PRJNA438478: RNAseq of wild type zebrafish germline

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
hoxb5a Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000013057	homeobox B5a
hoxb5b Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000054030	homeobox B5b
hoxb5b Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000113174	homeobox B5b

Gene	Promoter	Pearson corr. coef.	P-value	Plot
hoxb5a	dr11_v1_chr3_+_23707691_23707691	-0.23	3.5e-01	Click!
hoxb5b	dr11_v1_chr12_+_27129659_27129659	-0.20	4.4e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr16_-_29387215 Show fit	0.08	ENSDART00000148787	s100a1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	S100 calcium binding protein A1
chr22_+_25352530 Show fit	0.08	ENSDART00000176742 ENSDART00000113186	si:dkey-240e12.6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-240e12.6
chr15_-_25099679 Show fit	0.08	ENSDART00000154628	rflnb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	refilin B
chr19_-_27827744 Show fit	0.06	ENSDART00000181620	papd7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PAP associated domain containing 7
chr20_+_43113465 Show fit	0.05	ENSDART00000004842	dusp23a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	dual specificity phosphatase 23a
chr13_+_534453 Show fit	0.05	ENSDART00000147909	wu:fc17b08 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	wu:fc17b08
chr4_+_77966055 Show fit	0.04	ENSDART00000174203 ENSDART00000130100 ENSDART00000080665 ENSDART00000174317 ENSDART00000190123	zgc:113921 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:113921
chr2_-_15324837 Show fit	0.04	ENSDART00000015655	tecrl2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	trans-2,3-enoyl-CoA reductase-like 2b
chr17_+_20569806 Show fit	0.04	ENSDART00000113936	SAMD8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:162183
chr6_+_4255319 Show fit	0.04	ENSDART00000170351	nbeal1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neurobeachin-like 1
chr5_-_16791223 Show fit	0.04	ENSDART00000192744	atad1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATPase family, AAA domain containing 1a
chr4_-_77551860 Show fit	0.04	ENSDART00000188176	AL935186.6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr4_-_77563411 Show fit	0.04	ENSDART00000186841	AL935186.8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr15_-_684911 Show fit	0.04	ENSDART00000161685	zgc:171901 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:171901
chr15_-_29556757 Show fit	0.04	ENSDART00000060049	hspa13 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	heat shock protein 70 family, member 13
chr9_+_6082793 Show fit	0.03	ENSDART00000192045	st6gal2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ST6 beta-galactosamide alpha-2,6-sialyltranferase 2a
chr3_+_54776475 Show fit	0.03	ENSDART00000142710	si:ch211-74m13.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-74m13.1
chr19_+_43341115 Show fit	0.03	ENSDART00000145846 ENSDART00000102384	sesn2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sestrin 2
chr2_+_24317465 Show fit	0.03	ENSDART00000139339 ENSDART00000136284	mrpl34 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mitochondrial ribosomal protein L34
chr11_-_2297832 Show fit	0.03	ENSDART00000158266	znf740a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger protein 740a
chr13_-_44819254 Show fit	0.03	ENSDART00000131673	si:dkeyp-2e4.8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkeyp-2e4.8
chr19_+_43341424 Show fit	0.03	ENSDART00000134815	sesn2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sestrin 2
chr19_+_15441022 Show fit	0.03	ENSDART00000098970 ENSDART00000140276	lin28a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lin-28 homolog A (C. elegans)
chr20_+_51730658 Show fit	0.03	ENSDART00000010271	aida Links NCBI UniProt ZFIN ENSEMBL Google Show fit	axin interactor, dorsalization associated
chr9_+_16854121 Show fit	0.02	ENSDART00000110866	cln5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	CLN5, intracellular trafficking protein
chr3_+_54776117 Show fit	0.02	ENSDART00000189047 ENSDART00000115076	si:ch211-74m13.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-74m13.1
chr6_-_19340889 Show fit	0.02	ENSDART00000181407	mif4gda Links NCBI UniProt ZFIN ENSEMBL Google Show fit	MIF4G domain containing a
chr20_+_53181017 Show fit	0.02	ENSDART00000189692 ENSDART00000177109	FIG4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	FIG4 phosphoinositide 5-phosphatase
chr11_-_44030962 Show fit	0.02	ENSDART00000171910	FP016005.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr7_+_62320134 Show fit	0.02	ENSDART00000012089	stim2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	stromal interaction molecule 2b
chr10_+_26944418 Show fit	0.02	ENSDART00000135493	frmd8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	FERM domain containing 8
chr8_+_25962833 Show fit	0.02	ENSDART00000086583	si:dkey-72l14.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-72l14.4
chr10_+_2684958 Show fit	0.02	ENSDART00000112019	setd9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SET domain containing 9
chr7_+_56889879 Show fit	0.02	ENSDART00000039810	myo9aa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myosin IXAa
chr17_+_49081828 Show fit	0.02	ENSDART00000156492	tiam2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	T cell lymphoma invasion and metastasis 2a
chr9_+_48755638 Show fit	0.02	ENSDART00000047401	abcb11a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATP-binding cassette, sub-family B (MDR/TAP), member 11a
chr3_+_39579393 Show fit	0.02	ENSDART00000055170	cln3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ceroid-lipofuscinosis, neuronal 3
chr21_-_9769500 Show fit	0.01	ENSDART00000170710	arhgap24 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Rho GTPase activating protein 24
chr19_+_48060464 Show fit	0.01	ENSDART00000123163	zgc:85936 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:85936
chr4_-_25812329 Show fit	0.01	ENSDART00000146658	tmcc3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane and coiled-coil domain family 3
chr17_+_15041647 Show fit	0.01	ENSDART00000108999	samd4a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sterile alpha motif domain containing 4A
chr4_+_3482312 Show fit	0.01	ENSDART00000109044	grm8a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glutamate receptor, metabotropic 8a
chr11_+_24957858 Show fit	0.01	ENSDART00000145647	sulf2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sulfatase 2a
chr6_+_54888493 Show fit	0.01	ENSDART00000113331	nav1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neuron navigator 1b
chr13_-_86847 Show fit	0.01	ENSDART00000158062	pole2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	polymerase (DNA directed), epsilon 2
chr8_-_43847138 Show fit	0.01	ENSDART00000148358	adgrd1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adhesion G protein-coupled receptor D1
chr9_-_12034444 Show fit	0.01	ENSDART00000038651	znf804a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger protein 804A
chr15_-_3277635 Show fit	0.01	ENSDART00000189094	slc25a15a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15a
chr2_-_24317240 Show fit	0.01	ENSDART00000078975	trnau1apb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tRNA selenocysteine 1 associated protein 1b
chr5_-_26284276 Show fit	0.01	ENSDART00000148608	arvcfb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ARVCF, delta catenin family member b
chr5_-_71838520 Show fit	0.00	ENSDART00000174396	CU927890.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr7_+_36035432 Show fit	0.00	ENSDART00000179004	irx3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	iroquois homeobox 3a
chr15_-_12500938 Show fit	0.00	ENSDART00000159627	scn4ba Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sodium channel, voltage-gated, type IV, beta a
chr2_+_22823952 Show fit	0.00	ENSDART00000147935	aire Links NCBI UniProt ZFIN ENSEMBL Google Show fit	autoimmune regulator
chr7_-_72426484 Show fit	0.00	ENSDART00000190063	rph3ab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	rabphilin 3A homolog (mouse), b
chr22_+_1680628 Show fit	0.00	ENSDART00000166672	si:dkey-1b17.6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-1b17.6
chr5_-_9625459 Show fit	0.00	ENSDART00000143347	sh2b3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SH2B adaptor protein 3
chr6_-_10927766 Show fit	0.00	ENSDART00000134327	ccr7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chemokine (C-C motif) receptor 7
chr24_-_29822913 Show fit	0.00	ENSDART00000160929	aglb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase b
chr22_-_4812755 Show fit	0.00	ENSDART00000191739	CU570881.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr8_+_8927870 Show fit	0.00	ENSDART00000081985	pim2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim-2 proto-oncogene, serine/threonine kinase
chr22_-_7461603 Show fit	0.00	ENSDART00000170630	BX511034.6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr13_-_11986754 Show fit	0.00	ENSDART00000164214	npm3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nucleophosmin/nucleoplasmin, 3
chr14_-_43586150 Show fit	0.00	ENSDART00000113697	eif4ea Links NCBI UniProt ZFIN ENSEMBL Google Show fit	eukaryotic translation initiation factor 4ea
chr10_+_35439952 Show fit	0.00	ENSDART00000006284	hhla2a.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	HERV-H LTR-associating 2a, tandem duplicate 2
chr22_-_15385442 Show fit	0.00	ENSDART00000090975	tmem264 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane protein 264
chr6_-_18992896 Show fit	0.00	ENSDART00000170228	sept9b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	septin 9b
chr22_+_9049179 Show fit	0.00	ENSDART00000192625	si:ch211-213a13.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-213a13.2
chr15_-_41458613 Show fit	0.00	ENSDART00000141496	nlrc9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	NLR family CARD domain containing 9
chr19_+_23298037 Show fit	0.00	ENSDART00000183948	irgf1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	immunity-related GTPase family, f1
chr15_-_2803313 Show fit	0.00	ENSDART00000060839	tgfb1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transforming growth factor, beta 1a
chr19_+_17642356 Show fit	0.00	ENSDART00000176431	CR382334.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr3_-_5413018 Show fit	0.00	ENSDART00000063138	vmo1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	vitelline membrane outer layer 1 homolog a
chr4_+_38547203 Show fit	0.00	ENSDART00000171349	si:ch211-209n20.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-209n20.1
chr23_+_3513201 Show fit	0.00	ENSDART00000092258	spata2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	spermatogenesis associated 2
chr15_-_952891 Show fit	0.00	ENSDART00000153780	alox5b.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	arachidonate 5-lipoxygenase b, tandem duplicate 1
chr7_+_30867008 Show fit	0.00	ENSDART00000193106	apba2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	amyloid beta (A4) precursor protein-binding, family A, member 2b
chr14_-_25078569 Show fit	0.00	ENSDART00000172802 ENSDART00000173345 ENSDART00000135004	matr3l1.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	matrin 3-like 1.1
chr1_+_55703120 Show fit	0.00	ENSDART00000141089	adgre6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adhesion G protein-coupled receptor E6

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0032331	negative regulation of chondrocyte differentiation(GO:0032331) negative regulation of cartilage development(GO:0061037) negative regulation of chondrocyte development(GO:0061182) regulation of bone mineralization involved in bone maturation(GO:1900157) negative regulation of bone mineralization involved in bone maturation(GO:1900158) negative regulation of bone development(GO:1903011)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0031005	filamin binding(GO:0031005)