PRJNA438478: RNAseq of wild type zebrafish germline

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
pou5f3 Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000044774	POU domain, class 5, transcription factor 3

Gene	Promoter	Pearson corr. coef.	P-value	Plot
pou5f3	dr11_v1_chr21_-_13690712_13690712	0.29	2.4e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr10_-_44560165 Show fit	0.73	ENSDART00000181217 ENSDART00000076084	npm2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nucleophosmin/nucleoplasmin, 2b
chr23_-_33709964 Show fit	0.69	ENSDART00000143333 ENSDART00000130338	pou6f1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	POU class 6 homeobox 1
chr24_+_7322116 Show fit	0.53	ENSDART00000005804	XRCC2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	X-ray repair cross complementing 2
chr5_-_30074332 Show fit	0.51	ENSDART00000147963	bco2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	beta-carotene oxygenase 2a
chr1_-_55068941 Show fit	0.49	ENSDART00000152143 ENSDART00000152590	peli1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	pellino E3 ubiquitin protein ligase 1a
chr24_+_3328354 Show fit	0.40	ENSDART00000147468	bdh1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	3-hydroxybutyrate dehydrogenase, type 1
chr8_-_16592491 Show fit	0.37	ENSDART00000101655	calr Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calreticulin
chr18_+_7543347 Show fit	0.32	ENSDART00000103467	arf5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ADP-ribosylation factor 5
chr4_-_8903240 Show fit	0.29	ENSDART00000129983	mpped1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	metallophosphoesterase domain containing 1
chr7_-_24644893 Show fit	0.27	ENSDART00000048921	rgp1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	GP1 homolog, RAB6A GEF complex partner 1
chr7_-_58843193 Show fit	0.27	ENSDART00000167231	mrpl15 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mitochondrial ribosomal protein L15
chr24_-_21989406 Show fit	0.27	ENSDART00000032963	apoob Links NCBI UniProt ZFIN ENSEMBL Google Show fit	apolipoprotein O, b
chr5_+_29715040 Show fit	0.22	ENSDART00000192563	ddx31 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	DEAD (Asp-Glu-Ala-Asp) box polypeptide 31
chr2_-_20120904 Show fit	0.22	ENSDART00000186002 ENSDART00000124724	dpydb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	dihydropyrimidine dehydrogenase b
chr8_+_43016714 Show fit	0.21	ENSDART00000142671	rassf2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Ras association (RalGDS/AF-6) domain family member 2a
chr5_+_29714786 Show fit	0.20	ENSDART00000148314	ddx31 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	DEAD (Asp-Glu-Ala-Asp) box polypeptide 31
chr9_+_12444494 Show fit	0.12	ENSDART00000102430	tmem41aa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane protein 41aa
chr11_+_7528599 Show fit	0.11	ENSDART00000171813	adgrl2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adhesion G protein-coupled receptor L2a
chr17_+_28670132 Show fit	0.09	ENSDART00000076344 ENSDART00000164981 ENSDART00000182851	hectd1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	HECT domain containing 1
chr8_+_41038141 Show fit	0.09	ENSDART00000075620	gpat2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glycerol-3-phosphate acyltransferase 2, mitochondrial
chr22_-_30881738 Show fit	0.08	ENSDART00000059965	si:dkey-49n23.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-49n23.1
chr11_-_36001495 Show fit	0.07	ENSDART00000190330	itpr1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	inositol 1,4,5-trisphosphate receptor, type 1b
chr6_-_55399214 Show fit	0.06	ENSDART00000168367	ctsa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cathepsin A
chr24_-_20641000 Show fit	0.06	ENSDART00000166135	zbtb47b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger and BTB domain containing 47b
chr24_-_7321928 Show fit	0.05	ENSDART00000167570 ENSDART00000045150	actr3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ARP3 actin related protein 3 homolog B
chr19_-_43552252 Show fit	0.05	ENSDART00000138308	gpr186 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	G protein-coupled receptor 186
chr3_-_34032019 Show fit	0.05	ENSDART00000151779	ighv13-2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	immunoglobulin heavy variable 13-2
chr7_+_58843700 Show fit	0.05	ENSDART00000159500 ENSDART00000158436	lypla1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lysophospholipase I
chr25_+_26923193 Show fit	0.04	ENSDART00000187364	grm8b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glutamate receptor, metabotropic 8b
chr22_+_15507218 Show fit	0.04	ENSDART00000125450	gpc1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glypican 1a
chr20_-_34868814 Show fit	0.04	ENSDART00000153049	stmn4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	stathmin-like 4
chr10_+_20628698 Show fit	0.04	ENSDART00000064666	prnpb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	prion protein b
chr8_-_22698651 Show fit	0.04	ENSDART00000181411	iqsec2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	IQ motif and Sec7 domain 2a
chr13_-_39830999 Show fit	0.04	ENSDART00000115089	zgc:171482 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:171482
chr11_+_19060278 Show fit	0.04	ENSDART00000164294	magi1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	membrane associated guanylate kinase, WW and PDZ domain containing 1b
chr7_+_61050329 Show fit	0.03	ENSDART00000115355	nwd2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	NACHT and WD repeat domain containing 2
chr18_-_29925717 Show fit	0.03	ENSDART00000099281	mhc2dbb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	major histocompatibility complex class II DBB gene
chr7_-_72155022 Show fit	0.03	ENSDART00000187984	zmp:0000001168 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zmp:0000001168
chr18_+_15758375 Show fit	0.03	ENSDART00000137554	si:ch211-219a15.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-219a15.4
chr4_-_5302162 Show fit	0.02	ENSDART00000177099	SNAP91 (1 of many) Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-214j24.9
chr24_+_17007407 Show fit	0.02	ENSDART00000110652	zfx Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger protein, X-linked
chr11_+_13193747 Show fit	0.02	ENSDART00000173336	si:dkey-9a6.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-9a6.4
chr13_+_31172833 Show fit	0.02	ENSDART00000176378	CR931802.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr11_+_19060079 Show fit	0.01	ENSDART00000158123	magi1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	membrane associated guanylate kinase, WW and PDZ domain containing 1b
chr18_+_20838786 Show fit	0.01	ENSDART00000138692	ttc23 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tetratricopeptide repeat domain 23
chr13_+_18545819 Show fit	0.00	ENSDART00000101859 ENSDART00000110197 ENSDART00000136064	zgc:154058 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:154058
chr1_+_58442694 Show fit	0.00	ENSDART00000160897	zgc:194906 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:194906

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.5	GO:0008592	regulation of Toll signaling pathway(GO:0008592)
0.1	0.2	GO:0046104	deoxyribonucleoside metabolic process(GO:0009120) thymidine metabolic process(GO:0046104) pyrimidine deoxyribonucleoside metabolic process(GO:0046125)
0.1	0.5	GO:0046247	carotene metabolic process(GO:0016119) carotene catabolic process(GO:0016121) terpene metabolic process(GO:0042214) terpene catabolic process(GO:0046247)
0.0	0.7	GO:0045740	positive regulation of DNA replication(GO:0045740)
0.0	0.3	GO:0042407	cristae formation(GO:0042407)
0.0	0.2	GO:1901222	regulation of NIK/NF-kappaB signaling(GO:1901222)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	GO:0032045	guanyl-nucleotide exchange factor complex(GO:0032045)
0.0	0.3	GO:0061617	MICOS complex(GO:0061617)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.5	GO:0003834	beta-carotene 15,15'-monooxygenase activity(GO:0003834) carotenoid dioxygenase activity(GO:0010436)
0.0	0.2	GO:0017113	uracil binding(GO:0002058) pyrimidine nucleobase binding(GO:0002061) dihydropyrimidine dehydrogenase (NADP+) activity(GO:0017113)
0.0	0.1	GO:0004185	serine-type carboxypeptidase activity(GO:0004185)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.4	REACTOME ACTIVATION OF CHAPERONE GENES BY ATF6 ALPHA	Genes involved in Activation of Chaperone Genes by ATF6-alpha