PRJNA438478: RNAseq of wild type zebrafish germline

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
hoxd3a Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000059280	homeobox D3a

Gene	Promoter	Pearson corr. coef.	P-value	Plot
hoxd3a	dr11_v1_chr9_-_1939232_1939232	0.48	4.2e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr20_-_7072487 Show fit	0.47	ENSDART00000145954	si:ch211-121a2.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-121a2.2
chr11_-_40728380 Show fit	0.41	ENSDART00000023745	ccdc114 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	coiled-coil domain containing 114
chr12_+_24952902 Show fit	0.36	ENSDART00000189086 ENSDART00000014868	calm3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calmodulin 3a (phosphorylase kinase, delta)
chr20_-_14925281 Show fit	0.31	ENSDART00000152641	dnm3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	dynamin 3a
chr20_-_14924858 Show fit	0.27	ENSDART00000047039	dnm3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	dynamin 3a
chr10_+_39084354 Show fit	0.23	ENSDART00000158245	si:ch73-1a9.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-1a9.3
chr16_+_5251768 Show fit	0.20	ENSDART00000144558	plecb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	plectin b
chr3_+_30500968 Show fit	0.17	ENSDART00000103447	si:dkey-13n23.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-13n23.3
chr10_+_6884627 Show fit	0.17	ENSDART00000125262 ENSDART00000121729 ENSDART00000105384	ddx4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
chr10_-_26744131 Show fit	0.17	ENSDART00000020096 ENSDART00000162710 ENSDART00000179853	fgf13b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fibroblast growth factor 13b
chr5_+_66353589 Show fit	0.16	ENSDART00000138246	si:ch211-261c8.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-261c8.5
chr6_-_57539141 Show fit	0.16	ENSDART00000156967	itcha Links NCBI UniProt ZFIN ENSEMBL Google Show fit	itchy E3 ubiquitin protein ligase a
chr6_+_3280939 Show fit	0.13	ENSDART00000151359	kdm4aa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lysine (K)-specific demethylase 4A, genome duplicate a
chr19_-_6988837 Show fit	0.13	ENSDART00000145741 ENSDART00000167640	znf384l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger protein 384 like
chr14_+_30762131 Show fit	0.12	ENSDART00000145039	si:ch211-145o7.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-145o7.3
chr13_-_31435137 Show fit	0.11	ENSDART00000057441	rtn1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	reticulon 1a
chr20_-_46362606 Show fit	0.11	ENSDART00000153087	bmf2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	BCL2 modifying factor 2
chr10_-_5847655 Show fit	0.11	ENSDART00000192773	ankrd55 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ankyrin repeat domain 55
chr20_+_539852 Show fit	0.11	ENSDART00000185994	dse Links NCBI UniProt ZFIN ENSEMBL Google Show fit	dermatan sulfate epimerase
chr18_+_3037998 Show fit	0.11	ENSDART00000185844 ENSDART00000162657	rps3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ribosomal protein S3
chr10_+_39091353 Show fit	0.11	ENSDART00000125986	si:ch73-1a9.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-1a9.4
chr7_-_48667056 Show fit	0.10	ENSDART00000006378	cdkn1ca Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cyclin-dependent kinase inhibitor 1Ca
chr19_-_27462720 Show fit	0.10	ENSDART00000135901	si:ch73-25f10.6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-25f10.6
chr5_+_30384554 Show fit	0.10	ENSDART00000135483	zgc:158412 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:158412
chr4_+_58576146 Show fit	0.09	ENSDART00000164911	si:ch211-212k5.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-212k5.4
chr6_+_41191482 Show fit	0.08	ENSDART00000000877	opn1mw3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	opsin 1 (cone pigments), medium-wave-sensitive, 3
chr9_-_21918963 Show fit	0.08	ENSDART00000090782	lmo7a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	LIM domain 7a
chr20_-_9095105 Show fit	0.08	ENSDART00000140792	oma1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	OMA1 zinc metallopeptidase
chr15_+_31899312 Show fit	0.08	ENSDART00000155315	frya Links NCBI UniProt ZFIN ENSEMBL Google Show fit	furry homolog a (Drosophila)
chr1_-_50859053 Show fit	0.08	ENSDART00000132779 ENSDART00000137648	si:dkeyp-123h10.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkeyp-123h10.2
chr14_-_2933185 Show fit	0.07	ENSDART00000161677 ENSDART00000162446 ENSDART00000109378	si:dkey-201i24.6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-201i24.6
chr8_+_17078692 Show fit	0.07	ENSDART00000023206	plk2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	polo-like kinase 2b (Drosophila)
chr8_-_31107537 Show fit	0.07	ENSDART00000098925	vgll4l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	vestigial like 4 like
chr15_+_5360407 Show fit	0.06	ENSDART00000110420	or112-1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	odorant receptor, family A, subfamily 112, member 1
chr15_+_15856178 Show fit	0.06	ENSDART00000080338	dusp14 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	dual specificity phosphatase 14
chr8_+_41037541 Show fit	0.06	ENSDART00000129344	gpat2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glycerol-3-phosphate acyltransferase 2, mitochondrial
chr2_+_54327160 Show fit	0.06	ENSDART00000182320	LO018508.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr10_+_11355841 Show fit	0.05	ENSDART00000193067 ENSDART00000064215	cops4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)
chr8_-_39822917 Show fit	0.05	ENSDART00000067843	zgc:162025 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:162025
chr4_+_47636303 Show fit	0.05	ENSDART00000167272 ENSDART00000166961	BX324142.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr18_+_17827149 Show fit	0.05	ENSDART00000190237 ENSDART00000189345	ZNF423 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-216l23.1
chr19_+_2631565 Show fit	0.05	ENSDART00000171487	fam126a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	family with sequence similarity 126, member A
chr12_+_30265802 Show fit	0.05	ENSDART00000182412	afap1l2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	actin filament associated protein 1-like 2
chr17_-_29311835 Show fit	0.04	ENSDART00000104224	tecpr2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tectonin beta-propeller repeat containing 2
chr17_-_37054959 Show fit	0.04	ENSDART00000151921	dnmt3ab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	DNA (cytosine-5-)-methyltransferase 3 alpha b
chr22_-_209741 Show fit	0.04	ENSDART00000171954	ora1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	olfactory receptor class A related 1
chr25_+_29160102 Show fit	0.04	ENSDART00000162854	pkmb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	pyruvate kinase M1/2b
chr1_+_52392511 Show fit	0.03	ENSDART00000144025	si:ch211-217k17.8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-217k17.8
chr21_-_37790727 Show fit	0.03	ENSDART00000162907	gabrb4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	gamma-aminobutyric acid (GABA) A receptor, beta 4
chr16_+_31804590 Show fit	0.03	ENSDART00000167321	wnt4b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	wingless-type MMTV integration site family, member 4b
chr9_+_22364997 Show fit	0.03	ENSDART00000188054 ENSDART00000046116	crygs3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	crystallin, gamma S3
chr1_-_40911332 Show fit	0.03	ENSDART00000027463	hmx4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	H6 family homeobox 4
chr5_-_38094130 Show fit	0.03	ENSDART00000131831	si:ch211-284e13.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-284e13.4
chr21_+_8427059 Show fit	0.03	ENSDART00000143151	dennd1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	DENN/MADD domain containing 1A
chr19_-_14155781 Show fit	0.03	ENSDART00000169232	nr0b2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nuclear receptor subfamily 0, group B, member 2b
chr13_-_44630111 Show fit	0.03	ENSDART00000110092	mdga1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	MAM domain containing glycosylphosphatidylinositol anchor 1
chr21_-_35419486 Show fit	0.02	ENSDART00000138529	si:dkeyp-23e4.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkeyp-23e4.3
chr10_-_41400049 Show fit	0.02	ENSDART00000009838	gpat4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glycerol-3-phosphate acyltransferase 4
chr14_+_5385855 Show fit	0.02	ENSDART00000031508	lbx2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ladybird homeobox 2
chr8_-_50888806 Show fit	0.02	ENSDART00000053750	acsl2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	acyl-CoA synthetase long chain family member 2
chr15_-_35252522 Show fit	0.02	ENSDART00000144153 ENSDART00000059195	mff Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mitochondrial fission factor
chr5_-_28109416 Show fit	0.02	ENSDART00000042002	si:ch211-48m9.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-48m9.1
chr22_-_10117918 Show fit	0.01	ENSDART00000177475 ENSDART00000128590	rdh5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	retinol dehydrogenase 5 (11-cis/9-cis)
chr7_+_24165371 Show fit	0.01	ENSDART00000173472	si:ch211-216p19.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-216p19.5
chr15_+_41027466 Show fit	0.01	ENSDART00000075940	mtnr1ba Links NCBI UniProt ZFIN ENSEMBL Google Show fit	melatonin receptor type 1Ba
chr19_-_10971230 Show fit	0.01	ENSDART00000166196	LO018584.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr20_+_35484070 Show fit	0.01	ENSDART00000026234 ENSDART00000141675	mep1a.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	meprin A, alpha (PABA peptide hydrolase), tandem duplicate 2
chr23_+_579893 Show fit	0.01	ENSDART00000189098	BX323461.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr10_+_7593185 Show fit	0.00	ENSDART00000162617 ENSDART00000162590 ENSDART00000171744	ppp2cb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein phosphatase 2, catalytic subunit, beta isozyme
chr18_-_42333428 Show fit	0.00	ENSDART00000034225	cntn5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	contactin 5
chr10_-_40484531 Show fit	0.00	ENSDART00000142464 ENSDART00000180318	taar20z Links NCBI UniProt ZFIN ENSEMBL Google Show fit	trace amine associated receptor 20z
chr20_-_49704915 Show fit	0.00	ENSDART00000189232	COX7A2 (1 of many) Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cytochrome c oxidase subunit 7A2
chr4_+_73085993 Show fit	0.00	ENSDART00000165749	si:ch73-170d6.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-170d6.2
chr20_+_29209615 Show fit	0.00	ENSDART00000062350	katnbl1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	katanin p80 subunit B-like 1

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.6	GO:0098884	postsynaptic neurotransmitter receptor internalization(GO:0098884)
0.0	0.1	GO:0030205	dermatan sulfate metabolic process(GO:0030205)
0.0	0.0	GO:0032757	interleukin-8 production(GO:0032637) regulation of interleukin-8 production(GO:0032677) positive regulation of interleukin-8 production(GO:0032757)
0.0	0.1	GO:0045736	negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.0	0.2	GO:1905150	regulation of voltage-gated sodium channel activity(GO:1905150)
0.0	0.2	GO:0031581	hemidesmosome assembly(GO:0031581)
0.0	0.1	GO:1990845	adaptive thermogenesis(GO:1990845)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.6	GO:0098844	postsynaptic endocytic zone membrane(GO:0098844)
0.0	0.2	GO:0030056	hemidesmosome(GO:0030056)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0047757	chondroitin-glucuronate 5-epimerase activity(GO:0047757)
0.0	0.2	GO:0030506	ankyrin binding(GO:0030506)
0.0	0.1	GO:0001223	transcription coactivator binding(GO:0001223)
0.0	0.0	GO:0072545	tyrosine binding(GO:0072545)
0.0	0.1	GO:0004861	cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861)
0.0	0.2	GO:0031492	nucleosomal DNA binding(GO:0031492)