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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for smarcc1a+smarcc1b

Z-value: 0.42

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Transcription factors associated with smarcc1a+smarcc1b

Gene Symbol Gene ID Gene Info
ENSDARG00000017397 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1a
ENSDARG00000098919 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
smarcc1adr11_v1_chr16_-_42461263_424612630.551.7e-02Click!
smarcc1bdr11_v1_chr19_-_19379084_193790840.391.1e-01Click!

Activity profile of smarcc1a+smarcc1b motif

oocyte1_rep1oocyte1_rep2oocyte2_rep1oocyte2_rep2oocyte3_rep1oocyte3_rep2ovary1_rep1ovary1_rep2ovary2_rep1ovary2_rep2ovary3_rep1ovary3_rep2testis1_rep1testis1_rep2testis2_rep1testis2_rep2testis3_rep1testis3_rep2−0.04−0.03−0.02−0.0100.010.020.030.04
activity (log2(tpm) per TFBS)

Sorted Z-values of smarcc1a+smarcc1b motif

−0.8−0.6−0.4−0.200.20.40.6ovary1_rep1ovary3_rep1ovary2_rep1oocyte1_rep2testis3_rep2ovary1_rep2oocyte2_rep2oocyte3_rep2testis3_rep1testis1_rep1testis2_rep2ovary3_rep2testis2_rep1ovary2_rep2testis1_rep2oocyte1_rep1oocyte3_rep1oocyte2_rep1
Z-value

Network of associatons between targets according to the STRING database.

First level regulatory network of smarcc1a+smarcc1b

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: canonical pathways category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: