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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for nfic

Z-value: 0.09

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Transcription factors associated with nfic

Gene Symbol Gene ID Gene Info
ENSDARG00000043210 nuclear factor I/C

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
nficdr11_v1_chr8_+_20679759_20679759-0.626.0e-03Click!

Activity profile of nfic motif

Sorted Z-values of nfic motif

Promoter Log-likelihood Transcript Gene Gene Info
chr8_-_19467011 0.17 ENSDART00000162010
zgc:92140
chr2_-_21167652 0.16 ENSDART00000185792
bmi1 polycomb ring finger oncogene 1b
chr25_-_29074064 0.14 ENSDART00000165603
AT rich interactive domain 3B (BRIGHT-like)
chr16_-_48428035 0.14 ENSDART00000190554
RAD21 cohesin complex component a
chr20_+_48739154 0.13 ENSDART00000100262
zgc:110348
chr8_-_25033681 0.12 ENSDART00000003493
nuclear transcription factor Y, alpha, like
chr25_-_36261836 0.12 ENSDART00000179411
dihydrouridine synthase 2
chr19_-_33996277 0.12 ENSDART00000159384
engulfment and cell motility 1 (ced-12 homolog, C. elegans)
chr3_-_43646733 0.11 ENSDART00000180959
axin 1
chr6_-_6254432 0.11 ENSDART00000081952
reticulon 4a
chr12_-_35386910 0.11 ENSDART00000153453
calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma 1
chr21_+_38089036 0.10 ENSDART00000147219
Kruppel-like factor 8
chr11_-_24538852 0.10 ENSDART00000171004
ENSDART00000181039
pleckstrin homology domain containing, family G (with RhoGef domain) member 5a
chr23_-_26227805 0.09 ENSDART00000158082

chr2_-_40889465 0.09 ENSDART00000192631
ENSDART00000180824
UDP-glucose glycoprotein glucosyltransferase 1
chr14_+_21820034 0.08 ENSDART00000122739
C-terminal binding protein 1
chr8_+_9699111 0.08 ENSDART00000111853
GRIP1 associated protein 1
chr15_-_20745513 0.08 ENSDART00000187438
tyrosylprotein sulfotransferase 1
chr6_+_19933763 0.08 ENSDART00000166192
phosphoinositide-3-kinase, regulatory subunit 5
chr8_+_44623540 0.07 ENSDART00000141513
G protein-coupled receptor kinase 5 like
chr19_+_7636941 0.07 ENSDART00000081611
ENSDART00000163805
ENSDART00000112404
cingulin b
chr19_-_5332784 0.07 ENSDART00000010373
keratin, type 1, gene 19d
chr10_-_40939706 0.07 ENSDART00000059795
ENSDART00000190510
bone morphogenetic protein 1b
chr1_+_35194454 0.07 ENSDART00000165389
sc:d189
chr13_+_18371208 0.06 ENSDART00000138172
cell division cycle and apoptosis regulator 1
chr8_-_44223899 0.06 ENSDART00000143020
syntaxin 2b
chr10_-_40939303 0.06 ENSDART00000134295
bone morphogenetic protein 1b
chr7_+_31051603 0.06 ENSDART00000108721
tight junction protein 1a
chr16_+_33143503 0.06 ENSDART00000058471
ENSDART00000179385
rhomboid, veinlet-like 2 (Drosophila)
chr8_-_44223473 0.06 ENSDART00000098525
syntaxin 2b
chr8_-_1266181 0.06 ENSDART00000148654
ENSDART00000149924
cell division cycle 14B
chr13_+_22731356 0.06 ENSDART00000133064
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)
chr20_-_34069956 0.06 ENSDART00000017941
translocated promoter region b, nuclear basket protein
chr16_+_21426524 0.06 ENSDART00000182869
gasdermin Eb
chr15_+_24749985 0.06 ENSDART00000146107
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 1
chr4_+_12292274 0.06 ENSDART00000061070
ENSDART00000150786
makorin, ring finger protein, 1
chr19_+_14109348 0.06 ENSDART00000159015
zgc:175136
chr23_-_20175674 0.06 ENSDART00000112840
ENSDART00000189562
ubiquitin specific peptidase 19
chr20_+_9474841 0.05 ENSDART00000053847
RAD51 paralog B
chr20_+_54333774 0.05 ENSDART00000144633
CLOCK-interacting pacemaker b
chr9_-_41323746 0.05 ENSDART00000140564
glutaminase b
chr6_+_7533601 0.05 ENSDART00000057823
proliferation-associated 2G4, a
chr20_-_3390406 0.05 ENSDART00000136987
REV3-like, polymerase (DNA directed), zeta, catalytic subunit
chr7_+_38962459 0.05 ENSDART00000173851
diacylglycerol kinase, zeta a
chr1_+_28089703 0.05 ENSDART00000166989
PC4 and SFRS1 interacting protein 1a
chr5_-_37044262 0.05 ENSDART00000166670
si:dkeyp-110c7.8
chr16_+_35401543 0.05 ENSDART00000171608
RAB42, member RAS oncogene family
chr5_-_54772982 0.04 ENSDART00000122829
phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
chr11_-_17755444 0.04 ENSDART00000154627
EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase
chr3_-_38777553 0.04 ENSDART00000193045
zinc finger protein 281a
chr7_-_28647959 0.04 ENSDART00000150148
solute carrier family 7 (amino acid transporter light chain, y+L system), member 6
chr7_+_36898850 0.04 ENSDART00000113342
TOX high mobility group box family member 3
chr3_-_15667713 0.04 ENSDART00000026658
zgc:66474
chr12_+_48511605 0.04 ENSDART00000168389
Rho GTPase activating protein 44
chr22_-_29083070 0.04 ENSDART00000104812
ENSDART00000172576
chromobox homolog 6a
chr18_-_42313798 0.04 ENSDART00000098639
contactin 5
chr16_+_30604387 0.04 ENSDART00000058785
family with sequence similarity 210, member Ab
chr8_-_25566347 0.04 ENSDART00000138289
ENSDART00000078022
phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1
chr3_-_33934788 0.03 ENSDART00000151411
general transcription factor IIF, polypeptide 1
chr5_-_32338866 0.03 ENSDART00000017956
ENSDART00000047670
Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
chr7_+_30725473 0.03 ENSDART00000085716
myotubularin related protein 10
chr19_+_40379771 0.03 ENSDART00000017917
ENSDART00000110699
VPS50 EARP/GARPII complex subunit
VPS50 EARP/GARPII complex subunit
chr25_+_2993855 0.03 ENSDART00000163009
neogenin 1b
chr8_-_31053872 0.03 ENSDART00000109885
small nuclear ribonucleoprotein 200 (U5)
chr21_-_22681534 0.03 ENSDART00000159233
grass carp reovirus (GCRV)-induced gene 2f
chr8_-_16515127 0.03 ENSDART00000146469
ENSDART00000132681
tetratricopeptide repeat domain 39A
chr10_-_29827000 0.03 ENSDART00000131418
ZPR1 zinc finger
chr2_-_38114370 0.03 ENSDART00000131837
chromodomain helicase DNA binding protein 8
chr9_-_32142311 0.03 ENSDART00000142768
ankyrin repeat domain 44
chr12_+_30653047 0.03 ENSDART00000148562
thrombospondin 2b
chr7_+_36898622 0.03 ENSDART00000190773
TOX high mobility group box family member 3
chr3_-_37681824 0.03 ENSDART00000185858
G patch domain containing 8
chr14_-_25444774 0.03 ENSDART00000183448
solute carrier family 26 (anion exchanger), member 2
chr18_+_9493720 0.03 ENSDART00000053125
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E
chr3_-_61385117 0.02 ENSDART00000170164
zinc finger protein 1028
chr10_-_1718395 0.02 ENSDART00000137620
si:ch73-46j18.5
chr6_-_39199070 0.02 ENSDART00000131793
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1b
chr5_+_68826514 0.02 ENSDART00000061406
ubiquitin specific peptidase 39
chr6_-_35032792 0.02 ENSDART00000168256
discoidin domain receptor tyrosine kinase 2a
chr21_+_10866421 0.02 ENSDART00000137858
alpha-kinase 2
chr7_+_37377335 0.02 ENSDART00000111842
spalt-like transcription factor 1a
chr23_+_21978584 0.02 ENSDART00000145172
eukaryotic translation initiation factor 4 gamma, 3b
chr24_-_35707552 0.02 ENSDART00000165199
microtubule-associated protein, RP/EB family, member 2
chr17_+_28683574 0.02 ENSDART00000152000
HECT domain containing 1
chr17_-_50050453 0.02 ENSDART00000182057
zgc:100951
chr5_+_37517800 0.02 ENSDART00000048107
Danio rerio latent transforming growth factor beta binding protein 3 (ltbp3), mRNA.
chr4_+_30718997 0.02 ENSDART00000190901

chr25_+_4660639 0.02 ENSDART00000130299
DEAF1 transcription factor
chr10_+_36345176 0.02 ENSDART00000099397
odorant receptor, family C, subfamily 105, member 1
chr3_-_40275096 0.02 ENSDART00000141578
serine hydroxymethyltransferase 1 (soluble)
chr6_+_56076595 0.02 ENSDART00000169747
replication termination factor 2 domain containing 1
chr14_+_30775066 0.02 ENSDART00000139975
ENSDART00000144921
atlastin 3
chr20_+_23960525 0.01 ENSDART00000042123
connexin 52.6
chr5_+_23211938 0.01 ENSDART00000090102
two pore segment channel 1
chr5_-_67629263 0.01 ENSDART00000133753
zinc finger and BTB domain containing 20
chr19_-_9786914 0.01 ENSDART00000181669
si:dkey-14o18.2
chr16_-_43041324 0.01 ENSDART00000155445
ENSDART00000156836
ENSDART00000154945
si:dkey-7j14.6
chr8_-_36399884 0.01 ENSDART00000108538
si:zfos-2070c2.3
chr17_-_35352690 0.01 ENSDART00000016053
ring finger protein 144aa
chr22_-_15693085 0.01 ENSDART00000141861
si:ch1073-396h14.1
chr13_-_22774491 0.01 ENSDART00000189320
si:ch211-150i13.1
chr20_-_25486384 0.01 ENSDART00000141340
si:dkey-183n20.15
chr19_+_9786722 0.01 ENSDART00000138310
calcium channel, voltage-dependent, gamma subunit 6a
chr1_+_4101741 0.01 ENSDART00000163793
SLIT and NTRK-like family, member 6
chr10_+_40684758 0.01 ENSDART00000133648
trace amine associated receptor 19h
chr2_+_52049239 0.01 ENSDART00000036813
coiled-coil domain containing 94
chr7_+_52135791 0.01 ENSDART00000098705
cytochrome P450, family 2, subfamily X, polypeptide 12
chr23_-_20363261 0.01 ENSDART00000054651
si:rp71-17i16.5
chr15_-_31508221 0.01 ENSDART00000121464
si:dkey-1m11.5
chr4_+_74131530 0.01 ENSDART00000174125

chr1_-_28089557 0.01 ENSDART00000161024
ENSDART00000167875
small nuclear RNA activating complex, polypeptide 3
chr13_+_33651416 0.01 ENSDART00000180221

chr21_-_34658266 0.01 ENSDART00000023038
dachshund a
chr17_+_5846202 0.01 ENSDART00000189713
fibronectin type III domain containing 4b
chr2_-_25159309 0.01 ENSDART00000137290
si:dkey-223d7.6
chr5_-_37935607 0.01 ENSDART00000141233
ENSDART00000084868
ENSDART00000125857
sodium channel, voltage-gated, type IV, beta b
chr11_-_43948885 0.01 ENSDART00000164522

chr5_+_55225497 0.01 ENSDART00000144087
transmembrane channel-like 2a
chr21_-_22678195 0.01 ENSDART00000171231
grass carp reovirus (GCRV)-induced gene 2g
chr21_+_43253538 0.01 ENSDART00000179940
ENSDART00000164806
ENSDART00000147026
shroom family member 1
chr13_+_40635844 0.01 ENSDART00000137310
heparanase 2
chr8_-_14375890 0.01 ENSDART00000090306
xenotropic and polytropic retrovirus receptor 1a
chr15_-_18091157 0.01 ENSDART00000153848
pleckstrin homology-like domain, family B, member 1b
chr20_-_8110672 0.01 ENSDART00000113993
si:ch211-232i5.1
chr22_+_2623006 0.01 ENSDART00000176556
si:ch73-92e7.4
chr7_+_27898091 0.01 ENSDART00000186451
ENSDART00000173510
tubby bipartite transcription factor
chr7_+_52122224 0.01 ENSDART00000174268
cytochrome P450, family 2, subfamily X, polypeptide 12
chr22_+_2143107 0.01 ENSDART00000172339
ENSDART00000161280
ENSDART00000163671
ENSDART00000172090
ENSDART00000163573
zinc finger protein 1164
chr21_+_11865972 0.00 ENSDART00000081676
ubiquitin associated protein 1
chr3_+_22905341 0.00 ENSDART00000111435
histone deacetylase 5
chr11_+_14284866 0.00 ENSDART00000163729
si:ch211-262i1.3
chr20_-_26588736 0.00 ENSDART00000134337
exocyst complex component 2
chr22_-_7129631 0.00 ENSDART00000171359
acid-sensing (proton-gated) ion channel 1b
chr22_+_2144278 0.00 ENSDART00000162173
ENSDART00000159914
ENSDART00000160192
zinc finger protein 1164
chr15_-_18200358 0.00 ENSDART00000158569
si:ch211-247l8.8
chr4_+_1283068 0.00 ENSDART00000167233
cholinergic receptor, muscarinic 2a
chr18_+_33818577 0.00 ENSDART00000131788
olfactory receptor C family, q19
chr7_+_9008372 0.00 ENSDART00000144897

chr8_+_43852743 0.00 ENSDART00000186485

chr3_+_50602866 0.00 ENSDART00000190069
ENSDART00000153921
gsg1-like 2a
chr10_-_43844537 0.00 ENSDART00000114208
toll-like receptor 8b
chr4_-_75899294 0.00 ENSDART00000157887
si:dkey-261j11.3
chr9_+_12934536 0.00 ENSDART00000134484
si:dkey-230p4.1
chr20_+_51464670 0.00 ENSDART00000150110
thrombomodulin
chr9_-_46382637 0.00 ENSDART00000085738
lactase
chr4_+_59589201 0.00 ENSDART00000150576
si:dkey-4e4.1
chr25_-_17367578 0.00 ENSDART00000064591
ENSDART00000110692
cytochrome P450, family 2, subfamily X, polypeptide 6
chr7_+_73447724 0.00 ENSDART00000040786
cerebellin 6

Network of associatons between targets according to the STRING database.

First level regulatory network of nfic

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0090244 Wnt signaling pathway involved in somitogenesis(GO:0090244)
0.0 0.1 GO:0003173 ventriculo bulbo valve development(GO:0003173)
0.0 0.1 GO:0060231 mesenchymal to epithelial transition(GO:0060231)
0.0 0.1 GO:0099563 modification of synaptic structure(GO:0099563)
0.0 0.1 GO:0042754 negative regulation of circadian rhythm(GO:0042754)
0.0 0.2 GO:0036353 histone H2A-K119 monoubiquitination(GO:0036353)
0.0 0.1 GO:0006478 protein sulfation(GO:0006477) peptidyl-tyrosine sulfation(GO:0006478)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0000798 nuclear cohesin complex(GO:0000798) mitotic cohesin complex(GO:0030892) nuclear mitotic cohesin complex(GO:0034990) nuclear meiotic cohesin complex(GO:0034991)
0.0 0.1 GO:0030877 beta-catenin destruction complex(GO:0030877)
0.0 0.1 GO:0098837 postsynaptic recycling endosome(GO:0098837)
0.0 0.1 GO:0032045 guanyl-nucleotide exchange factor complex(GO:0032045)
0.0 0.0 GO:1990745 EARP complex(GO:1990745)
0.0 0.1 GO:0016602 CCAAT-binding factor complex(GO:0016602)
0.0 0.1 GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex(GO:0033063)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0017150 tRNA dihydrouridine synthase activity(GO:0017150)
0.0 0.1 GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity(GO:0003980)
0.0 0.1 GO:0008476 protein-tyrosine sulfotransferase activity(GO:0008476)