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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for hoxc9a

Z-value: 0.20

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Transcription factors associated with hoxc9a

Gene Symbol Gene ID Gene Info
hoxc9a
ENSDARG00000092809 homeobox C9a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hoxc9adr11_v1_chr23_+_36095260_360952600.331.9e-01Click!

Activity profile of hoxc9a motif

Sorted Z-values of hoxc9a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr19_-_27830818 0.29 ENSDART00000131767
papd7
PAP associated domain containing 7
chr18_-_39288894 0.28 ENSDART00000186216
mapk6
mitogen-activated protein kinase 6
chr1_-_681116 0.28 ENSDART00000165894
adamts1
ADAM metallopeptidase with thrombospondin type 1 motif, 1
chr6_+_38845697 0.27 ENSDART00000053187
stk35l
serine/threonine kinase 35, like
chr1_-_6085750 0.26 ENSDART00000138891
si:ch1073-345a8.1
si:ch1073-345a8.1
chr3_-_40232615 0.24 ENSDART00000155969
flii
flightless I actin binding protein
chr6_+_38626926 0.24 ENSDART00000190339
atp10a
ATPase phospholipid transporting 10A
chr17_+_19626479 0.22 ENSDART00000044993
ENSDART00000131863
rgs7a
regulator of G protein signaling 7a
chr6_+_38845848 0.22 ENSDART00000184907
stk35l
serine/threonine kinase 35, like
chr20_-_53949798 0.21 ENSDART00000153435
ppp2r5cb
protein phosphatase 2, regulatory subunit B', gamma b
chr25_+_3058924 0.20 ENSDART00000029580
fth1b
ferritin, heavy polypeptide 1b
chr11_-_13341483 0.19 ENSDART00000164978
mast3b
microtubule associated serine/threonine kinase 3b
chr6_-_43283122 0.18 ENSDART00000186022
frmd4ba
FERM domain containing 4Ba
chr11_-_13341051 0.18 ENSDART00000121872
mast3b
microtubule associated serine/threonine kinase 3b
chr22_+_10713713 0.17 ENSDART00000122349
hiat1b
hippocampus abundant transcript 1b
chr9_+_44722205 0.17 ENSDART00000086176
ENSDART00000145271
ENSDART00000132696
nckap1
NCK-associated protein 1
chr21_-_9769500 0.17 ENSDART00000170710
arhgap24
Rho GTPase activating protein 24
chr13_-_22961605 0.15 ENSDART00000143112
ENSDART00000057641
tspan15
tetraspanin 15
chr2_-_41723487 0.15 ENSDART00000170171
zgc:110158
zgc:110158
chr7_+_31051213 0.15 ENSDART00000148347
tjp1a
tight junction protein 1a
chr21_+_22878834 0.15 ENSDART00000065562
pcf11
PCF11 cleavage and polyadenylation factor subunit
chr2_-_41723165 0.14 ENSDART00000155577
zgc:110158
zgc:110158
chr19_+_7424347 0.14 ENSDART00000004622
sf3b4
splicing factor 3b, subunit 4
chr4_+_10754802 0.14 ENSDART00000181470
stab2
stabilin 2
chr10_+_37173029 0.13 ENSDART00000136510
ksr1a
kinase suppressor of ras 1a
chr1_-_23157583 0.13 ENSDART00000144208
adgrl3.1
adhesion G protein-coupled receptor L3.1
chr17_-_25630822 0.13 ENSDART00000126201
ENSDART00000105503
ENSDART00000151878
rab3gap2
RAB3 GTPase activating protein subunit 2 (non-catalytic)
chr22_-_21046843 0.13 ENSDART00000133982
ssbp4
single stranded DNA binding protein 4
chr3_-_37699992 0.12 ENSDART00000151193
gpatch8
G patch domain containing 8
chr7_+_31051603 0.12 ENSDART00000108721
tjp1a
tight junction protein 1a
chr12_-_22238004 0.11 ENSDART00000038310
ormdl3
ORMDL sphingolipid biosynthesis regulator 3
chr22_-_21046654 0.11 ENSDART00000064902
ssbp4
single stranded DNA binding protein 4
chr14_-_14640401 0.11 ENSDART00000168027
ENSDART00000167521
znf185
zinc finger protein 185 with LIM domain
chr11_+_18873113 0.11 ENSDART00000103969
ENSDART00000103968
magi1b
membrane associated guanylate kinase, WW and PDZ domain containing 1b
chr25_+_15997957 0.08 ENSDART00000140047
ppfibp2b
PTPRF interacting protein, binding protein 2b (liprin beta 2)
chr14_-_31715373 0.08 ENSDART00000127303
ENSDART00000173274
ENSDART00000173435
ENSDART00000172876
ENSDART00000173036
map7d3
MAP7 domain containing 3
chr20_+_23658791 0.08 ENSDART00000192145
si:ch211-191d2.2
si:ch211-191d2.2
chr14_-_4044545 0.08 ENSDART00000169527
snx25
sorting nexin 25
chr23_-_3721444 0.08 ENSDART00000141682
nudt3a
nudix (nucleoside diphosphate linked moiety X)-type motif 3a
chr17_-_51262430 0.08 ENSDART00000163222
trappc12
trafficking protein particle complex 12
chr17_+_15788100 0.08 ENSDART00000027667
rragd
ras-related GTP binding D
chr14_+_35024521 0.08 ENSDART00000158634
ENSDART00000170631
ebf3a
early B cell factor 3a
chr2_+_34967022 0.07 ENSDART00000134926
astn1
astrotactin 1
chr4_-_4261673 0.07 ENSDART00000150694
cd9b
CD9 molecule b
chr14_-_32959851 0.07 ENSDART00000075157
chic1
cysteine-rich hydrophobic domain 1
chr2_-_18830722 0.06 ENSDART00000165330
ENSDART00000165698
pbx1a
pre-B-cell leukemia homeobox 1a
chr5_+_63857055 0.06 ENSDART00000138950
rgs3b
regulator of G protein signaling 3b
chr17_-_19626357 0.06 ENSDART00000011432
reep3a
receptor accessory protein 3a
chr16_+_37891735 0.06 ENSDART00000178753
ENSDART00000142104
cep162
centrosomal protein 162
chr10_+_26571174 0.05 ENSDART00000148617
ENSDART00000112956
slc9a6b
solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6b
chr18_-_26510545 0.05 ENSDART00000135133
FRMD5
si:ch211-69m14.1
chr9_+_28232522 0.05 ENSDART00000031761
fzd5
frizzled class receptor 5
chr14_+_21783400 0.05 ENSDART00000164023
ankrd13d
ankyrin repeat domain 13 family, member D
chr24_+_39211288 0.04 ENSDART00000061540
im:7160594
im:7160594
chr3_-_23461954 0.04 ENSDART00000040065
casc3
cancer susceptibility candidate 3
chr3_-_8388344 0.04 ENSDART00000146856
rbfox3b
RNA binding fox-1 homolog 3b
chr17_-_20849879 0.04 ENSDART00000088100
ENSDART00000149630
ank3b
ankyrin 3b
chr9_-_34937025 0.04 ENSDART00000137888
cdc16
cell division cycle 16 homolog (S. cerevisiae)
chr21_+_22878991 0.04 ENSDART00000186399
pcf11
PCF11 cleavage and polyadenylation factor subunit
chr15_-_14589677 0.04 ENSDART00000172195
coq8b
coenzyme Q8B
chr8_+_47633438 0.04 ENSDART00000139096
si:ch211-251b21.1
si:ch211-251b21.1
chr10_+_31953502 0.04 ENSDART00000185634
lhfpl6
LHFPL tetraspan subfamily member 6
chr15_+_22722684 0.04 ENSDART00000156760
grik4
glutamate receptor, ionotropic, kainate 4
chr5_-_51619262 0.04 ENSDART00000134606
ENSDART00000081249
otpb
orthopedia homeobox b
chr4_-_20235904 0.04 ENSDART00000146621
ENSDART00000193655
stk38l
serine/threonine kinase 38 like
chr8_+_22931427 0.03 ENSDART00000063096
sypa
synaptophysin a
chr12_-_33558879 0.03 ENSDART00000161167
mbtd1
mbt domain containing 1
chr3_-_51109286 0.02 ENSDART00000172010
si:ch211-148f13.1
si:ch211-148f13.1
chr8_+_6954984 0.02 ENSDART00000145610
si:ch211-255g12.6
si:ch211-255g12.6
chr18_-_25855263 0.02 ENSDART00000042074
sema4ba
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ba
chr9_-_40014339 0.02 ENSDART00000166918
IKZF2
si:zfos-1425h8.1
chr16_-_35952789 0.02 ENSDART00000180118
eva1ba
eva-1 homolog Ba (C. elegans)
chr25_-_5963535 0.02 ENSDART00000155751
nuak1b
NUAK family, SNF1-like kinase, 1b
chr8_-_23701880 0.02 ENSDART00000139897
si:ch73-237c6.1
si:ch73-237c6.1
chr12_-_33558727 0.02 ENSDART00000086087
mbtd1
mbt domain containing 1
chr11_-_40457325 0.01 ENSDART00000128442
tnfrsf1b
tumor necrosis factor receptor superfamily, member 1B
chr4_+_21867522 0.01 ENSDART00000140400
acss3
acyl-CoA synthetase short chain family member 3
chr10_-_11385155 0.01 ENSDART00000064214
plac8.1
placenta-specific 8, tandem duplicate 1
chr16_-_16761164 0.01 ENSDART00000135872
si:dkey-27n14.1
si:dkey-27n14.1
chr5_-_37871526 0.01 ENSDART00000136450
arhgap35b
Rho GTPase activating protein 35b
chr5_-_51619742 0.01 ENSDART00000188537
otpb
orthopedia homeobox b
chr4_+_16715267 0.01 ENSDART00000143849
pkp2
plakophilin 2
chr7_-_26408472 0.00 ENSDART00000111494
gal3st4
galactose-3-O-sulfotransferase 4
chr12_-_6172154 0.00 ENSDART00000185434
a1cf
apobec1 complementation factor
chr1_-_59422880 0.00 ENSDART00000167244
si:ch211-188p14.2
si:ch211-188p14.2
chr25_+_9003879 0.00 ENSDART00000186228
rag1
recombination activating gene 1
chr23_+_11374168 0.00 ENSDART00000163083
chl1a
cell adhesion molecule L1-like a

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxc9a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:1901492 positive regulation of lymphangiogenesis(GO:1901492)
0.0 0.1 GO:1905038 regulation of sphingolipid biosynthetic process(GO:0090153) negative regulation of sphingolipid biosynthetic process(GO:0090155) negative regulation of ceramide biosynthetic process(GO:1900060) regulation of membrane lipid metabolic process(GO:1905038) regulation of ceramide biosynthetic process(GO:2000303)
0.0 0.2 GO:0006880 intracellular sequestering of iron ion(GO:0006880) sequestering of iron ion(GO:0097577)
0.0 0.2 GO:0035313 wound healing, spreading of epidermal cells(GO:0035313) negative regulation of ruffle assembly(GO:1900028)
0.0 0.2 GO:0006369 termination of RNA polymerase II transcription(GO:0006369)
0.0 0.3 GO:0036058 filtration diaphragm assembly(GO:0036058) slit diaphragm assembly(GO:0036060)
0.0 0.1 GO:1901910 diphosphoinositol polyphosphate metabolic process(GO:0071543) diadenosine pentaphosphate metabolic process(GO:1901906) diadenosine pentaphosphate catabolic process(GO:1901907) diadenosine hexaphosphate metabolic process(GO:1901908) diadenosine hexaphosphate catabolic process(GO:1901909) adenosine 5'-(hexahydrogen pentaphosphate) metabolic process(GO:1901910) adenosine 5'-(hexahydrogen pentaphosphate) catabolic process(GO:1901911)
0.0 0.1 GO:0048795 swim bladder morphogenesis(GO:0048795)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0031258 lamellipodium membrane(GO:0031258)
0.0 0.1 GO:0035339 SPOTS complex(GO:0035339)
0.0 0.1 GO:0032983 kainate selective glutamate receptor complex(GO:0032983)
0.0 0.1 GO:0034448 EGO complex(GO:0034448) Gtr1-Gtr2 GTPase complex(GO:1990131)
0.0 0.1 GO:0005879 axonemal microtubule(GO:0005879)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0015277 kainate selective glutamate receptor activity(GO:0015277)
0.0 0.2 GO:0008199 ferric iron binding(GO:0008199)
0.0 0.1 GO:0008486 endopolyphosphatase activity(GO:0000298) diphosphoinositol-polyphosphate diphosphatase activity(GO:0008486) bis(5'-adenosyl)-hexaphosphatase activity(GO:0034431) bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)
0.0 0.2 GO:0019211 phosphatase activator activity(GO:0019211) protein phosphatase activator activity(GO:0072542)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 REACTOME HYALURONAN UPTAKE AND DEGRADATION Genes involved in Hyaluronan uptake and degradation