PRJNA438478: RNAseq of wild type zebrafish germline

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
hoxb1a Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000008174	homeobox B1a
hoxb1b-2 Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000112663	homeobox B1b

Gene	Promoter	Pearson corr. coef.	P-value	Plot
hoxb1a	dr11_v1_chr3_+_23768898_23768898	-0.06	8.1e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr6_-_53143667 Show fit	0.30	ENSDART00000079694	gnai2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b
chr19_-_867071 Show fit	0.27	ENSDART00000122257	eomesa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	eomesodermin homolog a
chr2_-_49031303 Show fit	0.20	ENSDART00000143471	cdc34b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cell division cycle 34 homolog (S. cerevisiae) b
chr17_+_19626479 Show fit	0.20	ENSDART00000044993 ENSDART00000131863	rgs7a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	regulator of G protein signaling 7a
chr4_-_10826575 Show fit	0.19	ENSDART00000164771 ENSDART00000067256	ppfibp1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PTPRF interacting protein, binding protein 1a (liprin beta 1)
chr6_-_4214297 Show fit	0.17	ENSDART00000191433	trak2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	trafficking protein, kinesin binding 2
chr3_-_6417328 Show fit	0.17	ENSDART00000160979	jpt1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Jupiter microtubule associated homolog 1b
chr3_+_40409100 Show fit	0.15	ENSDART00000103486	tnrc18 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	trinucleotide repeat containing 18
chr6_+_4255319 Show fit	0.15	ENSDART00000170351	nbeal1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neurobeachin-like 1
chr18_-_40753583 Show fit	0.15	ENSDART00000026767	akt2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	v-akt murine thymoma viral oncogene homolog 2
chr17_+_28102487 Show fit	0.14	ENSDART00000131638 ENSDART00000076265	zgc:91908 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:91908
chr22_+_10676981 Show fit	0.14	ENSDART00000138016	hyal2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	hyaluronoglucosaminidase 2b
chr3_-_55650771 Show fit	0.14	ENSDART00000162413	axin2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	axin 2 (conductin, axil)
chr13_-_22961605 Show fit	0.13	ENSDART00000143112 ENSDART00000057641	tspan15 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tetraspanin 15
chr3_-_1283247 Show fit	0.13	ENSDART00000149814	tcf20 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transcription factor 20
chr10_+_37182626 Show fit	0.12	ENSDART00000137636	ksr1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	kinase suppressor of ras 1a
chr9_+_21795917 Show fit	0.12	ENSDART00000169069	rev1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	REV1, polymerase (DNA directed)
chr2_+_25658112 Show fit	0.12	ENSDART00000051234	tnika Links NCBI UniProt ZFIN ENSEMBL Google Show fit	TRAF2 and NCK interacting kinase a
chr16_+_46401756 Show fit	0.12	ENSDART00000147370 ENSDART00000144000	rpz2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	rapunzel 2
chr15_-_33304133 Show fit	0.11	ENSDART00000186092	nbeab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neurobeachin b
chr2_+_25657958 Show fit	0.11	ENSDART00000161407	tnika Links NCBI UniProt ZFIN ENSEMBL Google Show fit	TRAF2 and NCK interacting kinase a
chr8_-_49207319 Show fit	0.10	ENSDART00000022870	fam110a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	family with sequence similarity 110, member A
chr15_-_25094026 Show fit	0.10	ENSDART00000129154	exo5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	exonuclease 5
chr4_+_26496489 Show fit	0.10	ENSDART00000160652	iqsec3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	IQ motif and Sec7 domain 3a
chr1_-_681116 Show fit	0.10	ENSDART00000165894	adamts1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ADAM metallopeptidase with thrombospondin type 1 motif, 1
chr3_-_55650417 Show fit	0.10	ENSDART00000171441	axin2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	axin 2 (conductin, axil)
chr23_+_27782071 Show fit	0.10	ENSDART00000131379	kmt2d Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lysine (K)-specific methyltransferase 2D
chr15_-_25093680 Show fit	0.09	ENSDART00000062695	exo5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	exonuclease 5
chr5_+_31959954 Show fit	0.09	ENSDART00000142826	myo1hb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myosin IHb
chr25_-_29072162 Show fit	0.09	ENSDART00000169269	arid3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	AT rich interactive domain 3B (BRIGHT-like)
chr13_+_50778187 Show fit	0.08	ENSDART00000159597	dntt Links NCBI UniProt ZFIN ENSEMBL Google Show fit	deoxynucleotidyltransferase, terminal
chr24_+_39518774 Show fit	0.08	ENSDART00000132939	dcun1d3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	defective in cullin neddylation 1 domain containing 3
chr14_-_24101897 Show fit	0.08	ENSDART00000143695	cpeb4a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cytoplasmic polyadenylation element binding protein 4a
chr16_-_20932896 Show fit	0.08	ENSDART00000180646	tax1bp1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Tax1 (human T-cell leukemia virus type I) binding protein 1b
chr2_+_23731194 Show fit	0.08	ENSDART00000155747	slc22a13a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 22 member 13a
chr5_-_16791223 Show fit	0.08	ENSDART00000192744	atad1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATPase family, AAA domain containing 1a
chr21_-_25395223 Show fit	0.07	ENSDART00000016219	ppme1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein phosphatase methylesterase 1
chr11_-_27702778 Show fit	0.07	ENSDART00000045942 ENSDART00000125352	phf2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PHD finger protein 2
chr4_-_13255700 Show fit	0.07	ENSDART00000162277 ENSDART00000026593	grip1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glutamate receptor interacting protein 1
chr10_+_32646402 Show fit	0.07	ENSDART00000137244	zbtb21 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger and BTB domain containing 21
chr11_-_40457325 Show fit	0.06	ENSDART00000128442	tnfrsf1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tumor necrosis factor receptor superfamily, member 1B
chr14_-_7888748 Show fit	0.06	ENSDART00000166293	ppp3cb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein phosphatase 3, catalytic subunit, beta isozyme
chr5_+_8964926 Show fit	0.06	ENSDART00000091397 ENSDART00000164535	tnksb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase b
chr9_+_35017702 Show fit	0.06	ENSDART00000193640	gabpa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	GA binding protein transcription factor, alpha subunit
chr3_-_21118969 Show fit	0.05	ENSDART00000129016	maza Links NCBI UniProt ZFIN ENSEMBL Google Show fit	MYC-associated zinc finger protein a (purine-binding transcription factor)
chr8_-_38201415 Show fit	0.05	ENSDART00000155189	pdlim2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PDZ and LIM domain 2 (mystique)
chr3_-_21062706 Show fit	0.05	ENSDART00000155605 ENSDART00000153686 ENSDART00000157168 ENSDART00000156614 ENSDART00000155743 ENSDART00000156275	fam57ba Links NCBI UniProt ZFIN ENSEMBL Google Show fit	family with sequence similarity 57, member Ba
chr7_+_21787507 Show fit	0.05	ENSDART00000100936	tmem88b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane protein 88 b
chr19_+_13994563 Show fit	0.05	ENSDART00000164696	tmem222b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane protein 222b
chr5_+_36896933 Show fit	0.05	ENSDART00000151984	srsf7a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	serine/arginine-rich splicing factor 7a
chr12_+_22580579 Show fit	0.05	ENSDART00000171725 ENSDART00000192290	capgb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	capping protein (actin filament), gelsolin-like b
chr24_+_32472155 Show fit	0.05	ENSDART00000098859	neurod6a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neuronal differentiation 6a
chr1_+_26626824 Show fit	0.04	ENSDART00000158193	coro2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	coronin, actin binding protein, 2A
chr8_-_5220125 Show fit	0.04	ENSDART00000035676	bnip3la Links NCBI UniProt ZFIN ENSEMBL Google Show fit	BCL2 interacting protein 3 like a
chr18_-_18875308 Show fit	0.04	ENSDART00000127182	arl2bp Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ADP-ribosylation factor-like 2 binding protein
chr5_-_37881345 Show fit	0.04	ENSDART00000084819	arhgap35b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Rho GTPase activating protein 35b
chr24_+_27548474 Show fit	0.04	ENSDART00000105774 ENSDART00000123368	ek1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	eph-like kinase 1
chr5_+_6617401 Show fit	0.04	ENSDART00000060532	zgc:110796 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:110796
chr15_-_46673161 Show fit	0.04	ENSDART00000125211	CABZ01044053.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr7_-_33350082 Show fit	0.03	ENSDART00000008785	anp32a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
chr7_+_36898850 Show fit	0.03	ENSDART00000113342	tox3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	TOX high mobility group box family member 3
chr10_-_2527342 Show fit	0.03	ENSDART00000184168	CU856539.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr2_+_10821579 Show fit	0.03	ENSDART00000179694	glmna Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glomulin, FKBP associated protein a
chr4_+_21129752 Show fit	0.03	ENSDART00000169764	syt1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	synaptotagmin Ia
chr5_-_52277643 Show fit	0.03	ENSDART00000010757	rgmb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	repulsive guidance molecule family member b
chr5_+_35398745 Show fit	0.02	ENSDART00000098010	ptger4b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	prostaglandin E receptor 4 (subtype EP4) b
chr18_-_18874921 Show fit	0.02	ENSDART00000193332	arl2bp Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ADP-ribosylation factor-like 2 binding protein
chr17_-_20897407 Show fit	0.02	ENSDART00000149481	ank3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ankyrin 3b
chr11_+_30817943 Show fit	0.02	ENSDART00000150130 ENSDART00000159997	cacna1ab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b
chr3_+_29714775 Show fit	0.02	ENSDART00000041388	cacng2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calcium channel, voltage-dependent, gamma subunit 2a
chr7_-_37547889 Show fit	0.02	ENSDART00000193359	cylda Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cylindromatosis (turban tumor syndrome), a
chr6_+_19383267 Show fit	0.02	ENSDART00000166549	mchr1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	melanin-concentrating hormone receptor 1a
chr17_-_28101880 Show fit	0.02	ENSDART00000149458 ENSDART00000149226 ENSDART00000085758	kdm1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lysine (K)-specific demethylase 1a
chr2_+_10821127 Show fit	0.02	ENSDART00000145770 ENSDART00000174629 ENSDART00000081094	glmna Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glomulin, FKBP associated protein a
chr17_-_20897250 Show fit	0.02	ENSDART00000088106	ank3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ankyrin 3b
chr9_+_20781047 Show fit	0.02	ENSDART00000139174	fam46c Links NCBI UniProt ZFIN ENSEMBL Google Show fit	family with sequence similarity 46, member C
chr18_+_28102620 Show fit	0.01	ENSDART00000132342	kiaa1549lb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	KIAA1549-like b
chr16_+_25196572 Show fit	0.01	ENSDART00000141956	tyrobp Links NCBI UniProt ZFIN ENSEMBL Google Show fit	TYRO protein tyrosine kinase binding protein
chr20_+_1088658 Show fit	0.01	ENSDART00000162991	BX537249.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr7_+_7151832 Show fit	0.01	ENSDART00000109485	gal3st3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	galactose-3-O-sulfotransferase 3
chr9_+_20780813 Show fit	0.01	ENSDART00000142787	fam46c Links NCBI UniProt ZFIN ENSEMBL Google Show fit	family with sequence similarity 46, member C
chr25_+_2668892 Show fit	0.01	ENSDART00000122929	bbs4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Bardet-Biedl syndrome 4
chr9_-_53537989 Show fit	0.01	ENSDART00000114022	slitrk5b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SLIT and NTRK-like family, member 5b
chr10_-_25591194 Show fit	0.01	ENSDART00000131640	tiam1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	T cell lymphoma invasion and metastasis 1a
chr8_-_39739056 Show fit	0.01	ENSDART00000147992	si:ch211-170d8.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-170d8.5
chr1_+_58370526 Show fit	0.01	ENSDART00000067775	slc27a1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 27 (fatty acid transporter), member 1b
chr1_-_10577945 Show fit	0.01	ENSDART00000179237 ENSDART00000040502 ENSDART00000186876	trpc5a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transient receptor potential cation channel, subfamily C, member 5a
chr9_+_22003942 Show fit	0.01	ENSDART00000091013	si:dkey-57a22.15 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-57a22.15
chr2_+_17451656 Show fit	0.01	ENSDART00000163620	BX640408.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr24_+_28528000 Show fit	0.00	ENSDART00000155924	arhgap29a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Rho GTPase activating protein 29a
chr10_-_31175744 Show fit	0.00	ENSDART00000191728	pknox2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	pbx/knotted 1 homeobox 2
chr8_-_39903803 Show fit	0.00	ENSDART00000012391	cabp1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calcium binding protein 1a
chr1_-_49505449 Show fit	0.00	ENSDART00000187294 ENSDART00000132171	si:dkeyp-80c12.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkeyp-80c12.5
chr8_+_6954984 Show fit	0.00	ENSDART00000145610	si:ch211-255g12.6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-255g12.6
chr8_+_6410933 Show fit	0.00	ENSDART00000168789	lrrtm4l2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	leucine rich repeat transmembrane neuronal 4 like 2
chr2_+_22765492 Show fit	0.00	ENSDART00000133222	espnlb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	espin like b
chr1_-_9227804 Show fit	0.00	ENSDART00000190360	gng13a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	guanine nucleotide binding protein (G protein), gamma 13a
chr10_-_27049170 Show fit	0.00	ENSDART00000143451	cnih2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cornichon family AMPA receptor auxiliary protein 2
chr2_+_55984788 Show fit	0.00	ENSDART00000183599	nmrk2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nicotinamide riboside kinase 2
chr16_-_16761164 Show fit	0.00	ENSDART00000135872	si:dkey-27n14.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-27n14.1
chr24_-_21713883 Show fit	0.00	ENSDART00000081357	flt3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fms-related tyrosine kinase 3
chr10_-_44305180 Show fit	0.00	ENSDART00000187552	CDK2AP1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cyclin dependent kinase 2 associated protein 1

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.3	GO:0060571	invagination involved in gastrulation with mouth forming second(GO:0055109) morphogenesis of an epithelial fold(GO:0060571)
0.0	0.2	GO:0046324	regulation of glucose import(GO:0046324)
0.0	0.1	GO:0070987	error-free translesion synthesis(GO:0070987)
0.0	0.2	GO:0098957	anterograde axonal transport of mitochondrion(GO:0098957)
0.0	0.3	GO:0035588	adenosine receptor signaling pathway(GO:0001973) purinergic receptor signaling pathway(GO:0035587) G-protein coupled purinergic receptor signaling pathway(GO:0035588)
0.0	0.1	GO:0061188	regulation of chromatin silencing at rDNA(GO:0061187) negative regulation of chromatin silencing at rDNA(GO:0061188)
0.0	0.2	GO:2000054	negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification(GO:2000054)
0.0	0.1	GO:0032206	positive regulation of telomere maintenance(GO:0032206) regulation of telomere capping(GO:1904353) positive regulation of telomere capping(GO:1904355)
0.0	0.1	GO:0002931	response to ischemia(GO:0002931)
0.0	0.1	GO:0030214	hyaluronan catabolic process(GO:0030214)
0.0	0.1	GO:0003428	growth plate cartilage morphogenesis(GO:0003422) chondrocyte intercalation involved in growth plate cartilage morphogenesis(GO:0003428)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005955	calcineurin complex(GO:0005955)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0045145	single-stranded DNA 5'-3' exodeoxyribonuclease activity(GO:0045145)
0.0	0.1	GO:0033906	hyaluronoglucuronidase activity(GO:0033906)
0.0	0.1	GO:0055105	ubiquitin-protein transferase inhibitor activity(GO:0055105)
0.0	0.1	GO:0033192	calcium-dependent protein serine/threonine phosphatase activity(GO:0004723) calmodulin-dependent protein phosphatase activity(GO:0033192)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	PID BETA CATENIN DEG PATHWAY	Degradation of beta catenin

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	REACTOME NEGATIVE REGULATION OF THE PI3K AKT NETWORK	Genes involved in Negative regulation of the PI3K/AKT network