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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for noto+vax1

Z-value: 0.37

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Transcription factors associated with noto+vax1

Gene Symbol Gene ID Gene Info
noto
ENSDARG00000021201 notochord homeobox
vax1
ENSDARG00000021916 ventral anterior homeobox 1
vax1
ENSDARG00000114230 ventral anterior homeobox 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
vax1dr11_v1_chr17_-_21441464_21441464-0.897.1e-07Click!
notodr11_v1_chr13_+_14976108_14976108-0.126.2e-01Click!

Activity profile of noto+vax1 motif

Sorted Z-values of noto+vax1 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr22_-_21897203 0.60 ENSDART00000158501
ENSDART00000105566
ENSDART00000136795
gna11a
guanine nucleotide binding protein (G protein), alpha 11a (Gq class)
chr13_-_35808904 0.55 ENSDART00000171667
map3k4
mitogen-activated protein kinase kinase kinase 4
chr12_+_47446158 0.51 ENSDART00000152857
fmn2b
formin 2b
chr20_+_29209767 0.49 ENSDART00000141252
katnbl1
katanin p80 subunit B-like 1
chr20_+_29209615 0.46 ENSDART00000062350
katnbl1
katanin p80 subunit B-like 1
chr20_+_29209926 0.46 ENSDART00000152949
ENSDART00000153016
katnbl1
katanin p80 subunit B-like 1
chr19_-_2861444 0.46 ENSDART00000169053
clec3bb
C-type lectin domain family 3, member Bb
chr10_+_16036246 0.45 ENSDART00000141586
ENSDART00000135868
ENSDART00000065037
ENSDART00000124502
lmnb1
lamin B1
chr15_-_43284021 0.43 ENSDART00000041677
serpine2
serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
chr6_+_32382743 0.43 ENSDART00000190009
dock7
dedicator of cytokinesis 7
chr2_-_21819421 0.39 ENSDART00000121586
chd7
chromodomain helicase DNA binding protein 7
chr11_+_11303458 0.39 ENSDART00000162486
ENSDART00000160703
si:dkey-23f9.4
si:dkey-23f9.4
chr17_+_21902058 0.39 ENSDART00000142178
plekha1a
pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1a
chr10_+_28160265 0.38 ENSDART00000022484
rnft1
ring finger protein, transmembrane 1
chr5_+_41477954 0.38 ENSDART00000185871
pias2
protein inhibitor of activated STAT, 2
chr9_-_54248182 0.37 ENSDART00000129540
larsa
leucyl-tRNA synthetase a
chr5_+_20257225 0.35 ENSDART00000127919
ssh1a
slingshot protein phosphatase 1a
chr14_+_51056605 0.35 ENSDART00000159639
CABZ01078593.1

chr1_+_513986 0.34 ENSDART00000109083
ENSDART00000081945
txnl4b
thioredoxin-like 4B
chr19_-_20430892 0.34 ENSDART00000111409
tbc1d5
TBC1 domain family, member 5
chr8_-_25034411 0.34 ENSDART00000135973
nfyal
nuclear transcription factor Y, alpha, like
chr10_+_7593185 0.34 ENSDART00000162617
ENSDART00000162590
ENSDART00000171744
ppp2cb
protein phosphatase 2, catalytic subunit, beta isozyme
chr5_+_41477526 0.33 ENSDART00000153567
pias2
protein inhibitor of activated STAT, 2
chr16_-_22544047 0.33 ENSDART00000131657
cgna
cingulin a
chr8_-_39822917 0.32 ENSDART00000067843
zgc:162025
zgc:162025
chr16_+_13818743 0.31 ENSDART00000090191
flcn
folliculin
chr5_-_15283509 0.31 ENSDART00000052712
gnb1l
guanine nucleotide binding protein (G protein), beta polypeptide 1-like
chr16_+_13818500 0.31 ENSDART00000135245
flcn
folliculin
chr8_-_50888806 0.31 ENSDART00000053750
acsl2
acyl-CoA synthetase long chain family member 2
chr24_+_19415124 0.31 ENSDART00000186931
sulf1
sulfatase 1
chr21_-_26490186 0.29 ENSDART00000009889
zgc:110540
zgc:110540
chr6_-_19271210 0.28 ENSDART00000163628
ENSDART00000159124
zgc:174863
zgc:174863
chr21_+_8427059 0.27 ENSDART00000143151
dennd1a
DENN/MADD domain containing 1A
chr17_+_16046314 0.26 ENSDART00000154554
ENSDART00000154338
ENSDART00000155336
si:ch73-204p21.2
si:ch73-204p21.2
chr9_+_30421489 0.25 ENSDART00000145025
ENSDART00000132058
zgc:113314
zgc:113314
chr13_-_24257631 0.25 ENSDART00000146524
urb2
URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
chr4_+_9011448 0.24 ENSDART00000192357
samm50l
sorting and assembly machinery component 50 homolog, like
chr9_-_14683574 0.23 ENSDART00000144022
pard3bb
par-3 family cell polarity regulator beta b
chr19_-_18313303 0.23 ENSDART00000164644
ENSDART00000167480
ENSDART00000163104
si:dkey-208k4.2
si:dkey-208k4.2
chr6_-_40922971 0.22 ENSDART00000155363
sfi1
SFI1 centrin binding protein
chr19_+_32401278 0.22 ENSDART00000184353
atxn1a
ataxin 1a
chr21_-_42876565 0.21 ENSDART00000126480
zmp:0000001268
zmp:0000001268
chr19_-_6988837 0.21 ENSDART00000145741
ENSDART00000167640
znf384l
zinc finger protein 384 like
chr14_-_14640401 0.21 ENSDART00000168027
ENSDART00000167521
znf185
zinc finger protein 185 with LIM domain
chr12_+_48803098 0.18 ENSDART00000074768
ppifb
peptidylprolyl isomerase Fb
chr16_-_7828838 0.18 ENSDART00000191434
ENSDART00000108653
tcaim
T cell activation inhibitor, mitochondrial
chr25_+_28825657 0.17 ENSDART00000153625
nfybb
nuclear transcription factor Y, beta b
chr20_-_1635922 0.16 ENSDART00000181502
CR846082.1

chr6_-_57539141 0.16 ENSDART00000156967
itcha
itchy E3 ubiquitin protein ligase a
chr5_-_66397688 0.14 ENSDART00000161483
hip1rb
huntingtin interacting protein 1 related b
chr11_+_43043171 0.13 ENSDART00000180344
CABZ01092982.1

chr15_+_31899312 0.13 ENSDART00000155315
frya
furry homolog a (Drosophila)
chr15_+_31701716 0.12 ENSDART00000113370
b3glcta
beta 3-glucosyltransferase a
chr4_+_21129752 0.12 ENSDART00000169764
syt1a
synaptotagmin Ia
chr1_-_51719110 0.11 ENSDART00000190574
rnaseh2a
ribonuclease H2, subunit A
chr19_+_2631565 0.11 ENSDART00000171487
fam126a
family with sequence similarity 126, member A
chr7_-_12464412 0.09 ENSDART00000178723
adamtsl3
ADAMTS-like 3
chr6_-_30954268 0.09 ENSDART00000154523
pde4ba
phosphodiesterase 4B, cAMP-specific a
chr2_-_26720854 0.08 ENSDART00000148110
si:dkey-181m9.8
si:dkey-181m9.8
chr18_-_2727764 0.08 ENSDART00000160841
ARHGEF17
si:ch211-248g20.5
chr1_-_31534089 0.07 ENSDART00000007770
lbx1b
ladybird homeobox 1b
chr22_-_392224 0.06 ENSDART00000124720
CABZ01072989.1

chr4_-_77506362 0.06 ENSDART00000174387
ENSDART00000181181
CABZ01087415.1

chr10_-_2524917 0.05 ENSDART00000188642
CU856539.1

chr13_+_35339182 0.04 ENSDART00000019323
jag1b
jagged 1b
chr9_-_22310919 0.04 ENSDART00000108719
crygm2d10
crystallin, gamma M2d10
chr18_+_9362455 0.03 ENSDART00000187025
sema3ab
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab
chr22_+_19218733 0.02 ENSDART00000183212
ENSDART00000133595
si:dkey-21e2.7
si:dkey-21e2.7
chr4_+_73085993 0.01 ENSDART00000165749
si:ch73-170d6.2
si:ch73-170d6.2
chr19_-_7690975 0.01 ENSDART00000151384
si:dkey-204a24.10
si:dkey-204a24.10
chr2_-_39558643 0.01 ENSDART00000139860
ENSDART00000145231
ENSDART00000141721
cbln7
cerebellin 7
chr19_+_9295244 0.01 ENSDART00000132255
ENSDART00000144299
si:ch73-15n24.1
si:ch73-15n24.1
chr5_+_30635309 0.01 ENSDART00000183769
abcg4a
ATP-binding cassette, sub-family G (WHITE), member 4a
chr15_+_5360407 0.00 ENSDART00000110420
or112-1
odorant receptor, family A, subfamily 112, member 1
chr3_-_50443607 0.00 ENSDART00000074036
rcvrna
recoverin a

Network of associatons between targets according to the STRING database.

First level regulatory network of noto+vax1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 GO:0030511 positive regulation of transforming growth factor beta receptor signaling pathway(GO:0030511) positive regulation of cellular response to transforming growth factor beta stimulus(GO:1903846)
0.1 0.2 GO:0007008 outer mitochondrial membrane organization(GO:0007008) protein import into mitochondrial outer membrane(GO:0045040)
0.1 0.4 GO:1904292 regulation of ERAD pathway(GO:1904292)
0.1 0.2 GO:0051660 establishment of centrosome localization(GO:0051660)
0.1 0.3 GO:0097065 anterior head development(GO:0097065)
0.0 0.3 GO:2000290 smoothened signaling pathway involved in ventral spinal cord patterning(GO:0021910) regulation of myotome development(GO:2000290)
0.0 0.4 GO:0009303 rRNA transcription(GO:0009303) swim bladder maturation(GO:0048796) swim bladder inflation(GO:0048798)
0.0 0.7 GO:0016925 protein sumoylation(GO:0016925)
0.0 0.1 GO:0043137 DNA replication, removal of RNA primer(GO:0043137)
0.0 0.2 GO:0070301 cellular response to hydrogen peroxide(GO:0070301)
0.0 0.3 GO:0060158 phospholipase C-activating dopamine receptor signaling pathway(GO:0060158)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.5 GO:0016602 CCAAT-binding factor complex(GO:0016602)
0.0 0.2 GO:0001401 mitochondrial sorting and assembly machinery complex(GO:0001401)
0.0 0.1 GO:0032299 ribonuclease H2 complex(GO:0032299)
0.0 0.1 GO:0042584 chromaffin granule membrane(GO:0042584)
0.0 0.3 GO:0005682 U5 snRNP(GO:0005682)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 GO:0031826 type 2A serotonin receptor binding(GO:0031826)
0.1 0.7 GO:0061665 SUMO ligase activity(GO:0061665)
0.0 0.3 GO:0019136 deoxynucleoside kinase activity(GO:0019136)
0.0 0.3 GO:0047676 arachidonate-CoA ligase activity(GO:0047676)
0.0 0.3 GO:0008449 N-acetylglucosamine-6-sulfatase activity(GO:0008449)
0.0 0.1 GO:0004523 RNA-DNA hybrid ribonuclease activity(GO:0004523)
0.0 0.4 GO:0030165 PDZ domain binding(GO:0030165)
0.0 0.1 GO:0043325 phosphatidylinositol-3,4-bisphosphate binding(GO:0043325)
0.0 0.2 GO:0016018 cyclosporin A binding(GO:0016018)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.7 PID IL12 STAT4 PATHWAY IL12 signaling mediated by STAT4
0.0 0.5 PID P38 MKK3 6PATHWAY p38 MAPK signaling pathway
0.0 0.4 PID WNT NONCANONICAL PATHWAY Noncanonical Wnt signaling pathway
0.0 0.5 PID CASPASE PATHWAY Caspase cascade in apoptosis

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 REACTOME ERKS ARE INACTIVATED Genes involved in ERKs are inactivated
0.0 0.5 REACTOME APOPTOTIC CLEAVAGE OF CELLULAR PROTEINS Genes involved in Apoptotic cleavage of cellular proteins