PRJNA438478: RNAseq of wild type zebrafish germline

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
phox2ba Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000075330	paired like homeobox 2Ba

Gene	Promoter	Pearson corr. coef.	P-value	Plot
phox2ba	dr11_v1_chr1_-_19079957_19079957	0.51	3.2e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr9_+_22634073 Show fit	0.19	ENSDART00000181822	etv5a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ets variant 5a
chr14_+_31493306 Show fit	0.18	ENSDART00000138341	phf6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PHD finger protein 6
chr8_+_16758304 Show fit	0.18	ENSDART00000133514	elovl7a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ELOVL fatty acid elongase 7a
chr8_-_38355268 Show fit	0.18	ENSDART00000129597	sorbs3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sorbin and SH3 domain containing 3
chr17_-_20202725 Show fit	0.17	ENSDART00000133650	ecd Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ecdysoneless homolog (Drosophila)
chr20_-_38801981 Show fit	0.17	ENSDART00000125333	cad Links NCBI UniProt ZFIN ENSEMBL Google Show fit	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
chr13_-_12021566 Show fit	0.17	ENSDART00000125430	pprc1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	peroxisome proliferator-activated receptor gamma, coactivator-related 1
chr7_-_41746427 Show fit	0.14	ENSDART00000174232	arl8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ADP-ribosylation factor-like 8
chr4_-_77551860 Show fit	0.14	ENSDART00000188176	AL935186.6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr22_+_2533514 Show fit	0.14	ENSDART00000147967	si:ch73-92e7.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-92e7.4
chr21_+_18910502 Show fit	0.14	ENSDART00000147567	smpd4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sphingomyelin phosphodiesterase 4
chr3_-_40054615 Show fit	0.12	ENSDART00000003511 ENSDART00000102540 ENSDART00000146121	llgl1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lethal giant larvae homolog 1 (Drosophila)
chr4_-_4834347 Show fit	0.11	ENSDART00000141803	coa6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cytochrome c oxidase assembly factor 6
chr15_+_2500510 Show fit	0.11	ENSDART00000180329	wdr53 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	WD repeat domain 53
chr4_-_4834617 Show fit	0.10	ENSDART00000141539	coa6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cytochrome c oxidase assembly factor 6
chr17_+_24821627 Show fit	0.10	ENSDART00000112389	wdr43 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	WD repeat domain 43
chr12_-_30043809 Show fit	0.10	ENSDART00000150220 ENSDART00000075889 ENSDART00000148847	trub1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	TruB pseudouridine (psi) synthase family member 1
chr3_+_23247325 Show fit	0.09	ENSDART00000114190	ppp1r9ba Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein phosphatase 1, regulatory subunit 9Ba
chr8_+_7854130 Show fit	0.09	ENSDART00000165575	cxxc1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	CXXC finger protein 1a
chr5_-_44829719 Show fit	0.09	ENSDART00000019104	fbp2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fructose-1,6-bisphosphatase 2
chr16_+_53387085 Show fit	0.08	ENSDART00000154223 ENSDART00000101404	kif13a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	kinesin family member 13A
chr11_+_24800156 Show fit	0.08	ENSDART00000131976	adipor1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adiponectin receptor 1a
chr4_+_76509294 Show fit	0.08	ENSDART00000099899	ms4a17a.17 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	membrane-spanning 4-domains, subfamily A, member 17A.17
chr20_-_18736281 Show fit	0.08	ENSDART00000142837	enpp5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ectonucleotide pyrophosphatase/phosphodiesterase 5
chr17_+_27134806 Show fit	0.08	ENSDART00000151901	rps6ka1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ribosomal protein S6 kinase a, polypeptide 1
chr6_-_11800427 Show fit	0.07	ENSDART00000126243	march7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	membrane-associated ring finger (C3HC4) 7
chr18_+_27598755 Show fit	0.07	ENSDART00000193808	cd82b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	CD82 molecule b
chr8_+_10862353 Show fit	0.07	ENSDART00000140717	brpf3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	bromodomain and PHD finger containing, 3b
chr8_+_43016714 Show fit	0.06	ENSDART00000142671	rassf2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Ras association (RalGDS/AF-6) domain family member 2a
chr24_+_19542323 Show fit	0.06	ENSDART00000140379 ENSDART00000142830	sulf1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sulfatase 1
chr1_+_10074343 Show fit	0.06	ENSDART00000190194	si:ch73-132f6.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-132f6.5
chr2_+_44512324 Show fit	0.05	ENSDART00000155017 ENSDART00000156310 ENSDART00000156686	pask Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PAS domain containing serine/threonine kinase
chr19_-_33850201 Show fit	0.05	ENSDART00000168583	otud6b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	OTU domain containing 6B
chr1_+_10074601 Show fit	0.05	ENSDART00000168473	si:ch73-132f6.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-132f6.5
chr18_-_5111449 Show fit	0.05	ENSDART00000046902	pdcd10a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	programmed cell death 10a
chr1_+_26677406 Show fit	0.04	ENSDART00000183427 ENSDART00000180366 ENSDART00000181997	si:dkey-25o16.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-25o16.4
chr18_+_27000850 Show fit	0.04	ENSDART00000188906 ENSDART00000086131	pik3c2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha
chr2_-_26590628 Show fit	0.04	ENSDART00000025120	ndc1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	NDC1 transmembrane nucleoporin
chr6_+_16493755 Show fit	0.04	ENSDART00000126318	si:ch73-193c12.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-193c12.2
chr24_-_25574967 Show fit	0.04	ENSDART00000189828	cnksr2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	connector enhancer of kinase suppressor of Ras 2a
chr8_-_36370552 Show fit	0.04	ENSDART00000097932 ENSDART00000148323	si:busm1-104n07.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:busm1-104n07.3
chr1_+_57774454 Show fit	0.04	ENSDART00000152507	si:dkey-1c7.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-1c7.2
chr23_-_14830627 Show fit	0.04	ENSDART00000134659	sla2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Src-like-adaptor 2
chr15_-_23908605 Show fit	0.03	ENSDART00000185578	usp32 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ubiquitin specific peptidase 32
chr1_+_26676758 Show fit	0.03	ENSDART00000152299	si:dkey-25o16.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-25o16.4
chr14_-_47314011 Show fit	0.03	ENSDART00000178523	fstl5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	follistatin-like 5
chr9_+_55321322 Show fit	0.03	ENSDART00000111111 ENSDART00000191579	nlgn4b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neuroligin 4b
chr19_+_42047427 Show fit	0.02	ENSDART00000180225 ENSDART00000145356	si:ch211-13c6.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-13c6.2
chr18_+_27001115 Show fit	0.02	ENSDART00000133547	pik3c2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha
chr13_-_34862452 Show fit	0.02	ENSDART00000134573 ENSDART00000047552	sptlc3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	serine palmitoyltransferase, long chain base subunit 3
chr6_+_33537267 Show fit	0.02	ENSDART00000040334	pik3r3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	phosphoinositide-3-kinase, regulatory subunit 3b (gamma)
chr21_+_44300689 Show fit	0.02	ENSDART00000186298 ENSDART00000142810	gabra3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	gamma-aminobutyric acid (GABA) A receptor, alpha 3
chr11_+_13223625 Show fit	0.02	ENSDART00000161275	abcb11b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATP-binding cassette, sub-family B (MDR/TAP), member 11b
chr21_+_40239192 Show fit	0.02	ENSDART00000135857	or115-9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	odorant receptor, family F, subfamily 115, member 9
chr16_+_47428721 Show fit	0.01	ENSDART00000180597 ENSDART00000032309	slc25a32b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 25 (mitochondrial folate carrier), member 32b
chr2_-_9971609 Show fit	0.01	ENSDART00000137924 ENSDART00000048655 ENSDART00000131613	zgc:55943 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:55943
chr16_-_25519762 Show fit	0.01	ENSDART00000146479 ENSDART00000142062	dtnbp1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	dystrobrevin binding protein 1a
chr24_+_39227519 Show fit	0.01	ENSDART00000184611 ENSDART00000193494 ENSDART00000190728 ENSDART00000168705	MPRIP Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-103b11.2
chr5_-_25236340 Show fit	0.01	ENSDART00000162774	abca2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATP-binding cassette, sub-family A (ABC1), member 2
chr3_+_57788761 Show fit	0.01	ENSDART00000149741	si:ch73-362i18.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-362i18.1
chr14_-_45702721 Show fit	0.01	ENSDART00000165727	si:dkey-226n24.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-226n24.1
chr8_-_11835607 Show fit	0.01	ENSDART00000183601	rapgef1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Rap guanine nucleotide exchange factor (GEF) 1a
chr7_-_20796935 Show fit	0.01	ENSDART00000162357	dnajc3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	DnaJ (Hsp40) homolog, subfamily C, member 3b
chr8_+_10835456 Show fit	0.01	ENSDART00000151388	mapk13 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mitogen-activated protein kinase 13
chr1_+_58205904 Show fit	0.01	ENSDART00000147324	si:dkey-222h21.12 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-222h21.12
chr24_-_27436319 Show fit	0.01	ENSDART00000171489	si:dkey-25o1.7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-25o1.7
chr8_+_31821396 Show fit	0.01	ENSDART00000077053	plcxd3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	phosphatidylinositol-specific phospholipase C, X domain containing 3
chr21_+_40225915 Show fit	0.00	ENSDART00000048475 ENSDART00000174122	or115-12 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	odorant receptor, family F, subfamily 115, member 12
chr14_-_2355833 Show fit	0.00	ENSDART00000157677	PCDHGC3 (1 of many) Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-233f7.6
chr17_-_20717845 Show fit	0.00	ENSDART00000150037	ank3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ankyrin 3b
chr6_-_16493516 Show fit	0.00	ENSDART00000022499	psmb3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	proteasome subunit beta 3
chr12_+_32368574 Show fit	0.00	ENSDART00000086389	ANKFN1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-277e21.2

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0021563	glossopharyngeal nerve development(GO:0021563)
0.0	0.1	GO:1903292	protein localization to Golgi membrane(GO:1903292)
0.0	0.1	GO:0046351	sucrose metabolic process(GO:0005985) sucrose biosynthetic process(GO:0005986) disaccharide biosynthetic process(GO:0046351)
0.0	0.1	GO:1990481	mRNA pseudouridine synthesis(GO:1990481)
0.0	0.2	GO:0060217	hemangioblast cell differentiation(GO:0060217)
0.0	0.0	GO:1903358	regulation of Golgi organization(GO:1903358)
0.0	0.1	GO:0051988	regulation of attachment of spindle microtubules to kinetochore(GO:0051988)
0.0	0.1	GO:0006685	sphingomyelin catabolic process(GO:0006685)
0.0	0.2	GO:0008535	respiratory chain complex IV assembly(GO:0008535)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0090443	FAR/SIN/STRIPAK complex(GO:0090443)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0016743	carboxyl- or carbamoyltransferase activity(GO:0016743)
0.0	0.1	GO:0042132	fructose 1,6-bisphosphate 1-phosphatase activity(GO:0042132)