ISMARA results: jdp2a

Project

PRJNA438478: RNAseq of wild type zebrafish germline

Navigation

Downloads

Results for jdp2a

Z-value: 0.45

Motif logo

Transcription factors associated with jdp2a

Gene Symbol	Gene ID	Gene Info
jdp2a NCBI UniProt	ENSDARG00000040137	Jun dimerization protein 2a

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
jdp2a	dr11_v1_chr17_-_50220228_50220228	-0.03	9.0e-01	Click!

Activity profile of jdp2a motif

Sorted Z-values of jdp2a motif

Top targets:

Search:

Show entries

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr8_-_34402839 Show fit	1.75	ENSDART00000180173 ENSDART00000191588 ENSDART00000186376	gapvd1 NCBI UniProt Show fit	GTPase activating protein and VPS9 domains 1
chr25_+_30196039 Show fit	1.21	ENSDART00000005299	hsd17b12a NCBI UniProt Show fit	hydroxysteroid (17-beta) dehydrogenase 12a
chr5_+_34549845 Show fit	1.19	ENSDART00000139317	aif1l NCBI UniProt Show fit	allograft inflammatory factor 1-like
chr15_+_25489406 Show fit	1.18	ENSDART00000162482	zgc:152863 NCBI UniProt Show fit	zgc:152863
chr21_+_13233377 Show fit	1.10	ENSDART00000142569	specc1lb NCBI UniProt Show fit	sperm antigen with calponin homology and coiled-coil domains 1-like b
chr7_+_44802353 Show fit	1.09	ENSDART00000066380	ca7 NCBI UniProt Show fit	carbonic anhydrase VII
chr9_+_33154841 Show fit	1.07	ENSDART00000132465	dopey2 NCBI UniProt Show fit	dopey family member 2
chr2_-_23391266 Show fit	1.04	ENSDART00000159048	ivns1abpb NCBI UniProt Show fit	influenza virus NS1A binding protein b
chr2_-_32738535 Show fit	1.02	ENSDART00000135293	nrbp2a NCBI UniProt Show fit	nuclear receptor binding protein 2a
chr20_+_28364742 Show fit	0.93	ENSDART00000103355	rhov NCBI UniProt Show fit	ras homolog family member V

Showing 1 to 10 of 200 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of jdp2a

View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	1.7	GO:0090279	regulation of calcium ion import(GO:0090279)
0.1	1.3	GO:0048096	chromatin-mediated maintenance of transcription(GO:0048096)
0.0	1.3	GO:0051904	melanosome transport(GO:0032402) pigment granule transport(GO:0051904)
0.2	1.2	GO:0006703	estrogen biosynthetic process(GO:0006703)
0.1	1.2	GO:0097178	ruffle assembly(GO:0097178)
0.4	1.1	GO:0097095	frontonasal suture morphogenesis(GO:0097095)
0.0	1.1	GO:0006637	acyl-CoA metabolic process(GO:0006637) thioester metabolic process(GO:0035383)
0.1	1.0	GO:0045905	positive regulation of translational elongation(GO:0045901) positive regulation of translational termination(GO:0045905)
0.0	1.0	GO:0043297	apical junction assembly(GO:0043297) bicellular tight junction assembly(GO:0070830)
0.3	0.9	GO:0071896	protein localization to adherens junction(GO:0071896)

Showing 1 to 10 of 48 entries

Gene overrepresentation in cellular component category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	1.8	GO:0005923	bicellular tight junction(GO:0005923) occluding junction(GO:0070160)
0.5	1.4	GO:0030289	protein phosphatase 4 complex(GO:0030289)
0.0	1.2	GO:0032587	ruffle membrane(GO:0032587)
0.0	1.1	GO:0005921	gap junction(GO:0005921)
0.0	1.0	GO:0005643	nuclear pore(GO:0005643)
0.0	0.9	GO:0030119	AP-type membrane coat adaptor complex(GO:0030119)
0.0	0.7	GO:0033116	endoplasmic reticulum-Golgi intermediate compartment membrane(GO:0033116)
0.0	0.7	GO:0080008	Cul4-RING E3 ubiquitin ligase complex(GO:0080008)
0.0	0.6	GO:0035098	ESC/E(Z) complex(GO:0035098)
0.1	0.5	GO:0044326	dendritic spine neck(GO:0044326) dendritic filopodium(GO:1902737)

Showing 1 to 10 of 17 entries

Gene overrepresentation in molecular function category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	1.5	GO:0004435	phosphatidylinositol phospholipase C activity(GO:0004435) phospholipase C activity(GO:0004629)
0.0	1.4	GO:0019888	protein phosphatase regulator activity(GO:0019888)
0.2	1.3	GO:0004045	aminoacyl-tRNA hydrolase activity(GO:0004045)
0.2	1.2	GO:0004303	estradiol 17-beta-dehydrogenase activity(GO:0004303)
0.0	1.1	GO:0047617	acyl-CoA hydrolase activity(GO:0047617)
0.0	1.1	GO:0004089	carbonate dehydratase activity(GO:0004089)
0.0	1.0	GO:0043539	protein serine/threonine kinase activator activity(GO:0043539)
0.0	1.0	GO:0003746	translation elongation factor activity(GO:0003746)
0.0	0.8	GO:0048306	calcium-dependent protein binding(GO:0048306)
0.0	0.8	GO:0004683	calmodulin-dependent protein kinase activity(GO:0004683)

Showing 1 to 10 of 30 entries

Gene overrepresentation in curated gene sets: canonical pathways category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	1.7	PID IL8 CXCR1 PATHWAY	IL8- and CXCR1-mediated signaling events
0.0	0.8	SIG CHEMOTAXIS	Genes related to chemotaxis
0.0	0.7	PID ARF 3PATHWAY	Arf1 pathway
0.1	0.6	PID TCR JNK PATHWAY	JNK signaling in the CD4+ TCR pathway
0.0	0.6	PID RAS PATHWAY	Regulation of Ras family activation
0.0	0.5	PID TOLL ENDOGENOUS PATHWAY	Endogenous TLR signaling
0.0	0.3	PID HIF1A PATHWAY	Hypoxic and oxygen homeostasis regulation of HIF-1-alpha

Showing 1 to 7 of 7 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	1.7	REACTOME REGULATION OF INSULIN SECRETION BY ACETYLCHOLINE	Genes involved in Regulation of Insulin Secretion by Acetylcholine
0.0	1.2	REACTOME SIGNALING BY RHO GTPASES	Genes involved in Signaling by Rho GTPases
0.1	1.1	REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE	Genes involved in Reversible Hydration of Carbon Dioxide
0.1	1.0	REACTOME REGULATION OF AMPK ACTIVITY VIA LKB1	Genes involved in Regulation of AMPK activity via LKB1
0.0	1.0	REACTOME PTM GAMMA CARBOXYLATION HYPUSINE FORMATION AND ARYLSULFATASE ACTIVATION	Genes involved in PTM: gamma carboxylation, hypusine formation and arylsulfatase activation
0.0	0.9	REACTOME PRE NOTCH TRANSCRIPTION AND TRANSLATION	Genes involved in Pre-NOTCH Transcription and Translation
0.0	0.8	REACTOME SIGNALING BY HIPPO	Genes involved in Signaling by Hippo
0.1	0.7	REACTOME COPI MEDIATED TRANSPORT	Genes involved in COPI Mediated Transport
0.0	0.7	REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS	Genes involved in Association of TriC/CCT with target proteins during biosynthesis
0.0	0.6	REACTOME TRAF6 MEDIATED NFKB ACTIVATION	Genes involved in TRAF6 mediated NF-kB activation

Showing 1 to 10 of 15 entries

Results for jdp2a

Z-value: 0.45

Motif logo

Transcription factors associated with jdp2a

Activity-expression correlation:

Activity profile of jdp2a motif

Sorted Z-values of jdp2a motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of jdp2a

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: canonical pathways category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: