PRJNA438478: RNAseq of wild type zebrafish germline

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
phox2bb Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000091029	paired like homeobox 2Bb

Gene	Promoter	Pearson corr. coef.	P-value	Plot
phox2bb	dr11_v1_chr14_-_17068712_17068712	0.05	8.3e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr4_-_1801519 Show fit	0.22	ENSDART00000188604 ENSDART00000135749	nudt4b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nudix (nucleoside diphosphate linked moiety X)-type motif 4b
chr8_-_53044300 Show fit	0.18	ENSDART00000191653	nr6a1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nuclear receptor subfamily 6, group A, member 1a
chr15_-_43284021 Show fit	0.18	ENSDART00000041677	serpine2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
chr10_-_13343831 Show fit	0.15	ENSDART00000135941	il11ra Links NCBI UniProt ZFIN ENSEMBL Google Show fit	interleukin 11 receptor, alpha
chr5_+_63302660 Show fit	0.14	ENSDART00000142131	si:ch73-376l24.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-376l24.2
chr22_-_14247276 Show fit	0.13	ENSDART00000033332	si:ch211-246m6.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-246m6.5
chr18_+_2228737 Show fit	0.13	ENSDART00000165301	rab27a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	RAB27A, member RAS oncogene family
chr9_-_32177117 Show fit	0.12	ENSDART00000078568	sf3b1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	splicing factor 3b, subunit 1
chr22_-_10156581 Show fit	0.12	ENSDART00000168304	rbck1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	RanBP-type and C3HC4-type zinc finger containing 1
chr14_-_470505 Show fit	0.10	ENSDART00000067147	ANKRD50 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ankyrin repeat domain 50
chr9_-_27398369 Show fit	0.10	ENSDART00000186499	tex30 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	testis expressed 30
chr22_+_2751887 Show fit	0.10	ENSDART00000133652	si:dkey-20i20.11 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-20i20.11
chr21_+_25236297 Show fit	0.09	ENSDART00000112783	tmem45b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane protein 45B
chr4_-_2219705 Show fit	0.09	ENSDART00000131046	si:ch73-278m9.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-278m9.1
chr24_+_28953089 Show fit	0.09	ENSDART00000153761	rnpc3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	RNA-binding region (RNP1, RRM) containing 3
chr22_+_23359369 Show fit	0.09	ENSDART00000170886	dennd1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	DENN/MADD domain containing 1B
chr6_+_25257728 Show fit	0.09	ENSDART00000162581	kyat3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	kynurenine aminotransferase 3
chr22_+_508290 Show fit	0.09	ENSDART00000135403	nuak2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	NUAK family, SNF1-like kinase, 2
chr1_-_31534089 Show fit	0.08	ENSDART00000007770	lbx1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ladybird homeobox 1b
chr2_-_17393216 Show fit	0.08	ENSDART00000123137	st3gal3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ST3 beta-galactoside alpha-2,3-sialyltransferase 3b
chr10_+_11261576 Show fit	0.07	ENSDART00000155333	hsdl2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	hydroxysteroid dehydrogenase like 2
chr8_-_49728590 Show fit	0.07	ENSDART00000135714 ENSDART00000138810 ENSDART00000098319	gkap1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	G kinase anchoring protein 1
chr24_+_19415124 Show fit	0.07	ENSDART00000186931	sulf1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sulfatase 1
chr3_-_48716422 Show fit	0.07	ENSDART00000164979	si:ch211-114m9.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-114m9.1
chr21_-_13123176 Show fit	0.07	ENSDART00000144866 ENSDART00000024616	fam219aa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	family with sequence similarity 219, member Aa
chr5_+_29851433 Show fit	0.07	ENSDART00000143434	ubash3ba Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ubiquitin associated and SH3 domain containing Ba
chr2_-_17392799 Show fit	0.06	ENSDART00000136470 ENSDART00000141188	st3gal3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ST3 beta-galactoside alpha-2,3-sialyltransferase 3b
chr1_+_10318089 Show fit	0.05	ENSDART00000029774	pip4p1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1b
chr17_-_4245902 Show fit	0.05	ENSDART00000151851	gdf3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	growth differentiation factor 3
chr3_-_26787430 Show fit	0.03	ENSDART00000087047	rab40c Links NCBI UniProt ZFIN ENSEMBL Google Show fit	RAB40c, member RAS oncogene family
chr13_+_33268657 Show fit	0.03	ENSDART00000002095	tmem39b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane protein 39B
chr7_+_38811800 Show fit	0.02	ENSDART00000052322	zgc:110699 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:110699
chr23_+_16638639 Show fit	0.02	ENSDART00000143545	snphb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	syntaphilin b
chr6_+_40922572 Show fit	0.02	ENSDART00000133599 ENSDART00000002728 ENSDART00000145153	eif4enif1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	eukaryotic translation initiation factor 4E nuclear import factor 1
chr9_+_54039006 Show fit	0.02	ENSDART00000112441	tlr7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	toll-like receptor 7
chr15_+_5360407 Show fit	0.02	ENSDART00000110420	or112-1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	odorant receptor, family A, subfamily 112, member 1
chr6_+_11249706 Show fit	0.02	ENSDART00000186547 ENSDART00000193287	atg9a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATG9 autophagy related 9 homolog A (S. cerevisiae)
chr1_-_21287724 Show fit	0.02	ENSDART00000193900	npy1r Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neuropeptide Y receptor Y1
chr5_+_60590796 Show fit	0.02	ENSDART00000159859	tmem132e Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane protein 132E
chr1_-_15797663 Show fit	0.01	ENSDART00000177122	SGCZ Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sarcoglycan zeta
chr8_-_33381913 Show fit	0.01	ENSDART00000076420	lmx1bb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	LIM homeobox transcription factor 1, beta b
chr14_-_33481428 Show fit	0.01	ENSDART00000147059 ENSDART00000140001 ENSDART00000124242 ENSDART00000164836 ENSDART00000190104 ENSDART00000186833 ENSDART00000180873	lamp2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lysosomal-associated membrane protein 2
chr14_-_4556896 Show fit	0.01	ENSDART00000044678 ENSDART00000192863	GABRA2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	gamma-aminobutyric acid type A receptor alpha2 subunit
chr23_-_2901167 Show fit	0.01	ENSDART00000165955 ENSDART00000190616	zhx3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc fingers and homeoboxes 3
chr15_-_39955785 Show fit	0.01	ENSDART00000154556	msh5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mutS homolog 5
chr4_-_9891874 Show fit	0.01	ENSDART00000067193	adm2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adrenomedullin 2a
chr10_-_27049170 Show fit	0.01	ENSDART00000143451	cnih2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cornichon family AMPA receptor auxiliary protein 2
chr6_+_24420523 Show fit	0.00	ENSDART00000185461	tgfbr3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transforming growth factor, beta receptor III
chr23_-_16485190 Show fit	0.00	ENSDART00000155038	si:dkeyp-100a5.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkeyp-100a5.4
chr6_+_11250033 Show fit	0.00	ENSDART00000065411 ENSDART00000132677	atg9a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATG9 autophagy related 9 homolog A (S. cerevisiae)
chr13_+_22476742 Show fit	0.00	ENSDART00000078759 ENSDART00000130101 ENSDART00000137220 ENSDART00000133065 ENSDART00000147348	ldb3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	LIM domain binding 3a

View svg image
View png image

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0071543	diphosphoinositol polyphosphate metabolic process(GO:0071543) diadenosine pentaphosphate metabolic process(GO:1901906) diadenosine pentaphosphate catabolic process(GO:1901907) diadenosine hexaphosphate metabolic process(GO:1901908) diadenosine hexaphosphate catabolic process(GO:1901909) adenosine 5'-(hexahydrogen pentaphosphate) metabolic process(GO:1901910) adenosine 5'-(hexahydrogen pentaphosphate) catabolic process(GO:1901911)
0.0	0.1	GO:0097039	protein linear polyubiquitination(GO:0097039)
0.0	0.1	GO:0099563	modification of synaptic structure(GO:0099563)
0.0	0.1	GO:0006363	termination of RNA polymerase I transcription(GO:0006363)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0071797	LUBAC complex(GO:0071797)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0008486	endopolyphosphatase activity(GO:0000298) diphosphoinositol-polyphosphate diphosphatase activity(GO:0008486) bis(5'-adenosyl)-hexaphosphatase activity(GO:0034431) bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)
0.0	0.1	GO:0033130	acetylcholine receptor binding(GO:0033130)
0.0	0.1	GO:0030626	U12 snRNA binding(GO:0030626)
0.0	0.1	GO:0008118	N-acetyllactosaminide alpha-2,3-sialyltransferase activity(GO:0008118)