PRJNA438478: RNAseq of wild type zebrafish germline

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
hoxb13a Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000056015	homeobox B13a

Gene	Promoter	Pearson corr. coef.	P-value	Plot
hoxb13a	dr11_v1_chr3_+_23654233_23654233	-0.52	2.8e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr17_+_21295132 Show fit	0.49	ENSDART00000103845	eno4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	enolase family member 4
chr5_-_61970674 Show fit	0.44	ENSDART00000143161	znf541 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger protein 541
chr22_+_18187857 Show fit	0.41	ENSDART00000166300	mef2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myocyte enhancer factor 2b
chr7_-_33130552 Show fit	0.39	ENSDART00000127006	mns1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	meiosis-specific nuclear structural 1
chr18_+_1154189 Show fit	0.36	ENSDART00000135090	si:ch1073-75f15.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch1073-75f15.2
chr22_+_18188045 Show fit	0.30	ENSDART00000140106	mef2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myocyte enhancer factor 2b
chr7_-_30367650 Show fit	0.29	ENSDART00000075519	aldh1a2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	aldehyde dehydrogenase 1 family, member A2
chr20_+_29743904 Show fit	0.28	ENSDART00000146366 ENSDART00000153154	kidins220b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	kinase D-interacting substrate 220b
chr1_-_58562129 Show fit	0.28	ENSDART00000159070	slc27a1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 27 (fatty acid transporter), member 1b
chr25_+_28823952 Show fit	0.28	ENSDART00000067072	nfybb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nuclear transcription factor Y, beta b
chr19_-_5380770 Show fit	0.27	ENSDART00000000221	krt91 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	keratin 91
chr13_+_17694845 Show fit	0.21	ENSDART00000079778	ifit8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	interferon-induced protein with tetratricopeptide repeats 8
chr1_-_58561963 Show fit	0.20	ENSDART00000165040	slc27a1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 27 (fatty acid transporter), member 1b
chr24_+_37903448 Show fit	0.19	ENSDART00000155476	ccdc78 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	coiled-coil domain containing 78
chr13_+_22675802 Show fit	0.19	ENSDART00000145538 ENSDART00000143312	zgc:193505 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:193505
chr14_-_24761132 Show fit	0.17	ENSDART00000146299	slit3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	slit homolog 3 (Drosophila)
chr18_+_44649804 Show fit	0.17	ENSDART00000059063	ehd2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	EH-domain containing 2b
chr17_-_15382704 Show fit	0.16	ENSDART00000005313	zgc:85722 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:85722
chr15_-_28596507 Show fit	0.16	ENSDART00000156800	si:ch211-225b7.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-225b7.5
chr11_-_29623380 Show fit	0.16	ENSDART00000162587 ENSDART00000193935 ENSDART00000191646	chd5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chromodomain helicase DNA binding protein 5
chr22_+_15624371 Show fit	0.15	ENSDART00000124868	lpl Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lipoprotein lipase
chr12_-_7253270 Show fit	0.14	ENSDART00000035762	ube2d1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ubiquitin-conjugating enzyme E2D 1b
chr7_+_39401388 Show fit	0.14	ENSDART00000144750	tnni2b.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	troponin I type 2b (skeletal, fast), tandem duplicate 1
chr7_+_33130639 Show fit	0.14	ENSDART00000142450 ENSDART00000173967 ENSDART00000173832	zgc:153219 Links NCBI UniProt ZFIN ENSEMBL Google Show fit si:ch211-194p6.7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:153219 si:ch211-194p6.7
chr7_-_20865005 Show fit	0.14	ENSDART00000190752	fis1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fission, mitochondrial 1
chr6_+_35362225 Show fit	0.13	ENSDART00000133783 ENSDART00000102483	rgs4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	regulator of G protein signaling 4
chr25_-_35599887 Show fit	0.12	ENSDART00000153827	clpxb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	caseinolytic mitochondrial matrix peptidase chaperone subunit b
chr3_+_60044780 Show fit	0.12	ENSDART00000080437	zgc:113030 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:113030
chr1_+_47486104 Show fit	0.12	ENSDART00000114746	lrrc58a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	leucine rich repeat containing 58a
chr16_-_21785261 Show fit	0.11	ENSDART00000078858	si:ch73-86n18.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-86n18.1
chr5_-_26181863 Show fit	0.11	ENSDART00000098500	ccdc125 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	coiled-coil domain containing 125
chr3_+_32443395 Show fit	0.11	ENSDART00000188447	prr12b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	proline rich 12b
chr1_-_44940830 Show fit	0.10	ENSDART00000097500 ENSDART00000134464 ENSDART00000137216	tmem176 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane protein 176
chr2_-_59145027 Show fit	0.10	ENSDART00000128320	FO834803.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr23_+_30048849 Show fit	0.10	ENSDART00000126027	uts2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	urotensin 2, alpha
chr7_-_40082053 Show fit	0.09	ENSDART00000083719 ENSDART00000173687	shrprbck1r Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sharpin and rbck1 related
chr14_+_23184517 Show fit	0.09	ENSDART00000181410	enox2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ecto-NOX disulfide-thiol exchanger 2
chr24_-_23675446 Show fit	0.09	ENSDART00000066644	hnf4g Links NCBI UniProt ZFIN ENSEMBL Google Show fit	hepatocyte nuclear factor 4, gamma
chr18_+_39327010 Show fit	0.08	ENSDART00000012164	tmod2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tropomodulin 2
chr20_-_48485354 Show fit	0.08	ENSDART00000124040 ENSDART00000148437	insm1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	insulinoma-associated 1a
chr13_-_26799244 Show fit	0.08	ENSDART00000036419	vrk2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	vaccinia related kinase 2
chr9_-_14683574 Show fit	0.08	ENSDART00000144022	pard3bb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	par-3 family cell polarity regulator beta b
chr23_+_35759843 Show fit	0.07	ENSDART00000047082	gdap1l1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ganglioside induced differentiation associated protein 1-like 1
chr5_+_34622320 Show fit	0.07	ENSDART00000141338	enc1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ectodermal-neural cortex 1
chr6_-_12644563 Show fit	0.07	ENSDART00000153797	dock9b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	dedicator of cytokinesis 9b
chr20_-_25709247 Show fit	0.07	ENSDART00000146711	si:dkeyp-117h8.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkeyp-117h8.2
chr10_-_7785930 Show fit	0.07	ENSDART00000043961 ENSDART00000111058	mpx Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myeloid-specific peroxidase
chr24_-_23323526 Show fit	0.07	ENSDART00000112256 ENSDART00000176903	zfhx4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger homeobox 4
chr2_+_45548890 Show fit	0.06	ENSDART00000113994	fndc7a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fibronectin type III domain containing 7a
chr17_+_15788100 Show fit	0.06	ENSDART00000027667	rragd Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ras-related GTP binding D
chr6_-_52348562 Show fit	0.06	ENSDART00000142565 ENSDART00000145369 ENSDART00000016890	eif6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	eukaryotic translation initiation factor 6
chr3_-_50118140 Show fit	0.06	ENSDART00000131913	hgs Links NCBI UniProt ZFIN ENSEMBL Google Show fit	hepatocyte growth factor-regulated tyrosine kinase substrate
chr10_+_39164638 Show fit	0.05	ENSDART00000188997	CU633908.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr13_-_35892243 Show fit	0.05	ENSDART00000002750 ENSDART00000122810 ENSDART00000162399	tacc3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transforming, acidic coiled-coil containing protein 3
chr25_+_19106574 Show fit	0.05	ENSDART00000067332	rlbp1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	retinaldehyde binding protein 1b
chr23_-_7799184 Show fit	0.05	ENSDART00000190946 ENSDART00000165427	myt1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myelin transcription factor 1b
chr5_-_46980651 Show fit	0.05	ENSDART00000181022 ENSDART00000168038	edil3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	EGF-like repeats and discoidin I-like domains 3a
chr21_-_37733287 Show fit	0.05	ENSDART00000157826	mpp1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	membrane protein, palmitoylated 1
chr13_-_35892051 Show fit	0.04	ENSDART00000145884	tacc3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transforming, acidic coiled-coil containing protein 3
chr17_-_23412705 Show fit	0.04	ENSDART00000126995	si:ch211-149k12.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-149k12.3
chr1_+_44941031 Show fit	0.04	ENSDART00000141145	si:dkey-9i23.16 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-9i23.16
chr23_+_31596441 Show fit	0.04	ENSDART00000053534	tbpl1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	TBP-like 1
chr21_-_25741411 Show fit	0.04	ENSDART00000101211	cldnh Links NCBI UniProt ZFIN ENSEMBL Google Show fit	claudin h
chr12_+_41697664 Show fit	0.04	ENSDART00000162302	bnip3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	BCL2 interacting protein 3
chr2_-_31735142 Show fit	0.04	ENSDART00000130903	ralyl Links NCBI UniProt ZFIN ENSEMBL Google Show fit	RALY RNA binding protein like
chr23_-_19682971 Show fit	0.04	ENSDART00000048891	zgc:193598 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:193598
chr12_-_16524727 Show fit	0.04	ENSDART00000166645	FO704724.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr15_+_11381532 Show fit	0.03	ENSDART00000124172	si:ch73-321d9.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-321d9.2
chr7_-_31781339 Show fit	0.03	ENSDART00000142666	nap1l4b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nucleosome assembly protein 1-like 4b
chr25_+_4750972 Show fit	0.03	ENSDART00000168903	si:zfos-2372e4.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:zfos-2372e4.1
chr15_-_17406056 Show fit	0.03	ENSDART00000146735	tubd1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tubulin, delta 1
chr16_-_41717063 Show fit	0.03	ENSDART00000084610	cep85 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	centrosomal protein 85
chr11_-_30611814 Show fit	0.03	ENSDART00000089803	slc8a1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 8 (sodium/calcium exchanger), member 1a
chr8_+_30709685 Show fit	0.02	ENSDART00000133989	upb1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ureidopropionase, beta
chr21_-_27273147 Show fit	0.02	ENSDART00000143239	mark2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	MAP/microtubule affinity-regulating kinase 2a
chr17_-_45150763 Show fit	0.02	ENSDART00000155043 ENSDART00000156786 ENSDART00000191147	tmed8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane p24 trafficking protein 8
chr10_-_21953643 Show fit	0.02	ENSDART00000188921 ENSDART00000193569	FO744833.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr2_+_16597011 Show fit	0.02	ENSDART00000160641 ENSDART00000125413	xrn1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	5'-3' exoribonuclease 1
chr22_+_11857356 Show fit	0.02	ENSDART00000179540	mras Links NCBI UniProt ZFIN ENSEMBL Google Show fit	muscle RAS oncogene homolog
chr2_-_4070850 Show fit	0.02	ENSDART00000159990	yme1l1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	YME1-like 1b
chr15_+_45586471 Show fit	0.02	ENSDART00000165699	cldn15lb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	claudin 15-like b
chr24_+_1042594 Show fit	0.02	ENSDART00000109117	si:dkey-192l18.9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-192l18.9
chr20_-_27733683 Show fit	0.01	ENSDART00000103317 ENSDART00000138139	zgc:153157 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:153157
chr2_-_31661609 Show fit	0.01	ENSDART00000144383	si:ch211-106h4.9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-106h4.9
chr21_-_2173300 Show fit	0.01	ENSDART00000172276	zgc:163077 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:163077
chr25_+_25453221 Show fit	0.01	ENSDART00000176822	rassf7a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7a
chr19_-_42557416 Show fit	0.01	ENSDART00000163217 ENSDART00000128278 ENSDART00000162304 ENSDART00000166556	si:dkey-267n13.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-267n13.1
chr13_-_49802194 Show fit	0.00	ENSDART00000148722	b3galnt2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	beta-1,3-N-acetylgalactosaminyltransferase 2
chr8_-_25120231 Show fit	0.00	ENSDART00000147308	amigo1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adhesion molecule with Ig-like domain 1
chr17_-_7371564 Show fit	0.00	ENSDART00000060336	rab32b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	RAB32b, member RAS oncogene family
chr17_-_52587598 Show fit	0.00	ENSDART00000061497	si:ch211-173a9.6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-173a9.6
chr5_+_27434601 Show fit	0.00	ENSDART00000064701	loxl2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lysyl oxidase-like 2b

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.5	GO:0031650	heat generation(GO:0031649) regulation of heat generation(GO:0031650) positive regulation of heat generation(GO:0031652) regulation of phospholipid biosynthetic process(GO:0071071) negative regulation of phospholipid biosynthetic process(GO:0071072)
0.1	0.3	GO:0061113	pancreas morphogenesis(GO:0061113)
0.1	0.5	GO:0032889	regulation of vacuole fusion, non-autophagic(GO:0032889)
0.0	0.1	GO:0043653	peroxisome fission(GO:0016559) mitochondrial fragmentation involved in apoptotic process(GO:0043653)
0.0	0.1	GO:1902626	mature ribosome assembly(GO:0042256) assembly of large subunit precursor of preribosome(GO:1902626)
0.0	0.1	GO:0051660	establishment of centrosome localization(GO:0051660)
0.0	0.1	GO:0097039	protein linear polyubiquitination(GO:0097039)
0.0	0.1	GO:0007624	ultradian rhythm(GO:0007624)
0.0	0.1	GO:0003322	pancreatic A cell development(GO:0003322)
0.0	0.1	GO:0060221	retinal rod cell differentiation(GO:0060221)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.5	GO:0000015	phosphopyruvate hydratase complex(GO:0000015)
0.0	0.3	GO:0016602	CCAAT-binding factor complex(GO:0016602)
0.0	0.1	GO:0031231	integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231)
0.0	0.1	GO:0034448	EGO complex(GO:0034448) Gtr1-Gtr2 GTPase complex(GO:1990131)
0.0	0.1	GO:0042627	chylomicron(GO:0042627)
0.0	0.1	GO:0071797	LUBAC complex(GO:0071797)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.5	GO:0031957	very long-chain fatty acid-CoA ligase activity(GO:0031957)
0.1	0.5	GO:0004634	phosphopyruvate hydratase activity(GO:0004634)
0.0	0.1	GO:0034185	apolipoprotein binding(GO:0034185)
0.0	0.3	GO:0004029	aldehyde dehydrogenase (NAD) activity(GO:0004029)
0.0	0.7	GO:0042826	histone deacetylase binding(GO:0042826)
0.0	0.2	GO:0048495	Roundabout binding(GO:0048495)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT	Genes involved in Chylomicron-mediated lipid transport