PRJNA438478: RNAseq of wild type zebrafish germline
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSDARG00000018109 | v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog Ga | |
ENSDARG00000028957 | v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F | |
ENSDARG00000100097 | v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog Gb | |
ENSDARG00000111050 | v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
maff | dr11_v1_chr12_-_19346678_19346678 | 0.93 | 1.9e-08 | Click! |
mafga | dr11_v1_chr3_-_55404985_55404985 | 0.70 | 1.3e-03 | Click! |
mafgb | dr11_v1_chr11_+_45299447_45299447 | -0.58 | 1.1e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr14_+_81919 Show fit | 3.40 |
ENSDART00000171444
|
stromal antigen 3 |
|
chr6_+_120181 Show fit | 2.83 |
ENSDART00000151209
ENSDART00000185930 |
cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) |
|
chr2_-_32505091 Show fit | 2.56 |
ENSDART00000141884
ENSDART00000056639 |
Fas apoptotic inhibitory molecule 2a |
|
chr16_-_28727763 Show fit | 2.52 |
ENSDART00000149575
|
DC-STAMP domain containing 1 |
|
chr12_-_7607114 Show fit | 2.46 |
ENSDART00000158095
|
solute carrier family 16, member 9b |
|
chr13_+_7520596 Show fit | 2.43 |
ENSDART00000145298
|
cyclic nucleotide-gated potassium channel |
|
chr20_-_43459761 Show fit | 2.40 |
ENSDART00000137422
|
Pim proto-oncogene, serine/threonine kinase, related 133 |
|
chr9_+_48219111 Show fit | 2.33 |
ENSDART00000111225
ENSDART00000145972 |
coiled-coil domain containing 173 |
|
chr3_+_13929860 Show fit | 2.25 |
ENSDART00000164179
|
synaptonemal complex central element protein 2 |
|
chr1_-_12068520 Show fit | 2.23 |
ENSDART00000152392
|
si:dkey-58j15.10 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 9.7 | GO:0046777 | protein autophosphorylation(GO:0046777) |
0.3 | 3.4 | GO:1901317 | regulation of sperm motility(GO:1901317) |
0.1 | 3.4 | GO:0007062 | sister chromatid cohesion(GO:0007062) |
0.0 | 2.8 | GO:0019722 | calcium-mediated signaling(GO:0019722) |
0.0 | 2.6 | GO:0009612 | response to mechanical stimulus(GO:0009612) |
0.0 | 2.4 | GO:0015718 | monocarboxylic acid transport(GO:0015718) |
0.1 | 2.3 | GO:0015671 | oxygen transport(GO:0015671) |
0.5 | 2.2 | GO:0009202 | purine deoxyribonucleoside diphosphate metabolic process(GO:0009182) deoxyribonucleoside triphosphate biosynthetic process(GO:0009202) dGDP metabolic process(GO:0046066) |
0.1 | 2.2 | GO:0070193 | synaptonemal complex assembly(GO:0007130) synaptonemal complex organization(GO:0070193) |
0.1 | 2.1 | GO:0051127 | positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.1 | GO:0009897 | external side of plasma membrane(GO:0009897) |
0.1 | 3.4 | GO:0008278 | cohesin complex(GO:0008278) |
0.1 | 2.6 | GO:0005666 | DNA-directed RNA polymerase III complex(GO:0005666) |
0.2 | 2.3 | GO:0031838 | haptoglobin-hemoglobin complex(GO:0031838) |
0.0 | 2.3 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
0.4 | 2.2 | GO:0000801 | central element(GO:0000801) |
0.2 | 2.2 | GO:0030122 | AP-2 adaptor complex(GO:0030122) |
0.0 | 2.2 | GO:0008287 | protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293) |
0.1 | 2.1 | GO:0031209 | SCAR complex(GO:0031209) |
0.0 | 1.9 | GO:0098852 | lysosomal membrane(GO:0005765) lytic vacuole membrane(GO:0098852) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.5 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.1 | 2.8 | GO:0019957 | C-C chemokine binding(GO:0019957) |
0.0 | 2.5 | GO:0008028 | monocarboxylic acid transmembrane transporter activity(GO:0008028) |
0.0 | 2.4 | GO:0005249 | voltage-gated potassium channel activity(GO:0005249) |
0.2 | 2.3 | GO:0031720 | haptoglobin binding(GO:0031720) |
0.2 | 2.2 | GO:0004017 | adenylate kinase activity(GO:0004017) |
0.2 | 2.1 | GO:0071933 | Arp2/3 complex binding(GO:0071933) |
0.6 | 1.8 | GO:0000293 | ferric-chelate reductase activity(GO:0000293) |
0.1 | 1.5 | GO:0010484 | H3 histone acetyltransferase activity(GO:0010484) histone acetyltransferase activity (H3-K23 specific)(GO:0043994) |
0.0 | 1.5 | GO:0005179 | hormone activity(GO:0005179) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.5 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.1 | 1.3 | ST GRANULE CELL SURVIVAL PATHWAY | Granule Cell Survival Pathway is a specific case of more general PAC1 Receptor Pathway. |
0.1 | 0.8 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
0.0 | 0.6 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
0.0 | 0.6 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 0.5 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 0.5 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 0.3 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.0 | 0.2 | ST G ALPHA S PATHWAY | G alpha s Pathway |
0.0 | 0.2 | PID REELIN PATHWAY | Reelin signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.7 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
0.1 | 2.8 | REACTOME G1 PHASE | Genes involved in G1 Phase |
0.1 | 2.0 | REACTOME METAL ION SLC TRANSPORTERS | Genes involved in Metal ion SLC transporters |
0.1 | 1.7 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
0.1 | 1.3 | REACTOME CHONDROITIN SULFATE BIOSYNTHESIS | Genes involved in Chondroitin sulfate biosynthesis |
0.1 | 1.2 | REACTOME REGULATION OF PYRUVATE DEHYDROGENASE PDH COMPLEX | Genes involved in Regulation of pyruvate dehydrogenase (PDH) complex |
0.0 | 1.2 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
0.1 | 1.0 | REACTOME PLATELET SENSITIZATION BY LDL | Genes involved in Platelet sensitization by LDL |
0.1 | 0.9 | REACTOME RNA POL I PROMOTER OPENING | Genes involved in RNA Polymerase I Promoter Opening |
0.0 | 0.8 | REACTOME CYTOCHROME P450 ARRANGED BY SUBSTRATE TYPE | Genes involved in Cytochrome P450 - arranged by substrate type |