PRJNA438478: RNAseq of wild type zebrafish germline

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
nkx1.2lb Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000099427	NK1 transcription factor related 2-like,b

Gene	Promoter	Pearson corr. coef.	P-value	Plot
nkx1.2lb	dr11_v1_chr14_+_15064870_15064870	-0.36	1.4e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr8_-_23780334 Show fit	0.79	ENSDART00000145179 ENSDART00000145894	zgc:195245 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:195245
chr10_-_34002185 Show fit	0.74	ENSDART00000046599	zar1l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zygote arrest 1-like
chr2_+_6253246 Show fit	0.72	ENSDART00000058256 ENSDART00000076700	zp3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zona pellucida glycoprotein 3b
chr20_-_14114078 Show fit	0.65	ENSDART00000168434 ENSDART00000104032	si:ch211-223m11.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-223m11.2
chr20_+_14114258 Show fit	0.58	ENSDART00000044937	kcns3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3b
chr19_-_18313303 Show fit	0.44	ENSDART00000164644 ENSDART00000167480 ENSDART00000163104	si:dkey-208k4.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-208k4.2
chr17_+_24821627 Show fit	0.38	ENSDART00000112389	wdr43 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	WD repeat domain 43
chr25_-_32869794 Show fit	0.35	ENSDART00000162784	tmem266 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane protein 266
chr4_+_11458078 Show fit	0.34	ENSDART00000037600	ankrd16 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ankyrin repeat domain 16
chr9_-_50000144 Show fit	0.32	ENSDART00000123416	scn1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sodium channel, voltage-gated, type I, alpha
chr1_+_55758257 Show fit	0.27	ENSDART00000139312	tecrb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	trans-2,3-enoyl-CoA reductase b
chr13_-_9236905 Show fit	0.26	ENSDART00000142597 ENSDART00000147176 ENSDART00000181670	HTRA2 (1 of many) Links NCBI UniProt ZFIN ENSEMBL Google Show fit si:dkey-112g5.12 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-33c12.12 si:dkey-112g5.12
chr13_-_9213207 Show fit	0.24	ENSDART00000139861 ENSDART00000140524	HTRA2 (1 of many) Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-33c12.11
chr20_+_36812368 Show fit	0.22	ENSDART00000062931	abracl Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ABRA C-terminal like
chr11_-_16152400 Show fit	0.21	ENSDART00000123665	arpc4l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	actin related protein 2/3 complex, subunit 4, like
chr21_+_4410733 Show fit	0.21	ENSDART00000136831 ENSDART00000131612	HTRA2 (1 of many) Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-84o3.7
chr21_+_4328348 Show fit	0.21	ENSDART00000131658 ENSDART00000143799	HTRA2 (1 of many) Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-84o3.7
chr8_+_18011522 Show fit	0.18	ENSDART00000136756	ssbp3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	single stranded DNA binding protein 3b
chr1_-_48933 Show fit	0.18	ENSDART00000171162	ildr1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	immunoglobulin-like domain containing receptor 1a
chr23_+_29358188 Show fit	0.18	ENSDART00000189242	tardbpl Links NCBI UniProt ZFIN ENSEMBL Google Show fit	TAR DNA binding protein, like
chr2_+_10007113 Show fit	0.18	ENSDART00000155213	slc35a3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3b
chr2_+_10006839 Show fit	0.17	ENSDART00000160304	slc35a3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3b
chr7_-_64971839 Show fit	0.17	ENSDART00000164682	sinhcafl Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SIN3-HDAC complex associated factor, like
chr13_-_17723417 Show fit	0.17	ENSDART00000183834	vdac2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	voltage-dependent anion channel 2
chr17_+_16429826 Show fit	0.17	ENSDART00000136078	efcab11 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	EF-hand calcium binding domain 11
chr20_-_37813863 Show fit	0.17	ENSDART00000147529	batf3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	basic leucine zipper transcription factor, ATF-like 3
chr13_+_35955562 Show fit	0.17	ENSDART00000137377	si:ch211-67f13.7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-67f13.7
chr13_+_9521629 Show fit	0.16	ENSDART00000149870 ENSDART00000137666	si:dkey-19p15.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-19p15.4
chr21_+_4348600 Show fit	0.16	ENSDART00000138463	HTRA2 (1 of many) Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-84o3.2
chr13_-_9159852 Show fit	0.16	ENSDART00000170185 ENSDART00000158697 ENSDART00000143393 ENSDART00000164973 ENSDART00000159910	HTRA2 (1 of many) Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-112g5.16
chr13_-_9257728 Show fit	0.15	ENSDART00000145985 ENSDART00000169991 ENSDART00000132764	HTRA2 (1 of many) Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:173425
chr5_-_33298352 Show fit	0.15	ENSDART00000015076	zgc:103692 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:103692
chr2_+_50608099 Show fit	0.15	ENSDART00000185805 ENSDART00000111135	neurod6b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neuronal differentiation 6b
chr13_+_12761707 Show fit	0.15	ENSDART00000015127	zgc:100846 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:100846
chr13_+_9468535 Show fit	0.15	ENSDART00000135088 ENSDART00000164270 ENSDART00000099619 ENSDART00000164656	HTRA2 (1 of many) Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-265c15.6
chr7_+_20384408 Show fit	0.15	ENSDART00000173809	si:dkey-33c9.6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-33c9.6
chr6_+_23026714 Show fit	0.14	ENSDART00000124948	srp68 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	signal recognition particle 68
chr21_+_4429001 Show fit	0.14	ENSDART00000134520	HTRA2 (1 of many) Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-84o3.6
chr13_-_9111927 Show fit	0.14	ENSDART00000133815 ENSDART00000109783 ENSDART00000142540 ENSDART00000192613	HTRA2 (1 of many) Links NCBI UniProt ZFIN ENSEMBL Google Show fit si:dkey-112g5.12 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-19p15.4 si:dkey-112g5.12
chr13_-_6279684 Show fit	0.13	ENSDART00000092105	agpat5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)
chr3_-_40836081 Show fit	0.13	ENSDART00000143135	wipi2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	WD repeat domain, phosphoinositide interacting 2
chr12_-_19119176 Show fit	0.12	ENSDART00000149180	aco2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	aconitase 2, mitochondrial
chr20_+_43925266 Show fit	0.12	ENSDART00000037379	clic5b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chloride intracellular channel 5b
chr13_-_9184132 Show fit	0.12	ENSDART00000135289 ENSDART00000136309 ENSDART00000132630	HTRA2 (1 of many) Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-33c12.10
chr13_-_9045879 Show fit	0.11	ENSDART00000155463 ENSDART00000140041 ENSDART00000137454	si:dkey-112g5.11 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-112g5.11
chr7_-_40630698 Show fit	0.11	ENSDART00000134547	ube3c Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ubiquitin protein ligase E3C
chr7_+_20383841 Show fit	0.11	ENSDART00000052906	si:dkey-33c9.6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-33c9.6
chr7_-_59123066 Show fit	0.11	ENSDART00000175438	dennd4c Links NCBI UniProt ZFIN ENSEMBL Google Show fit	DENN/MADD domain containing 4C
chr13_-_9070754 Show fit	0.10	ENSDART00000143783 ENSDART00000102121 ENSDART00000140820 ENSDART00000184210	si:dkey-112g5.12 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-112g5.12
chr12_-_4249000 Show fit	0.10	ENSDART00000059298	zgc:92313 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:92313
chr3_+_17537352 Show fit	0.10	ENSDART00000104549	hcrt Links NCBI UniProt ZFIN ENSEMBL Google Show fit	hypocretin (orexin) neuropeptide precursor
chr1_-_8140763 Show fit	0.09	ENSDART00000091508	FAM83G Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkeyp-9d4.4
chr13_-_30142087 Show fit	0.09	ENSDART00000110157	tysnd1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	trypsin domain containing 1
chr13_+_9496748 Show fit	0.08	ENSDART00000147050 ENSDART00000102120	CR848040.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr17_+_21902058 Show fit	0.08	ENSDART00000142178	plekha1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1a
chr21_+_4368735 Show fit	0.07	ENSDART00000182817	CT027677.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr16_+_4078240 Show fit	0.07	ENSDART00000160890	inpp5b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	inositol polyphosphate-5-phosphatase B
chr17_-_53329704 Show fit	0.05	ENSDART00000193895	exd1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	exonuclease 3'-5' domain containing 1
chr10_-_105100 Show fit	0.05	ENSDART00000145716	ttc3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tetratricopeptide repeat domain 3
chr17_-_15189397 Show fit	0.05	ENSDART00000133710 ENSDART00000110507	wdhd1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	WD repeat and HMG-box DNA binding protein 1
chr6_-_12275836 Show fit	0.05	ENSDART00000189980	pkp4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	plakophilin 4
chr7_+_24881680 Show fit	0.04	ENSDART00000058843	krcp Links NCBI UniProt ZFIN ENSEMBL Google Show fit	kelch repeat-containing protein
chr9_-_35334642 Show fit	0.04	ENSDART00000157195	ncam2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neural cell adhesion molecule 2
chr1_-_44812014 Show fit	0.04	ENSDART00000139044	si:dkey-9i23.8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-9i23.8
chr14_+_918287 Show fit	0.03	ENSDART00000167066	CU462913.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr20_-_16972351 Show fit	0.03	ENSDART00000148312 ENSDART00000186702	si:ch73-74h11.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-74h11.1
chr23_-_35064785 Show fit	0.03	ENSDART00000172240	BX294434.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr24_-_32582378 Show fit	0.03	ENSDART00000066590	rdh12l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	retinol dehydrogenase 12, like
chr11_+_12811906 Show fit	0.03	ENSDART00000123445	rtel1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	regulator of telomere elongation helicase 1
chr23_+_26946744 Show fit	0.02	ENSDART00000115141	cacnb3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calcium channel, voltage-dependent, beta 3b
chr9_+_43799829 Show fit	0.02	ENSDART00000186240	ube2e3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast)
chr25_+_36312459 Show fit	0.02	ENSDART00000182484	CR354435.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr6_+_4255319 Show fit	0.02	ENSDART00000170351	nbeal1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neurobeachin-like 1
chr7_+_54642005 Show fit	0.02	ENSDART00000171864	fgf19 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fibroblast growth factor 19
chr21_-_33995710 Show fit	0.02	ENSDART00000100508 ENSDART00000179622	ebf1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	early B cell factor 1b
chr12_-_43685802 Show fit	0.02	ENSDART00000170723	zgc:112964 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:112964
chr16_+_32051572 Show fit	0.02	ENSDART00000039109	leng1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	leukocyte receptor cluster (LRC) member 1
chr5_-_22052852 Show fit	0.02	ENSDART00000002938	mtmr8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myotubularin related protein 8
chr8_-_20243389 Show fit	0.02	ENSDART00000184904	acer1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	alkaline ceramidase 1
chr21_-_21570134 Show fit	0.02	ENSDART00000174388	or133-4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	odorant receptor, family H, subfamily 133, member 4
chr8_-_29658171 Show fit	0.02	ENSDART00000147755	mpeg1.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	macrophage expressed 1, tandem duplicate 3
chr23_-_1348933 Show fit	0.01	ENSDART00000168981	CABZ01078120.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr8_+_22472584 Show fit	0.01	ENSDART00000138303	si:dkey-23c22.9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-23c22.9
chr14_-_30945515 Show fit	0.01	ENSDART00000161540	si:zfos-80g12.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:zfos-80g12.1
chr5_-_51619742 Show fit	0.01	ENSDART00000188537	otpb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	orthopedia homeobox b
chr7_+_34453185 Show fit	0.01	ENSDART00000173875 ENSDART00000173921 ENSDART00000173995	si:cabz01009626.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:cabz01009626.1
chr12_+_3078221 Show fit	0.01	ENSDART00000148835 ENSDART00000149427	sgca Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sarcoglycan, alpha
chr21_-_15200556 Show fit	0.01	ENSDART00000141809	sfswap Links NCBI UniProt ZFIN ENSEMBL Google Show fit	splicing factor SWAP
chr23_-_44965582 Show fit	0.01	ENSDART00000163367	tfr2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transferrin receptor 2
chr4_-_42408339 Show fit	0.00	ENSDART00000172612	si:ch211-59d8.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-59d8.3
chr23_-_24263474 Show fit	0.00	ENSDART00000160312	hspb7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	heat shock protein family, member 7 (cardiovascular)
chr1_-_50791280 Show fit	0.00	ENSDART00000181224	CABZ01031870.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr25_+_20272145 Show fit	0.00	ENSDART00000109605	si:dkey-219c3.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-219c3.2
chr15_-_25518084 Show fit	0.00	ENSDART00000158594	hif1al Links NCBI UniProt ZFIN ENSEMBL Google Show fit	hypoxia-inducible factor 1, alpha subunit, like

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.9	GO:0060046	binding of sperm to zona pellucida(GO:0007339) egg coat formation(GO:0035803) regulation of acrosome reaction(GO:0060046) positive regulation of acrosome reaction(GO:2000344)
0.0	0.1	GO:0042755	eating behavior(GO:0042755)
0.0	0.4	GO:0090481	pyrimidine nucleotide-sugar transport(GO:0015781) pyrimidine nucleotide-sugar transmembrane transport(GO:0090481)
0.0	0.1	GO:0036268	swimming(GO:0036268)
0.0	0.1	GO:0071869	response to monoamine(GO:0071867) response to catecholamine(GO:0071869) response to epinephrine(GO:0071871)
0.0	0.1	GO:0034497	protein localization to pre-autophagosomal structure(GO:0034497)
0.0	0.2	GO:0036444	calcium ion transmembrane import into mitochondrion(GO:0036444)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0048500	signal recognition particle, endoplasmic reticulum targeting(GO:0005786) signal recognition particle(GO:0048500)
0.0	0.1	GO:0034045	pre-autophagosomal structure membrane(GO:0034045)
0.0	0.1	GO:1990923	PET complex(GO:1990923)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.7	GO:0035804	structural constituent of egg coat(GO:0035804)
0.0	0.1	GO:0003994	aconitate hydratase activity(GO:0003994)
0.0	0.4	GO:0005459	UDP-galactose transmembrane transporter activity(GO:0005459)
0.0	0.2	GO:0015288	porin activity(GO:0015288)
0.0	0.1	GO:0030942	endoplasmic reticulum signal peptide binding(GO:0030942)
0.0	0.2	GO:0032190	acrosin binding(GO:0032190)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	PID TCR CALCIUM PATHWAY	Calcium signaling in the CD4+ TCR pathway