PRJNA438478: RNAseq of wild type zebrafish germline

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
hoxa11a Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000104162	homeobox A11a

Gene	Promoter	Pearson corr. coef.	P-value	Plot
hoxa11a	dr11_v1_chr19_+_19737214_19737300	0.09	7.2e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr4_-_20108833 Show fit	0.52	ENSDART00000100867	fam3c Links NCBI UniProt ZFIN ENSEMBL Google Show fit	family with sequence similarity 3, member C
chr16_-_10316359 Show fit	0.44	ENSDART00000104025	flot1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	flotillin 1b
chr21_+_13128180 Show fit	0.43	ENSDART00000081426	odf2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	outer dense fiber of sperm tails 2a
chr2_-_37874647 Show fit	0.42	ENSDART00000039386	zgc:66427 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:66427
chr1_+_31019165 Show fit	0.40	ENSDART00000102210	itga6b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	integrin, alpha 6b
chr19_+_7424347 Show fit	0.36	ENSDART00000004622	sf3b4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	splicing factor 3b, subunit 4
chr16_-_47426482 Show fit	0.33	ENSDART00000148631 ENSDART00000149723	sept7b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	septin 7b
chr9_+_20483846 Show fit	0.33	ENSDART00000192067 ENSDART00000145111	parp4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	poly (ADP-ribose) polymerase family, member 4
chr8_-_33154677 Show fit	0.29	ENSDART00000133300	zbtb34 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger and BTB domain containing 34
chr20_+_34671386 Show fit	0.29	ENSDART00000152836 ENSDART00000138226	elp3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	elongator acetyltransferase complex subunit 3
chr2_+_54696042 Show fit	0.28	ENSDART00000074270	ankrd12 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ankyrin repeat domain 12
chr24_-_21090447 Show fit	0.27	ENSDART00000136507 ENSDART00000140786 ENSDART00000184841	qtrt2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	queuine tRNA-ribosyltransferase accessory subunit 2
chr17_+_44463230 Show fit	0.25	ENSDART00000130311	naa30 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	N(alpha)-acetyltransferase 30, NatC catalytic subunit
chr15_+_44093286 Show fit	0.22	ENSDART00000114352	zgc:112998 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:112998
chr21_-_25618175 Show fit	0.21	ENSDART00000133512	fosl1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	FOS-like antigen 1b
chr13_+_42309688 Show fit	0.21	ENSDART00000158367	ide Links NCBI UniProt ZFIN ENSEMBL Google Show fit	insulin-degrading enzyme
chr7_+_9308625 Show fit	0.21	ENSDART00000084598	selenos Links NCBI UniProt ZFIN ENSEMBL Google Show fit	selenoprotein S
chr21_+_13127742 Show fit	0.18	ENSDART00000179221	odf2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	outer dense fiber of sperm tails 2a
chr4_-_6373735 Show fit	0.18	ENSDART00000140100	MDFIC Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-156e19.1
chr10_+_2587234 Show fit	0.18	ENSDART00000126937	wu:fb59d01 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	wu:fb59d01
chr7_-_30624435 Show fit	0.17	ENSDART00000173828	rnf111 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ring finger protein 111
chr12_-_11560794 Show fit	0.17	ENSDART00000149098 ENSDART00000169975	plekha1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1b
chr7_-_30280934 Show fit	0.16	ENSDART00000126741	serf2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	small EDRK-rich factor 2
chr1_+_36722122 Show fit	0.16	ENSDART00000111566	tmem184c Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane protein 184C
chr5_-_32489796 Show fit	0.16	ENSDART00000168870	gpr107 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	G protein-coupled receptor 107
chr13_+_29925397 Show fit	0.15	ENSDART00000123482	cuedc2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	CUE domain containing 2
chr25_-_18002937 Show fit	0.14	ENSDART00000149696	cep290 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	centrosomal protein 290
chr3_-_40254634 Show fit	0.14	ENSDART00000154562	top3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	DNA topoisomerase III alpha
chr6_-_40744720 Show fit	0.14	ENSDART00000154916 ENSDART00000186922	p4htm Links NCBI UniProt ZFIN ENSEMBL Google Show fit	prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)
chr25_-_18002498 Show fit	0.13	ENSDART00000158688	cep290 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	centrosomal protein 290
chr6_+_42338309 Show fit	0.13	ENSDART00000015277	gpx1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glutathione peroxidase 1b
chr16_-_6205790 Show fit	0.12	ENSDART00000038495	ctnnb1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	catenin (cadherin-associated protein), beta 1
chr23_+_33752275 Show fit	0.11	ENSDART00000007260	si:ch211-210c8.6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-210c8.6
chr1_+_45056371 Show fit	0.11	ENSDART00000073689 ENSDART00000167309	btr01 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	bloodthirsty-related gene family, member 1
chr18_-_17087138 Show fit	0.10	ENSDART00000135597	zc3h18 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger CCCH-type containing 18
chr11_-_26832685 Show fit	0.10	ENSDART00000153519	iqsec1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	IQ motif and Sec7 domain 1b
chr3_+_24190207 Show fit	0.10	ENSDART00000034762	prr15la Links NCBI UniProt ZFIN ENSEMBL Google Show fit	proline rich 15-like a
chr12_+_33361948 Show fit	0.10	ENSDART00000124982	fasn Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fatty acid synthase
chr12_-_26851726 Show fit	0.10	ENSDART00000047724	zeb1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger E-box binding homeobox 1b
chr12_+_27117609 Show fit	0.09	ENSDART00000076154	hoxb8b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	homeobox B8b
chr11_+_24716837 Show fit	0.09	ENSDART00000145217	zgc:153953 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:153953
chr22_-_33916620 Show fit	0.09	ENSDART00000191276	CR974456.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr5_+_36611128 Show fit	0.08	ENSDART00000097684	nova1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neuro-oncological ventral antigen 1
chr8_+_23861461 Show fit	0.08	ENSDART00000037109	srpk1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SRSF protein kinase 1a
chr5_+_59397739 Show fit	0.06	ENSDART00000148659	clip2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	CAP-GLY domain containing linker protein 2
chr15_-_734203 Show fit	0.06	ENSDART00000177867 ENSDART00000154918	si:dkey-7i4.21 Links NCBI UniProt ZFIN ENSEMBL Google Show fit BX004964.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-7i4.21
chr11_+_43751263 Show fit	0.06	ENSDART00000163843	zgc:153431 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:153431
chr11_+_25560072 Show fit	0.06	ENSDART00000124131 ENSDART00000147179	mbd1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	methyl-CpG binding domain protein 1b
chr17_-_23727978 Show fit	0.05	ENSDART00000079600	minpp1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	multiple inositol-polyphosphate phosphatase 1a
chr17_+_17764979 Show fit	0.05	ENSDART00000105013	alkbh1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	alkB homolog 1, histone H2A dioxygenase
chr9_-_39005317 Show fit	0.05	ENSDART00000014207	myl1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myosin, light chain 1, alkali; skeletal, fast
chr4_+_39368978 Show fit	0.05	ENSDART00000160640	si:dkey-261o4.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-261o4.1
chr11_+_25560632 Show fit	0.05	ENSDART00000033914	mbd1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	methyl-CpG binding domain protein 1b
chr17_-_31695217 Show fit	0.04	ENSDART00000104332 ENSDART00000143090	lin52 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lin-52 DREAM MuvB core complex component
chr6_+_49551614 Show fit	0.04	ENSDART00000022581	rab22a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	RAB22A, member RAS oncogene family
chr8_-_12432604 Show fit	0.04	ENSDART00000133350 ENSDART00000140699 ENSDART00000101174	traf1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	TNF receptor-associated factor 1
chr9_-_23922011 Show fit	0.04	ENSDART00000145734	col6a3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	collagen, type VI, alpha 3
chr10_+_33990572 Show fit	0.04	ENSDART00000138547	fryb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	furry homolog b (Drosophila)
chr23_-_33750307 Show fit	0.03	ENSDART00000162772	bin2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	bridging integrator 2a
chr23_-_33750135 Show fit	0.03	ENSDART00000187641	bin2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	bridging integrator 2a
chr9_-_3671911 Show fit	0.03	ENSDART00000102900	sp5a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Sp5 transcription factor a
chr6_-_53334259 Show fit	0.03	ENSDART00000172465	gnb1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	guanine nucleotide binding protein (G protein), beta polypeptide 1b
chr7_-_18508815 Show fit	0.03	ENSDART00000173539	rgs12a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	regulator of G protein signaling 12a
chr10_-_25561751 Show fit	0.03	ENSDART00000147089	grik1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glutamate receptor, ionotropic, kainate 1a
chr13_-_25196758 Show fit	0.03	ENSDART00000184722	adka Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adenosine kinase a
chr5_+_59397348 Show fit	0.03	ENSDART00000175642	clip2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	CAP-GLY domain containing linker protein 2
chr9_-_2892250 Show fit	0.03	ENSDART00000140695	cdca7a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cell division cycle associated 7a
chr21_+_11865972 Show fit	0.02	ENSDART00000081676	ubap1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ubiquitin associated protein 1
chr14_-_48348973 Show fit	0.02	ENSDART00000185822	CABZ01080056.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr9_-_2892045 Show fit	0.02	ENSDART00000137201	cdca7a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cell division cycle associated 7a
chr18_-_2433011 Show fit	0.02	ENSDART00000181922 ENSDART00000193276	CR769778.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr3_-_18737126 Show fit	0.02	ENSDART00000055767	e4f1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	E4F transcription factor 1
chr1_-_56213723 Show fit	0.02	ENSDART00000142505 ENSDART00000137237	si:dkey-76b14.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-76b14.2
chr17_+_4368859 Show fit	0.01	ENSDART00000055385	crls1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cardiolipin synthase 1
chr20_+_43379029 Show fit	0.01	ENSDART00000142486 ENSDART00000186486	unc93a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	unc-93 homolog A
chr13_-_9875538 Show fit	0.01	ENSDART00000041609	tm9sf3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane 9 superfamily member 3
chr7_+_31879649 Show fit	0.01	ENSDART00000099789	mybpc3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myosin binding protein C, cardiac
chr22_+_2239974 Show fit	0.00	ENSDART00000141993	znf1144 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger protein 1144
chr12_-_34713888 Show fit	0.00	ENSDART00000153272	bahcc1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	BAH domain and coiled-coil containing 1b
chr7_+_31879986 Show fit	0.00	ENSDART00000138491	mybpc3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	myosin binding protein C, cardiac

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.4	GO:1901890	positive regulation of cell junction assembly(GO:1901890)
0.1	0.3	GO:0002926	tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridine biosynthesis.(GO:0002926)
0.1	0.5	GO:0045721	negative regulation of gluconeogenesis(GO:0045721)
0.0	0.3	GO:0042769	DNA damage response, detection of DNA damage(GO:0042769)
0.0	0.2	GO:0030970	retrograde protein transport, ER to cytosol(GO:0030970)
0.0	0.1	GO:2000055	positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification(GO:2000055)
0.0	0.3	GO:0017196	N-terminal peptidyl-methionine acetylation(GO:0017196)
0.0	0.2	GO:0030579	ubiquitin-dependent SMAD protein catabolic process(GO:0030579)
0.0	0.4	GO:0048026	positive regulation of mRNA splicing, via spliceosome(GO:0048026)
0.0	0.2	GO:0050435	beta-amyloid metabolic process(GO:0050435)
0.0	0.1	GO:0071800	podosome assembly(GO:0071800)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.4	GO:0016600	flotillin complex(GO:0016600)
0.1	0.3	GO:0031417	NatC complex(GO:0031417)
0.0	0.2	GO:0031907	peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907)
0.0	0.3	GO:0033588	Elongator holoenzyme complex(GO:0033588)
0.0	0.3	GO:0034451	centriolar satellite(GO:0034451)
0.0	0.1	GO:0005915	cell-cell adherens junction(GO:0005913) zonula adherens(GO:0005915)
0.0	0.4	GO:0005689	U12-type spliceosomal complex(GO:0005689)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0032184	SUMO polymer binding(GO:0032184)
0.0	0.3	GO:0004596	peptide alpha-N-acetyltransferase activity(GO:0004596)
0.0	0.1	GO:0045294	alpha-catenin binding(GO:0045294)
0.0	0.0	GO:0034416	bisphosphoglycerate phosphatase activity(GO:0034416)
0.0	0.0	GO:0035516	oxidative DNA demethylase activity(GO:0035516)
0.0	0.2	GO:0032050	clathrin heavy chain binding(GO:0032050)
0.0	0.1	GO:0004656	procollagen-proline 4-dioxygenase activity(GO:0004656)
0.0	0.1	GO:0003917	DNA topoisomerase type I activity(GO:0003917)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	REACTOME APOPTOTIC CLEAVAGE OF CELL ADHESION PROTEINS	Genes involved in Apoptotic cleavage of cell adhesion proteins