PRJNA438478: RNAseq of wild type zebrafish germline
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
irf4a | dr11_v1_chr2_-_879800_879800 | 0.89 | 5.4e-07 | Click! |
irf4b | dr11_v1_chr20_+_26556174_26556174 | 0.71 | 8.9e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_-_27242498 Show fit | 2.74 |
ENSDART00000152609
ENSDART00000152170 |
si:dkey-11c5.11 |
|
chr14_-_30960470 Show fit | 2.72 |
ENSDART00000129989
|
si:ch211-191o15.6 |
|
chr19_-_7110617 Show fit | 2.45 |
ENSDART00000104838
|
proteasome subunit beta 8A |
|
chr14_+_33329761 Show fit | 2.22 |
ENSDART00000161138
|
sosondowah ankyrin repeat domain family d |
|
chr4_-_12795030 Show fit | 2.06 |
ENSDART00000150427
|
beta-2-microglobulin |
|
chr5_+_65157576 Show fit | 1.80 |
ENSDART00000159599
|
cilia and flagella associated protein 157 |
|
chr4_-_8611841 Show fit | 1.80 |
ENSDART00000067322
|
F-box and leucine-rich repeat protein 14b |
|
chr6_+_15762647 Show fit | 1.79 |
ENSDART00000127133
ENSDART00000128939 |
IQ motif containing with AAA domain 1 |
|
chr4_-_12795436 Show fit | 1.71 |
ENSDART00000131026
ENSDART00000075127 |
beta-2-microglobulin |
|
chr14_+_33329420 Show fit | 1.67 |
ENSDART00000171090
ENSDART00000164062 |
sosondowah ankyrin repeat domain family d |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 5.0 | GO:0045824 | negative regulation of innate immune response(GO:0045824) |
0.2 | 3.4 | GO:0098884 | postsynaptic neurotransmitter receptor internalization(GO:0098884) |
0.1 | 2.9 | GO:0051607 | defense response to virus(GO:0051607) |
0.2 | 2.0 | GO:0044805 | late nucleophagy(GO:0044805) |
0.1 | 2.0 | GO:0010499 | proteasomal ubiquitin-independent protein catabolic process(GO:0010499) |
0.3 | 1.8 | GO:0007288 | sperm axoneme assembly(GO:0007288) |
0.0 | 1.8 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146) |
0.0 | 1.6 | GO:0043044 | ATP-dependent chromatin remodeling(GO:0043044) |
0.0 | 1.4 | GO:0009612 | response to mechanical stimulus(GO:0009612) |
0.2 | 1.2 | GO:0098795 | mRNA cleavage involved in gene silencing by miRNA(GO:0035279) mRNA cleavage involved in gene silencing(GO:0098795) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 3.8 | GO:0042612 | MHC class I protein complex(GO:0042612) |
0.2 | 3.4 | GO:0098844 | postsynaptic endocytic zone membrane(GO:0098844) |
0.1 | 2.0 | GO:0005839 | proteasome core complex(GO:0005839) |
0.0 | 1.8 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
0.0 | 1.8 | GO:0036064 | ciliary basal body(GO:0036064) |
0.1 | 1.6 | GO:0031010 | ISWI-type complex(GO:0031010) |
0.1 | 1.6 | GO:0000407 | pre-autophagosomal structure(GO:0000407) |
0.1 | 1.2 | GO:0032391 | photoreceptor connecting cilium(GO:0032391) |
0.0 | 1.2 | GO:0043186 | P granule(GO:0043186) |
0.0 | 0.9 | GO:0000795 | synaptonemal complex(GO:0000795) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.8 | GO:0008017 | microtubule binding(GO:0008017) |
0.1 | 2.1 | GO:0070003 | threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003) |
0.2 | 1.6 | GO:0035242 | protein-arginine omega-N asymmetric methyltransferase activity(GO:0035242) |
0.4 | 1.5 | GO:0004694 | eukaryotic translation initiation factor 2alpha kinase activity(GO:0004694) |
0.4 | 1.2 | GO:0032574 | 5'-3' RNA helicase activity(GO:0032574) |
0.1 | 1.2 | GO:0004157 | dihydropyrimidinase activity(GO:0004157) |
0.1 | 1.2 | GO:0016724 | ferroxidase activity(GO:0004322) oxidoreductase activity, oxidizing metal ions, oxygen as acceptor(GO:0016724) |
0.0 | 1.0 | GO:0043176 | amine binding(GO:0043176) serotonin binding(GO:0051378) |
0.0 | 1.0 | GO:0003725 | double-stranded RNA binding(GO:0003725) |
0.1 | 0.9 | GO:0030983 | mismatched DNA binding(GO:0030983) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.5 | PID CD8 TCR DOWNSTREAM PATHWAY | Downstream signaling in naïve CD8+ T cells |
0.1 | 1.1 | PID IL27 PATHWAY | IL27-mediated signaling events |
0.1 | 0.8 | PID ALK2 PATHWAY | ALK2 signaling events |
0.0 | 0.8 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 0.7 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.1 | 0.6 | PID THROMBIN PAR4 PATHWAY | PAR4-mediated thrombin signaling events |
0.0 | 0.3 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 3.8 | REACTOME ENDOSOMAL VACUOLAR PATHWAY | Genes involved in Endosomal/Vacuolar pathway |
0.1 | 1.8 | REACTOME TRAF3 DEPENDENT IRF ACTIVATION PATHWAY | Genes involved in TRAF3-dependent IRF activation pathway |
0.1 | 1.4 | REACTOME TRAFFICKING AND PROCESSING OF ENDOSOMAL TLR | Genes involved in Trafficking and processing of endosomal TLR |
0.1 | 1.2 | REACTOME NEGATIVE REGULATORS OF RIG I MDA5 SIGNALING | Genes involved in Negative regulators of RIG-I/MDA5 signaling |
0.1 | 1.1 | REACTOME IL 6 SIGNALING | Genes involved in Interleukin-6 signaling |
0.2 | 1.0 | REACTOME SEROTONIN RECEPTORS | Genes involved in Serotonin receptors |
0.1 | 0.8 | REACTOME SIGNALING BY BMP | Genes involved in Signaling by BMP |
0.0 | 0.8 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
0.1 | 0.7 | REACTOME TRAF6 MEDIATED IRF7 ACTIVATION IN TLR7 8 OR 9 SIGNALING | Genes involved in TRAF6 mediated IRF7 activation in TLR7/8 or 9 signaling |
0.0 | 0.6 | REACTOME SEMA4D INDUCED CELL MIGRATION AND GROWTH CONE COLLAPSE | Genes involved in Sema4D induced cell migration and growth-cone collapse |