PRJNA438478: RNAseq of wild type zebrafish germline

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
sox1b Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000008131	SRY-box transcription factor 1b
sox1a Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000069866	SRY-box transcription factor 1a
sox1a Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000110682	SRY-box transcription factor 1a
sox1a Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000114571	SRY-box transcription factor 1a

Gene	Promoter	Pearson corr. coef.	P-value	Plot
sox1a	dr11_v1_chr9_+_21722733_21722733	-0.66	2.7e-03	Click!
sox1b	dr11_v1_chr1_+_46194333_46194333	-0.53	2.3e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr25_+_18475032 Show fit	0.27	ENSDART00000073564	tes Links NCBI UniProt ZFIN ENSEMBL Google Show fit	testis derived transcript (3 LIM domains)
chr14_+_15768942 Show fit	0.24	ENSDART00000158998	ergic1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	endoplasmic reticulum-golgi intermediate compartment 1
chr19_+_15440841 Show fit	0.21	ENSDART00000182329	lin28a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lin-28 homolog A (C. elegans)
chr8_+_42917515 Show fit	0.20	ENSDART00000021715	slc23a2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 23 (ascorbic acid transporter), member 2
chr25_+_418932 Show fit	0.20	ENSDART00000059193	prtgb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protogenin homolog b (Gallus gallus)
chr5_+_51833305 Show fit	0.19	ENSDART00000165276 ENSDART00000166443	papd4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PAP associated domain containing 4
chr16_-_44878245 Show fit	0.17	ENSDART00000154391 ENSDART00000154925 ENSDART00000154697	arhgap33 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Rho GTPase activating protein 33
chr23_-_24247672 Show fit	0.17	ENSDART00000141552	zbtb17 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger and BTB domain containing 17
chr19_+_14109348 Show fit	0.16	ENSDART00000159015	zgc:175136 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:175136
chr7_+_31425976 Show fit	0.16	ENSDART00000075400	eif3jb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	eukaryotic translation initiation factor 3, subunit Jb
chr2_+_31308587 Show fit	0.16	ENSDART00000027090	clul1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	clusterin-like 1 (retinal)
chr2_+_36620011 Show fit	0.15	ENSDART00000177428	pak2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	p21 protein (Cdc42/Rac)-activated kinase 2a
chr5_+_51833132 Show fit	0.15	ENSDART00000167491	papd4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PAP associated domain containing 4
chr22_+_35131890 Show fit	0.13	ENSDART00000003303 ENSDART00000130581	rnf13 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ring finger protein 13
chr16_-_21047483 Show fit	0.13	ENSDART00000136235	cbx3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chromobox homolog 3b
chr5_+_30520249 Show fit	0.13	ENSDART00000013431	hmbsa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	hydroxymethylbilane synthase a
chr2_+_1881334 Show fit	0.13	ENSDART00000161420	adgrl2b.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adhesion G protein-coupled receptor L2b, tandem duplicate 1
chr13_+_15581270 Show fit	0.13	ENSDART00000189880 ENSDART00000190067 ENSDART00000041293	mark3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	MAP/microtubule affinity-regulating kinase 3a
chr18_-_45761868 Show fit	0.12	ENSDART00000025423	cstf3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cleavage stimulation factor, 3' pre-RNA, subunit 3
chr1_+_50639416 Show fit	0.12	ENSDART00000141977	herc3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	HECT and RLD domain containing E3 ubiquitin protein ligase 3
chr15_+_24005289 Show fit	0.11	ENSDART00000088648	myo18ab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myosin XVIIIAb
chr20_+_27093042 Show fit	0.11	ENSDART00000024595	ubr7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ubiquitin protein ligase E3 component n-recognin 7
chr2_-_31833347 Show fit	0.11	ENSDART00000109460	nol7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nucleolar protein 7
chr11_+_16216909 Show fit	0.11	ENSDART00000081035 ENSDART00000147190	slc25a26 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 25 (S-adenosylmethionine carrier), member 26
chr7_-_18877109 Show fit	0.10	ENSDART00000113593	mllt3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	MLLT3, super elongation complex subunit
chr2_-_54039293 Show fit	0.10	ENSDART00000166013	abhd8a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	abhydrolase domain containing 8a
chr17_-_19463355 Show fit	0.10	ENSDART00000045881	dicer1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	dicer 1, ribonuclease type III
chr8_+_49096486 Show fit	0.10	ENSDART00000192998	zgc:56525 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:56525
chr11_+_31324335 Show fit	0.09	ENSDART00000088093	sipa1l2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	signal-induced proliferation-associated 1 like 2
chr23_-_12158685 Show fit	0.09	ENSDART00000135035	fam217b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	family with sequence similarity 217, member B
chr16_-_21047872 Show fit	0.08	ENSDART00000131582	cbx3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chromobox homolog 3b
chr9_+_25853052 Show fit	0.08	ENSDART00000127135	gtdc1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glycosyltransferase-like domain containing 1
chr16_-_30826712 Show fit	0.08	ENSDART00000122474	ptk2ab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein tyrosine kinase 2ab
chr6_-_37513133 Show fit	0.08	ENSDART00000147826	jade3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	jade family PHD finger 3
chr24_-_9291857 Show fit	0.07	ENSDART00000149875	tgif1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	TGFB-induced factor homeobox 1
chr7_+_50796422 Show fit	0.07	ENSDART00000123868	dthd1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	death domain containing 1
chr1_+_59328030 Show fit	0.05	ENSDART00000172464	CABZ01052576.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr21_-_19916021 Show fit	0.05	ENSDART00000065671	eri1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	exoribonuclease 1
chr21_-_19915757 Show fit	0.05	ENSDART00000164317	eri1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	exoribonuclease 1
chr3_+_9588705 Show fit	0.05	ENSDART00000172543 ENSDART00000104875	trap1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	TNF receptor-associated protein 1
chr12_+_26512569 Show fit	0.04	ENSDART00000066264	chad Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chondroadherin
chr7_+_28960518 Show fit	0.04	ENSDART00000182903 ENSDART00000188250 ENSDART00000191830	dok4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	docking protein 4
chr25_-_19661198 Show fit	0.04	ENSDART00000149641	atp2b1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATPase plasma membrane Ca2+ transporting 1b
chr18_+_33464345 Show fit	0.02	ENSDART00000059447	v2rh9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	vomeronasal 2 receptor, h9
chr4_-_9664995 Show fit	0.02	ENSDART00000180105 ENSDART00000029084	dmtf1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cyclin D binding myb-like transcription factor 1
chr22_+_9994833 Show fit	0.02	ENSDART00000172696 ENSDART00000192101	BX324216.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr4_-_9665267 Show fit	0.02	ENSDART00000150318	dmtf1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cyclin D binding myb-like transcription factor 1
chr22_-_8931093 Show fit	0.01	ENSDART00000181813	FO393424.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr14_+_6429399 Show fit	0.01	ENSDART00000149783 ENSDART00000148461	abca1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATP-binding cassette, sub-family A (ABC1), member 1B
chr9_-_6624663 Show fit	0.01	ENSDART00000092537	GPR45 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkeyp-118h3.5
chr2_+_48687528 Show fit	0.01	ENSDART00000158312	si:dkey-53k12.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-53k12.1
chr19_+_20177887 Show fit	0.01	ENSDART00000008595	tra2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transformer 2 alpha homolog
chr3_+_4213864 Show fit	0.01	ENSDART00000059613	si:dkeyp-52c3.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkeyp-52c3.5
chr10_-_36236610 Show fit	0.01	ENSDART00000159381	or109-3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	odorant receptor, family D, subfamily 109, member 3
chr14_-_17072736 Show fit	0.00	ENSDART00000106333	phox2bb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	paired-like homeobox 2bb
chr10_+_25726694 Show fit	0.00	ENSDART00000140308	ugt5d1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	UDP glucuronosyltransferase 5 family, polypeptide D1
chr7_+_57677120 Show fit	0.00	ENSDART00000110623	arsj Links NCBI UniProt ZFIN ENSEMBL Google Show fit	arylsulfatase family, member J
chr7_-_47148440 Show fit	0.00	ENSDART00000185435 ENSDART00000189719	BX005073.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr2_-_28420415 Show fit	0.00	ENSDART00000183857	CABZ01056051.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr1_+_25732715 Show fit	0.00	ENSDART00000140172	npy2r Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neuropeptide Y receptor Y2
chr15_-_2493771 Show fit	0.00	ENSDART00000184906	neu4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sialidase 4

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0015882	L-ascorbic acid transport(GO:0015882) L-ascorbic acid metabolic process(GO:0019852)
0.0	0.1	GO:0030423	targeting of mRNA for destruction involved in RNA interference(GO:0030423)
0.0	0.1	GO:0018160	peptidyl-pyrromethane cofactor linkage(GO:0018160)
0.0	0.1	GO:0000738	DNA catabolic process, exonucleolytic(GO:0000738)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0070578	RISC-loading complex(GO:0070578)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0032296	ribonuclease III activity(GO:0004525) double-stranded RNA-specific ribonuclease activity(GO:0032296) pre-miRNA binding(GO:0070883)
0.0	0.1	GO:0004418	hydroxymethylbilane synthase activity(GO:0004418)
0.0	0.1	GO:0051185	coenzyme transporter activity(GO:0051185)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	REACTOME MICRORNA MIRNA BIOGENESIS	Genes involved in MicroRNA (miRNA) Biogenesis