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PRJNA438478: RNAseq of wild type zebrafish germline
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Results for jund_batf
Z-value: 1.23
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Transcription factors associated with jund_batf
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| batf | dr11_v1_chr20_+_46572550_46572550 | -0.96 | 2.2e-10 | Click! |
| jund | dr11_v1_chr2_-_56131312_56131312 | 0.66 | 2.7e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr16_-_13818061 Show fit | 5.19 |
ENSDART00000132982
ENSDART00000144856 |
leukocyte receptor cluster (LRC) member 9 |
|
| chr7_-_52963493 Show fit | 5.12 |
ENSDART00000052029
|
cocaine- and amphetamine-regulated transcript 3 |
|
| chr9_+_2499627 Show fit | 4.94 |
ENSDART00000160782
|
WAS/WASL interacting protein family, member 1a |
|
| chr24_+_13277573 Show fit | 4.75 |
ENSDART00000137886
|
si:ch211-171b20.3 |
|
| chr24_+_31361407 Show fit | 4.61 |
ENSDART00000162668
|
cAMP responsive element modulator b |
|
| chr6_+_7421898 Show fit | 4.38 |
ENSDART00000043946
|
coiled-coil domain containing 65 |
|
| chr3_+_24197934 Show fit | 4.02 |
ENSDART00000055609
|
activating transcription factor 4b |
|
| chr21_+_22845317 Show fit | 3.99 |
ENSDART00000065555
|
baculoviral IAP repeat containing 2 |
|
| chr20_+_2134816 Show fit | 3.97 |
ENSDART00000039249
|
l(3)mbt-like 3 (Drosophila) |
|
| chr22_+_16497670 Show fit | 3.97 |
ENSDART00000014330
|
immediate early response 5 |
Network of associatons between targets according to the STRING database.
First level regulatory network of jund_batf
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 10.9 | GO:0046777 | protein autophosphorylation(GO:0046777) |
| 0.6 | 5.1 | GO:0008343 | adult feeding behavior(GO:0008343) |
| 0.1 | 4.9 | GO:0030048 | actin filament-based movement(GO:0030048) |
| 0.5 | 4.4 | GO:0003352 | regulation of cilium movement(GO:0003352) |
| 1.0 | 4.0 | GO:0060546 | negative regulation of necroptotic process(GO:0060546) negative regulation of necrotic cell death(GO:0060547) |
| 1.3 | 3.8 | GO:0043576 | respiratory gaseous exchange(GO:0007585) regulation of respiratory gaseous exchange(GO:0043576) |
| 0.1 | 3.4 | GO:0048247 | lymphocyte chemotaxis(GO:0048247) |
| 0.0 | 3.0 | GO:0007596 | blood coagulation(GO:0007596) |
| 0.3 | 2.6 | GO:0015810 | acidic amino acid transport(GO:0015800) aspartate transport(GO:0015810) L-glutamate transport(GO:0015813) malate-aspartate shuttle(GO:0043490) |
| 0.7 | 2.1 | GO:0061341 | non-canonical Wnt signaling pathway involved in heart development(GO:0061341) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 8.6 | GO:1990589 | ATF4-CREB1 transcription factor complex(GO:1990589) |
| 0.2 | 4.4 | GO:0005858 | axonemal dynein complex(GO:0005858) |
| 0.3 | 2.8 | GO:0008180 | COP9 signalosome(GO:0008180) |
| 0.1 | 1.9 | GO:0005666 | DNA-directed RNA polymerase III complex(GO:0005666) |
| 0.1 | 1.3 | GO:0005885 | Arp2/3 protein complex(GO:0005885) |
| 0.0 | 1.2 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
| 0.1 | 1.0 | GO:0042613 | MHC class II protein complex(GO:0042613) |
| 0.1 | 1.0 | GO:0042627 | chylomicron(GO:0042627) |
| 0.0 | 1.0 | GO:0043195 | terminal bouton(GO:0043195) |
| 0.0 | 0.9 | GO:0005839 | proteasome core complex(GO:0005839) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 5.4 | GO:0005184 | neuropeptide hormone activity(GO:0005184) |
| 0.0 | 4.3 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.3 | 4.0 | GO:0043028 | cysteine-type endopeptidase inhibitor activity involved in apoptotic process(GO:0043027) cysteine-type endopeptidase regulator activity involved in apoptotic process(GO:0043028) |
| 0.6 | 3.8 | GO:0004392 | heme oxygenase (decyclizing) activity(GO:0004392) |
| 0.1 | 3.4 | GO:0048020 | CCR chemokine receptor binding(GO:0048020) |
| 0.0 | 3.3 | GO:0042393 | histone binding(GO:0042393) |
| 0.0 | 3.1 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
| 0.2 | 2.6 | GO:0015183 | L-aspartate transmembrane transporter activity(GO:0015183) |
| 0.1 | 2.1 | GO:0042813 | Wnt-activated receptor activity(GO:0042813) |
| 0.0 | 2.0 | GO:0004843 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) ubiquitinyl hydrolase activity(GO:0101005) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 4.0 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.2 | 3.0 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
| 0.1 | 2.1 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
| 0.0 | 1.7 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.0 | 1.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.0 | 1.3 | PID RAC1 PATHWAY | RAC1 signaling pathway |
| 0.0 | 1.1 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.0 | 0.8 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
| 0.0 | 0.5 | ST GRANULE CELL SURVIVAL PATHWAY | Granule Cell Survival Pathway is a specific case of more general PAC1 Receptor Pathway. |
| 0.0 | 0.5 | PID PTP1B PATHWAY | Signaling events mediated by PTP1B |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 4.4 | REACTOME APOPTOTIC CLEAVAGE OF CELLULAR PROTEINS | Genes involved in Apoptotic cleavage of cellular proteins |
| 0.2 | 3.0 | REACTOME COMMON PATHWAY | Genes involved in Common Pathway |
| 0.1 | 1.8 | REACTOME IRON UPTAKE AND TRANSPORT | Genes involved in Iron uptake and transport |
| 0.0 | 1.7 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
| 0.1 | 1.2 | REACTOME INHIBITION OF INSULIN SECRETION BY ADRENALINE NORADRENALINE | Genes involved in Inhibition of Insulin Secretion by Adrenaline/Noradrenaline |
| 0.0 | 0.9 | REACTOME CROSS PRESENTATION OF SOLUBLE EXOGENOUS ANTIGENS ENDOSOMES | Genes involved in Cross-presentation of soluble exogenous antigens (endosomes) |
| 0.1 | 0.8 | REACTOME ERKS ARE INACTIVATED | Genes involved in ERKs are inactivated |
| 0.0 | 0.8 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |
| 0.0 | 0.8 | REACTOME ION TRANSPORT BY P TYPE ATPASES | Genes involved in Ion transport by P-type ATPases |
| 0.0 | 0.7 | REACTOME ACYL CHAIN REMODELLING OF PC | Genes involved in Acyl chain remodelling of PC |