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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for ptf1a+si:dkey-34f9.3

Z-value: 0.36

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Transcription factors associated with ptf1a+si:dkey-34f9.3

Gene Symbol Gene ID Gene Info
ENSDARG00000014479 pancreas associated transcription factor 1a
ENSDARG00000077813 si_dkey-34f9.3

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
si:dkey-34f9.3dr11_v1_chr9_+_45789887_457898870.625.9e-03Click!
ptf1adr11_v1_chr2_+_29710857_297108570.331.9e-01Click!

Activity profile of ptf1a+si:dkey-34f9.3 motif

Sorted Z-values of ptf1a+si:dkey-34f9.3 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr23_-_28692581 1.17 ENSDART00000078141
RIB43A domain with coiled-coils 1
chr10_+_506538 1.09 ENSDART00000141713
si:ch211-242f23.3
chr21_+_244503 1.00 ENSDART00000162889
StAR-related lipid transfer (START) domain containing 4
chr12_+_18663154 0.80 ENSDART00000057918
si:ch211-147h1.4
chr7_-_38644560 0.79 ENSDART00000114934
six-cysteine containing astacin protease 3
chr25_-_15496485 0.67 ENSDART00000140245
si:dkeyp-67e1.6
chr14_+_48964628 0.64 ENSDART00000105427
macrophage migration inhibitory factor
chr10_+_45059702 0.64 ENSDART00000166945
NudC domain containing 3
chr1_+_57311901 0.62 ENSDART00000149397
mycbp associated protein
chr5_+_62723233 0.61 ENSDART00000183718
nanos homolog 2
chr7_-_38644287 0.59 ENSDART00000182307
six-cysteine containing astacin protease 3
chr16_+_9762261 0.57 ENSDART00000020654
proteasome 26S subunit, non-ATPase 4b
chr8_-_36554675 0.56 ENSDART00000132804
ENSDART00000078746
coiled-coil domain containing 157
chr1_-_59287410 0.56 ENSDART00000158011
ENSDART00000170580
collagen, type V, alpha 3b
chr18_+_5490668 0.53 ENSDART00000167035
muscle-specific beta 1 integrin binding protein 2
chr12_-_37343858 0.51 ENSDART00000153281
tektin 3
chr3_-_61592417 0.50 ENSDART00000155082
neuronal pentraxin 2a
chr1_-_59407322 0.47 ENSDART00000161661
si:ch211-188p14.5
chr5_-_30704390 0.46 ENSDART00000016709
intraflagellar transport 22 homolog (Chlamydomonas)
chr25_+_36336920 0.42 ENSDART00000073402
histone cluster 1 H2A family member1
chr3_-_34624745 0.42 ENSDART00000151091
tachykinin 4 (hemokinin)
chr1_-_40123943 0.41 ENSDART00000146917
si:ch211-113e8.10
chr3_+_62196672 0.39 ENSDART00000097312
SCO1 cytochrome c oxidase assembly protein
chr15_-_35134918 0.37 ENSDART00000157196
si:ch211-272b8.7
chr22_-_26251563 0.37 ENSDART00000060888
ENSDART00000142821
coiled-coil domain containing 130
chr25_-_1426876 0.35 ENSDART00000153537
integrin, alpha 11b
chr5_+_57743815 0.34 ENSDART00000005090
ALG9, alpha-1,2-mannosyltransferase
chr15_-_46828958 0.34 ENSDART00000045110
chordin
chr24_+_39576071 0.33 ENSDART00000147137
si:dkey-161j23.6
chr7_+_44608224 0.33 ENSDART00000005033
CKLF-like MARVEL transmembrane domain containing 3
chr24_-_33756003 0.32 ENSDART00000079283
transmembrane protein with EGF-like and two follistatin-like domains 1b
chr25_-_34670413 0.31 ENSDART00000073440
DnaJ heat shock protein family (Hsp40) member A4
chr11_-_22372072 0.30 ENSDART00000065996
transmembrane protein 183A
chr7_+_49664174 0.29 ENSDART00000137059
ENSDART00000131210
Ras association (RalGDS/AF-6) domain family (N-terminal) member 7b
chr3_+_41917499 0.29 ENSDART00000028673
LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
chr16_-_30932533 0.28 ENSDART00000085761
solute carrier family 45, member 4
chr5_+_37854685 0.26 ENSDART00000051222
ENSDART00000185283
preproinsulin
chr7_-_38638809 0.25 ENSDART00000144341
six-cysteine containing astacin protease 4
chr18_-_18543358 0.25 ENSDART00000126460
interleukin 34
chr18_-_16801033 0.24 ENSDART00000100100
adrenomedullin b
chr17_-_30473374 0.23 ENSDART00000155021
si:ch211-175f11.5
chr2_+_42236118 0.23 ENSDART00000114162
ENSDART00000141199
finTRIM family, member 2
chr20_+_7084154 0.23 ENSDART00000136448
finTRIM family, member 85
chr10_+_2899108 0.23 ENSDART00000147031
endoplasmic reticulum aminopeptidase 1a
chr19_-_9662958 0.21 ENSDART00000041094
chloride channel, voltage-sensitive 1a
chr16_-_46567344 0.21 ENSDART00000127721
si:dkey-152b24.7
chr11_-_2478374 0.21 ENSDART00000173205
si:ch73-267c23.10
chr9_+_28693592 0.20 ENSDART00000110198
zgc:162780
chr3_+_37649436 0.19 ENSDART00000075039
golgi SNAP receptor complex member 2
chr18_+_5875268 0.18 ENSDART00000177784
ENSDART00000122009
WD repeat domain 59
chr17_-_11015878 0.17 ENSDART00000162249
dishevelled-binding antagonist of beta-catenin 1
chr2_+_47927026 0.17 ENSDART00000143023
finTRIM family, member 25
chr12_-_7854216 0.17 ENSDART00000149594
ankyrin 3b
chr7_+_44608478 0.17 ENSDART00000149981
CKLF-like MARVEL transmembrane domain containing 3
chr4_-_76488854 0.16 ENSDART00000132323
finTRIM family, member 51
chr12_+_7865470 0.16 ENSDART00000161683

chr25_+_31227747 0.15 ENSDART00000033872
troponin I type 2a (skeletal, fast), tandem duplicate 1
chr10_-_45029041 0.15 ENSDART00000167878
polymerase (DNA directed), mu
chr9_+_343062 0.15 ENSDART00000164012
ENSDART00000164365
BPI fold containing family C, like
chr1_-_65017 0.15 ENSDART00000168609
si:zfos-1011f11.2
chr3_-_32934359 0.15 ENSDART00000124160
amine oxidase, copper containing 2
chr17_-_14451405 0.14 ENSDART00000146786
jnk1/mapk8 associated membrane protein
chr4_-_7231480 0.14 ENSDART00000159436
si:ch211-170p16.1
chr1_-_58009216 0.14 ENSDART00000143829
nucleoredoxin like 1
chr1_+_26467071 0.14 ENSDART00000112329
ENSDART00000159318
ENSDART00000193833
ENSDART00000011809
USO1 vesicle transport factor
chr24_+_34085940 0.13 ENSDART00000171189
ankyrin repeat and SOCS box containing 10
chr3_-_4579214 0.13 ENSDART00000164456
finTRIM family, member 50
chr2_-_1514001 0.12 ENSDART00000057736
complement component 8, beta polypeptide
chr12_-_3940768 0.12 ENSDART00000134292
zgc:92040
chr15_-_35098345 0.12 ENSDART00000181824

chr7_+_5904020 0.12 ENSDART00000172847
histone cluster 1 H2A family member 11
chr21_-_20733615 0.11 ENSDART00000145544
si:ch211-22d5.2
chr3_+_3545825 0.11 ENSDART00000109060

chr18_-_41754020 0.10 ENSDART00000077898
G protein-coupled receptor kinase 7b
chr6_-_29105727 0.10 ENSDART00000184355
family with sequence similarity 69, member Ab
chr4_-_33371634 0.10 ENSDART00000150712
si:dkeyp-4f2.3
chr13_-_226393 0.10 ENSDART00000172677
reticulon 4b
chr16_-_46572834 0.10 ENSDART00000115248
zgc:174938
chr15_-_42736433 0.10 ENSDART00000154379
si:ch211-181d7.1
chr8_-_22274222 0.09 ENSDART00000131805
nephronophthisis 4
chr21_-_32680638 0.09 ENSDART00000147203
ADAM metallopeptidase with thrombospondin type 1 motif, 2
chr9_+_3153717 0.09 ENSDART00000191958
si:zfos-979f1.2
chr3_+_15907458 0.09 ENSDART00000163525
mitogen-activated protein kinase 8 interacting protein 3
chr2_-_48153945 0.09 ENSDART00000146553
phosphofructokinase, platelet b
chr3_-_58585854 0.09 ENSDART00000123546

chr23_+_5736226 0.09 ENSDART00000134527
ENSDART00000112220
finTRIM family, member 57
chr3_+_17456428 0.09 ENSDART00000090676
ENSDART00000182082
si:ch211-210g13.5
chr13_+_9100 0.09 ENSDART00000165772
protein phosphatase 4, regulatory subunit 3B
chr23_+_9353552 0.09 ENSDART00000163298

chr21_+_45819662 0.09 ENSDART00000193362
ENSDART00000184255
paired-like homeodomain 1
chr3_-_36115339 0.08 ENSDART00000187406
ENSDART00000123505
ENSDART00000151775
RAB11 family interacting protein 4 (class II) a
chr22_-_17489040 0.08 ENSDART00000141286
si:ch211-197g15.6
chr2_-_14793343 0.08 ENSDART00000132264
si:ch73-366i20.1
chr13_-_226109 0.08 ENSDART00000161705
ENSDART00000172744
ENSDART00000163902
ENSDART00000158208
reticulon 4b
chr7_-_64152087 0.08 ENSDART00000165234

chr20_+_38725662 0.08 ENSDART00000181873
urotensin 1
chr2_-_59327299 0.08 ENSDART00000133734
finTRIM family, member 36
chr18_-_502722 0.08 ENSDART00000185757
short chain dehydrogenase/reductase family 42E, member 1
chr3_-_17871846 0.08 ENSDART00000074478
ENSDART00000187941
NFKB inhibitor interacting Ras-like 2
chr2_-_59205393 0.07 ENSDART00000056417
ENSDART00000182452
ENSDART00000141876
finTRIM family, member 30
chr21_-_25601648 0.07 ENSDART00000042578
EGF containing fibulin extracellular matrix protein 2b
chr19_-_617246 0.07 ENSDART00000062551
cytochrome P450, family 51
chr3_+_18097700 0.07 ENSDART00000021634
info WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2a
chr2_-_47904043 0.07 ENSDART00000185328
ENSDART00000126740
finTRIM family, member 22
chr9_+_3153466 0.07 ENSDART00000135619
si:zfos-979f1.2
chr12_-_6172154 0.07 ENSDART00000185434
apobec1 complementation factor
chr18_-_1414760 0.06 ENSDART00000171881
peptidase D
chr2_-_59178742 0.06 ENSDART00000170594
ENSDART00000109246
finTRIM family, member 95
chr2_-_43130812 0.06 ENSDART00000039079
ENSDART00000056162
finTRIM family, member 13
chr3_+_5504990 0.06 ENSDART00000143626
si:ch73-264i18.2
chr3_-_54524194 0.06 ENSDART00000155406
ENSDART00000111791
si:ch73-208g10.1
chr16_-_46573211 0.06 ENSDART00000193392
zgc:174938
chr23_-_6865946 0.06 ENSDART00000056426
finTRIM family, member 58
chr9_-_17417628 0.06 ENSDART00000060425
ENSDART00000141997
finTRIM family, member 53
chr3_-_4557653 0.06 ENSDART00000111305
finTRIM family, member 50
chr2_+_47935476 0.05 ENSDART00000140555
finTRIM family, member 26
chr6_+_54358529 0.05 ENSDART00000153704
ankyrin repeat and sterile alpha motif domain containing 1Ab
chr2_-_59231017 0.05 ENSDART00000143980
ENSDART00000184190
finTRIM family, member 29
chr7_-_41812355 0.05 ENSDART00000016105
vacuolar protein sorting 35 homolog (S. cerevisiae)
chr16_-_11961325 0.05 ENSDART00000143845
si:ch73-296e2.3
chr2_-_40199780 0.05 ENSDART00000113901
chemokine (C-C motif) ligand 34a, duplicate 4
chr1_+_54835131 0.05 ENSDART00000145070
si:ch211-196h16.4
chr3_+_57788761 0.05 ENSDART00000149741
si:ch73-362i18.1
chr23_-_10914275 0.05 ENSDART00000112965
PDZ domain containing RING finger 3a
chr4_+_72797711 0.04 ENSDART00000190934
ENSDART00000163236
myelin regulatory factor-like
chr4_+_40018440 0.04 ENSDART00000110827
si:dkey-199k11.6
chr2_-_59265521 0.04 ENSDART00000146341
ENSDART00000097799
finTRIM family, member 33
chr21_-_19906388 0.03 ENSDART00000114969
malignant fibrous histiocytoma amplified sequence 1
chr14_+_597532 0.03 ENSDART00000159805

chr25_+_37285737 0.03 ENSDART00000126879
transmembrane p24 trafficking protein 6
chr3_-_4591643 0.03 ENSDART00000138144
finTRIM family, member 50
chr15_-_44275069 0.03 ENSDART00000124980

chr4_+_69801372 0.03 ENSDART00000154125
si:dkey-238o14.7
chr14_-_2193248 0.03 ENSDART00000128659
protocadherin 2 alpha b 10
chr4_+_37406676 0.03 ENSDART00000130981
si:ch73-134f24.1
chr11_+_45347961 0.03 ENSDART00000172962
si:ch73-100l22.3
chr3_-_48993580 0.02 ENSDART00000182400

chr15_-_26636826 0.02 ENSDART00000087632
solute carrier family 47 (multidrug and toxin extrusion), member 4
chr7_-_1918971 0.02 ENSDART00000181759

chr4_-_41772315 0.02 ENSDART00000193109
zinc finger protein 976
chr7_+_71547747 0.02 ENSDART00000180869
adenylate cyclase activating polypeptide 1a
chr4_-_65323874 0.02 ENSDART00000175271
ENSDART00000187913

chr2_-_59345920 0.02 ENSDART00000134662
finTRIM family, member 37
chr7_-_27798509 0.02 ENSDART00000173932
si:ch211-79e4.4
chr24_+_6353394 0.02 ENSDART00000165118

chr22_+_5123479 0.02 ENSDART00000111822
ENSDART00000081910
lysyl oxidase-like 5a
chr23_+_4890693 0.01 ENSDART00000023537
troponin C type 1a (slow)
chr14_+_14314892 0.01 ENSDART00000168320
neuroligin 3a
chr14_-_30390145 0.01 ENSDART00000045423
solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
chr2_+_42294944 0.01 ENSDART00000140599
ENSDART00000178811
finTRIM family, member 6
chr12_+_47122104 0.01 ENSDART00000184248

chr16_+_43219363 0.01 ENSDART00000183610
ADAM metallopeptidase domain 22
chr4_-_58964138 0.01 ENSDART00000150259
si:ch211-64i20.3
chr8_+_4333914 0.01 ENSDART00000137528
myosin, light chain 2b, regulatory, cardiac, slow
chr5_+_28849155 0.01 ENSDART00000079090
zgc:174259
chr13_-_638485 0.01 ENSDART00000066080
ENSDART00000128969
slit homolog 1a (Drosophila)
chr14_+_14315078 0.01 ENSDART00000182488
neuroligin 3a
chr19_+_7895086 0.01 ENSDART00000132180
si:dkey-266f7.1
chr13_+_33452096 0.01 ENSDART00000057370
finTRIM family, member 80
chr3_-_48980319 0.01 ENSDART00000165319
finTRIM family, member 42
chr15_-_41523225 0.01 ENSDART00000141202
ENSDART00000099290
ENSDART00000170395
ENSDART00000099437
si:dkey-230i18.2
si:dkey-121n8.7
NLR family CARD domain containing 9
chr5_+_28857969 0.01 ENSDART00000149850
si:ch211-186e20.2
chr4_-_71983381 0.01 ENSDART00000169130
finTRIM family, member 64
chr4_+_38981587 0.01 ENSDART00000142713
si:dkey-66k12.3
chr2_-_59376399 0.01 ENSDART00000137134
finTRIM family, member 38
chr5_+_28848870 0.00 ENSDART00000149563
zgc:174259
chr17_-_86548 0.00 ENSDART00000163657
gremlin 1b
chr18_+_3140682 0.00 ENSDART00000166382
chloride channel, nucleotide-sensitive, 1A
chr3_+_61522759 0.00 ENSDART00000106266
zinc finger protein 1004
chr15_-_5222597 0.00 ENSDART00000123819
odorant receptor, family E, subfamily 128, member 4

Network of associatons between targets according to the STRING database.

First level regulatory network of ptf1a+si:dkey-34f9.3

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.0 GO:0070508 sterol import(GO:0035376) cholesterol import(GO:0070508)
0.1 0.4 GO:0007217 tachykinin receptor signaling pathway(GO:0007217)
0.1 0.3 GO:0045649 regulation of macrophage differentiation(GO:0045649)
0.1 0.3 GO:0010159 specification of organ position(GO:0010159)
0.1 0.5 GO:0051673 membrane disruption in other organism(GO:0051673)
0.1 0.3 GO:2000252 positive regulation of epithelial cell differentiation(GO:0030858) negative regulation of behavior(GO:0048521) negative regulation of feeding behavior(GO:2000252)
0.0 0.3 GO:0055016 hypochord development(GO:0055016)
0.0 0.2 GO:0021557 oculomotor nerve development(GO:0021557)
0.0 0.5 GO:0060294 cilium movement involved in cell motility(GO:0060294)
0.0 0.6 GO:0043248 proteasome assembly(GO:0043248)
0.0 0.3 GO:0048280 vesicle fusion with Golgi apparatus(GO:0048280)
0.0 0.3 GO:2000095 regulation of Wnt signaling pathway, planar cell polarity pathway(GO:2000095)
0.0 0.1 GO:0010133 proline catabolic process to glutamate(GO:0010133)
0.0 0.2 GO:0042989 sequestering of actin monomers(GO:0042989)
0.0 0.4 GO:0097034 mitochondrial respiratory chain complex IV assembly(GO:0033617) mitochondrial respiratory chain complex IV biogenesis(GO:0097034)
0.0 0.2 GO:0019885 antigen processing and presentation of endogenous peptide antigen(GO:0002483) antigen processing and presentation of endogenous antigen(GO:0019883) antigen processing and presentation of endogenous peptide antigen via MHC class I(GO:0019885)
0.0 0.5 GO:0070831 basement membrane assembly(GO:0070831)
0.0 0.6 GO:0060117 auditory receptor cell development(GO:0060117)
0.0 0.2 GO:0006658 phosphatidylserine metabolic process(GO:0006658)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.6 GO:0008540 proteasome regulatory particle, base subcomplex(GO:0008540)
0.0 0.4 GO:0071014 post-mRNA release spliceosomal complex(GO:0071014)
0.0 0.5 GO:0036126 sperm flagellum(GO:0036126)
0.0 0.4 GO:0030992 intraciliary transport particle B(GO:0030992)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0031834 neurokinin receptor binding(GO:0031834) substance P receptor binding(GO:0031835)
0.1 0.5 GO:0050262 ribosylnicotinamide kinase activity(GO:0050262)
0.1 0.3 GO:0033829 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity(GO:0033829)
0.1 0.3 GO:0000026 alpha-1,2-mannosyltransferase activity(GO:0000026)
0.0 0.1 GO:0004657 proline dehydrogenase activity(GO:0004657)
0.0 0.1 GO:0008131 primary amine oxidase activity(GO:0008131)
0.0 0.1 GO:0050254 rhodopsin kinase activity(GO:0050254)
0.0 1.0 GO:0015485 cholesterol binding(GO:0015485)
0.0 0.1 GO:0008432 JUN kinase binding(GO:0008432)
0.0 0.1 GO:0043035 chromatin insulator sequence binding(GO:0043035)
0.0 0.2 GO:0005247 voltage-gated chloride channel activity(GO:0005247)
0.0 0.6 GO:0031593 polyubiquitin binding(GO:0031593)
0.0 0.2 GO:0003785 actin monomer binding(GO:0003785)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 PID ARF 3PATHWAY Arf1 pathway
0.0 0.3 PID INSULIN GLUCOSE PATHWAY Insulin-mediated glucose transport

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.0 REACTOME METABOLISM OF STEROID HORMONES AND VITAMINS A AND D Genes involved in Metabolism of steroid hormones and vitamins A and D
0.0 0.3 REACTOME INSULIN RECEPTOR RECYCLING Genes involved in Insulin receptor recycling
0.0 0.3 REACTOME PRE NOTCH PROCESSING IN GOLGI Genes involved in Pre-NOTCH Processing in Golgi
0.0 0.3 REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein