNALING BY HIPPO	Genes involved in Signaling by Hippo
0.2	0.9	REACTOME REGULATION OF COMPLEMENT CASCADE	Genes involved in Regulation of Complement cascade
0.1	0.9	REACTOME GENERATION OF SECOND MESSENGER MOLECULES	Genes involved in Generation of second messenger molecules
0.1	0.9	REACTOME GLUTATHIONE CONJUGATION	Genes involved in Glutathione conjugation
0.0	0.7	REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT	Genes involved in ABC-family proteins mediated transport
0.1	0.5	REACTOME INFLAMMASOMES	Genes involved in Inflammasomes
0.0	0.5	REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE	Genes involved in Reversible Hydration of Carbon Dioxide

Showing 1 to 8 of 8 entries

Results for tefa+tefb

Z-value: 0.93

Motif logo

Transcription factors associated with tefa+tefb

Activity-expression correlation:

Activity profile of tefa+tefb motif

Sorted Z-values of tefa+tefb motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of tefa+tefb

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: canonical pathways category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: