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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for hnf4g

Z-value: 1.29

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Transcription factors associated with hnf4g

Gene Symbol Gene ID Gene Info
ENSDARG00000071565 hepatocyte nuclear factor 4, gamma

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hnf4gdr11_v1_chr24_-_23671709_23671709-0.799.8e-05Click!

Activity profile of hnf4g motif

Sorted Z-values of hnf4g motif

Promoter Log-likelihood Transcript Gene Gene Info
chr17_-_2590222 7.22 ENSDART00000185711

chr17_-_2573021 6.13 ENSDART00000074181
zona pellucida glycoprotein 3, tandem duplicate 2
chr17_-_2578026 6.02 ENSDART00000065821
zona pellucida glycoprotein 3, tandem duplicate 2
chr17_-_2595736 5.62 ENSDART00000128797
zona pellucida glycoprotein 3, tandem duplicate 2
chr17_-_2584423 5.57 ENSDART00000013506
zona pellucida glycoprotein 3, tandem duplicate 2
chr4_-_77114795 5.50 ENSDART00000144849

chr10_+_19569052 5.39 ENSDART00000058425

chr9_+_8380728 5.03 ENSDART00000133501
si:ch1073-75o15.4
chr22_-_24992532 2.90 ENSDART00000102751
si:dkey-179j5.5
chr16_+_26846495 2.81 ENSDART00000078124
tripartite motif containing 35-29
chr23_+_2740741 2.39 ENSDART00000134938
zgc:114123
chr7_-_24520866 2.33 ENSDART00000077039
fatty acid amide hydrolase 2b
chr13_-_35908275 1.71 ENSDART00000013961
MYCL proto-oncogene, bHLH transcription factor a
chr5_-_30080332 1.69 ENSDART00000140049
beta-carotene oxygenase 2a
chr13_-_35907768 1.65 ENSDART00000147522
MYCL proto-oncogene, bHLH transcription factor a
chr15_-_30857350 1.54 ENSDART00000138988
A kinase (PRKA) anchor protein 1b
chr7_-_26518086 1.53 ENSDART00000058913
eukaryotic translation initiation factor 4A1A
chr14_-_16810401 1.50 ENSDART00000158396
ENSDART00000170758
T cell immune regulator 1, ATPase H+ transporting V0 subunit a3b
chr1_-_12064715 1.39 ENSDART00000143628
ENSDART00000103406
phospholipase A2, group XIIA
chr8_-_49207319 1.38 ENSDART00000022870
family with sequence similarity 110, member A
chr1_-_9485939 1.36 ENSDART00000157814
mical-like 2b
chr5_-_69180587 1.35 ENSDART00000156681
ENSDART00000160753
zgc:171967
chr17_-_6076266 1.31 ENSDART00000171084
epoxide hydrolase 2, cytoplasmic
chr15_+_29728377 1.25 ENSDART00000099958
zgc:153372
chr8_-_1264893 1.22 ENSDART00000190371
cell division cycle 14B
chr5_-_69180227 1.21 ENSDART00000154816
zgc:171967
chr17_-_6076084 1.20 ENSDART00000058890
epoxide hydrolase 2, cytoplasmic
chr7_-_59514547 1.19 ENSDART00000168457
SLX1 homolog B, structure-specific endonuclease subunit
chr7_-_20611039 1.15 ENSDART00000170422
si:dkey-19b23.8
chr7_+_24520518 1.12 ENSDART00000173604
bloodthirsty-related gene family, member 9
chr11_-_18017287 1.06 ENSDART00000155443
glutamine-rich 1
chr6_-_31682135 1.02 ENSDART00000153988
cache domain containing 1
chr11_-_5563498 1.02 ENSDART00000160835
peroxisomal biogenesis factor 11 gamma
chr2_-_42173834 0.97 ENSDART00000098357
ENSDART00000144707
solute carrier family 39 (zinc transporter), member 6
chr3_-_36440705 0.93 ENSDART00000162875
rogdi homolog (Drosophila)
chr11_-_27827442 0.90 ENSDART00000121847
ENSDART00000132018
ENSDART00000145744
ENSDART00000134677
ENSDART00000130800
cleavage stimulation factor, 3' pre-RNA, subunit 1
chr5_-_36597612 0.90 ENSDART00000031270
ENSDART00000122098
ras homolog gene family, member Gc
chr7_+_29115890 0.83 ENSDART00000052345
tnfrsf1a-associated via death domain
chr13_+_32807419 0.79 ENSDART00000085252
PQ loop repeat containing 3
chr19_-_1002959 0.75 ENSDART00000168138
euchromatic histone-lysine N-methyltransferase 2
chr25_-_24240797 0.74 ENSDART00000132790
SPT2 chromatin protein domain containing 1
chr12_-_10567188 0.74 ENSDART00000144283
myoferlin
chr24_+_11083146 0.70 ENSDART00000009473
zinc finger, AN1-type domain 1
chr3_-_27868183 0.70 ENSDART00000185812
4-aminobutyrate aminotransferase
chr20_+_34151670 0.69 ENSDART00000152870
ENSDART00000010329
ENSDART00000145852
actin related protein 2/3 complex, subunit 5B
chr22_-_31517300 0.66 ENSDART00000164799
solute carrier family 6 (neurotransmitter transporter), member 6b
chr4_+_11172964 0.66 ENSDART00000193598
ENSDART00000138661
tetraspanin 11
chr22_-_24738188 0.66 ENSDART00000050238
vitellogenin 1
chr7_+_24496894 0.64 ENSDART00000149994
negative elongation factor complex member A
chr6_-_46474483 0.62 ENSDART00000155761
retinol dehydrogenase 20
chr24_-_36175365 0.57 ENSDART00000065338
PAK1 interacting protein 1
chr21_-_43474012 0.53 ENSDART00000065104
transmembrane protein 185
chr7_-_29115772 0.51 ENSDART00000076386
F-box and leucine-rich repeat protein 8
chr1_-_57172294 0.48 ENSDART00000063774
Rac family small GTPase 1, like
chr15_+_34069746 0.47 ENSDART00000163513
ADP-ribosylation factor-like 4aa
chr8_-_20838342 0.46 ENSDART00000141345
si:ch211-133l5.7
chr15_-_25153352 0.44 ENSDART00000078095
ENSDART00000122184
vacuolar protein sorting 53 homolog (S. cerevisiae)
chr11_+_12860260 0.44 ENSDART00000190410
zinc finger, CCCH-type with G patch domain
chr11_+_19068442 0.43 ENSDART00000171766
membrane associated guanylate kinase, WW and PDZ domain containing 1b
chr6_-_10788065 0.41 ENSDART00000190968
WAS/WASL interacting protein family, member 1b
chr16_+_48460873 0.40 ENSDART00000159902
exostosin glycosyltransferase 1a
chr21_-_5879897 0.38 ENSDART00000184034
ribosomal protein L35
chr24_+_7828097 0.36 ENSDART00000134975
zgc:101569
chr15_+_8192715 0.33 ENSDART00000156442
ENSDART00000077660
mitochondrial intermediate peptidase
chr4_-_170120 0.32 ENSDART00000171333
epidermal growth factor receptor pathway substrate 8
chr10_+_45128375 0.32 ENSDART00000164805
calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 2
chr12_+_33916939 0.31 ENSDART00000149292
tripartite motif containing 8b
chr10_-_24753715 0.28 ENSDART00000192401
integrin-linked kinase
chr11_+_22134540 0.26 ENSDART00000190502
si:dkey-91m3.1
chr6_-_12296170 0.26 ENSDART00000155685
plakophilin 4
chr20_+_29436601 0.26 ENSDART00000136804
formin 1
chr21_-_27272657 0.24 ENSDART00000040754
ENSDART00000175009
MAP/microtubule affinity-regulating kinase 2a
chr20_-_46128590 0.23 ENSDART00000123744
trace amine associated receptor 1b
chr15_+_3825117 0.22 ENSDART00000183315

chr21_-_11054876 0.22 ENSDART00000146576
neural precursor cell expressed, developmentally down-regulated 4-like
chr15_-_2632891 0.22 ENSDART00000081840
claudin j
chr19_+_10536093 0.20 ENSDART00000138706
si:dkey-211g8.1
chr2_-_10877765 0.19 ENSDART00000100607
cell division cycle 7 homolog (S. cerevisiae)
chr24_+_25467465 0.19 ENSDART00000189933
small muscle protein, X-linked
chr22_+_2844865 0.18 ENSDART00000139123
si:dkey-20i20.4
chr15_-_41700406 0.18 ENSDART00000181460
si:ch211-276c2.4
chr19_-_25519310 0.17 ENSDART00000089882
si:dkey-202e17.1
chr22_+_1300587 0.17 ENSDART00000124161
si:ch73-138e16.5
chr20_-_46694573 0.17 ENSDART00000182557

chr18_-_9016161 0.17 ENSDART00000189888
glutamate receptor, metabotropic 3
chr7_+_17229282 0.16 ENSDART00000097982
solute carrier family 6 (neurotransmitter transporter), member 5
chr5_-_62317496 0.16 ENSDART00000180089
zgc:85789
chr23_-_43595956 0.16 ENSDART00000162186
itchy E3 ubiquitin protein ligase b
chr15_+_864761 0.14 ENSDART00000174813
ENSDART00000192053
si:dkey-7i4.12
si:dkey-7i4.10
chr15_-_16012963 0.14 ENSDART00000144138
HNF1 homeobox Ba
chr22_-_24818066 0.13 ENSDART00000143443
vitellogenin 6
chr6_-_56103718 0.13 ENSDART00000191002
glucosaminyl (N-acetyl) transferase family member 7
chr9_-_1986014 0.12 ENSDART00000142842
homeobox D12a
chr25_+_22216723 0.12 ENSDART00000051291
hexosaminidase A (alpha polypeptide)
chr4_+_7888047 0.12 ENSDART00000104676
calcium/calmodulin-dependent protein kinase 1Da
chr10_-_41400049 0.11 ENSDART00000009838
glycerol-3-phosphate acyltransferase 4
chr7_-_52417060 0.11 ENSDART00000148579
myocardial zonula adherens protein
chr4_+_53145525 0.11 ENSDART00000166960
si:dkey-8o9.2
chr20_-_49657134 0.11 ENSDART00000151248
collagen, type XII, alpha 1b
chr9_+_1138802 0.11 ENSDART00000191130
ENSDART00000187308
solute carrier family 15 (oligopeptide transporter), member 1a
chr16_+_11623956 0.10 ENSDART00000137788
chemokine (C-X-C motif) receptor 3, tandem duplicate 1
chr5_-_50640171 0.10 ENSDART00000183353
multiple C2 domains, transmembrane 1a
chr8_+_23390844 0.10 ENSDART00000184556
si:dkey-16n15.6
chr21_-_31290582 0.09 ENSDART00000065362
carbonic anhydrase IV c
chr15_-_31366742 0.09 ENSDART00000125585
odorant receptor, family D, subfamily 111, member 3
chr8_+_47188154 0.09 ENSDART00000137319
si:dkeyp-100a1.6
chr13_-_50309969 0.09 ENSDART00000191597

chr5_+_37069605 0.09 ENSDART00000161977
si:dkeyp-110c7.4
chr9_+_48415043 0.08 ENSDART00000159930
low density lipoprotein receptor-related protein 2a
chr14_-_25078569 0.08 ENSDART00000172802
ENSDART00000173345
ENSDART00000135004
matrin 3-like 1.1
chr23_+_19790962 0.08 ENSDART00000142228
filamin A, alpha (actin binding protein 280)
chr2_+_11670270 0.07 ENSDART00000100524
finTRIM family, member 1
chr22_+_19407531 0.07 ENSDART00000141060
si:dkey-78l4.2
chr6_+_27339962 0.06 ENSDART00000193726
kelch-like family member 30
chr9_-_44953664 0.06 ENSDART00000188558
ENSDART00000185210
villin 1
chr19_+_1003332 0.06 ENSDART00000081779
zinc finger, DHHC-type containing 3b
chr24_+_1294176 0.06 ENSDART00000106637
si:ch73-134f24.1
chr13_+_18520738 0.05 ENSDART00000113952
toll-like receptor 4a, like
chr25_+_29472361 0.05 ENSDART00000154857
interleukin 17 receptor E-like
chr6_+_52877147 0.05 ENSDART00000174370
odorant receptor, family H, subfamily 137, member 8
chr7_-_29341233 0.05 ENSDART00000140938
ENSDART00000147251
transient receptor potential cation channel, subfamily M, member 1a
chr9_+_1138323 0.05 ENSDART00000190352
ENSDART00000190387
solute carrier family 15 (oligopeptide transporter), member 1a
chr22_-_20376488 0.05 ENSDART00000140187
zinc finger and BTB domain containing 7a
chr5_-_65319387 0.04 ENSDART00000164649
collagen, type XXVII, alpha 1b
chr14_+_989733 0.04 ENSDART00000161487
ENSDART00000127317
si:ch73-308l14.2
chr11_+_30729745 0.04 ENSDART00000103270
solute carrier family 22 (organic anion transporter), member 7a
chr1_-_57129179 0.04 ENSDART00000157226
ENSDART00000152469
si:ch73-94k4.2
chr7_+_39738505 0.04 ENSDART00000004365
transcriptional adaptor 2B
chr17_+_20174044 0.03 ENSDART00000156028
si:ch211-248a14.8
chr6_-_607063 0.03 ENSDART00000189900
lectin, galactoside-binding, soluble, 2b
chr4_+_38981587 0.02 ENSDART00000142713
si:dkey-66k12.3
chr4_+_57099307 0.02 ENSDART00000131654
si:ch211-238e22.2
chr15_-_31401361 0.02 ENSDART00000124360
odorant receptor, family D, subfamily 111, member 7
chr7_+_30823749 0.01 ENSDART00000085661
amyloid beta (A4) precursor protein-binding, family A, member 2b
chr8_+_14778292 0.00 ENSDART00000089971
calcium channel, voltage-dependent, R type, alpha 1E subunit a
chr12_-_44122412 0.00 ENSDART00000169094
si:ch73-329n5.3

Network of associatons between targets according to the STRING database.

First level regulatory network of hnf4g

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.4 23.4 GO:0007339 binding of sperm to zona pellucida(GO:0007339) egg coat formation(GO:0035803) regulation of acrosome reaction(GO:0060046) positive regulation of acrosome reaction(GO:2000344)
0.4 1.3 GO:0018872 arsonoacetate metabolic process(GO:0018872)
0.3 2.4 GO:0033206 meiotic cytokinesis(GO:0033206) polar body extrusion after meiotic divisions(GO:0040038)
0.2 0.7 GO:0010847 regulation of chromatin assembly(GO:0010847)
0.2 1.7 GO:0046247 carotene metabolic process(GO:0016119) carotene catabolic process(GO:0016121) terpene metabolic process(GO:0042214) terpene catabolic process(GO:0046247)
0.2 1.0 GO:0016559 peroxisome fission(GO:0016559)
0.1 0.7 GO:0009450 gamma-aminobutyric acid catabolic process(GO:0009450)
0.1 0.8 GO:0051570 regulation of histone H3-K9 methylation(GO:0051570)
0.1 1.2 GO:0071850 mitotic cell cycle arrest(GO:0071850)
0.1 1.0 GO:0071578 zinc II ion transmembrane import(GO:0071578)
0.1 1.5 GO:0051452 vacuolar acidification(GO:0007035) pH reduction(GO:0045851) intracellular pH reduction(GO:0051452)
0.1 1.5 GO:0010738 regulation of protein kinase A signaling(GO:0010738)
0.1 2.5 GO:0060841 venous blood vessel development(GO:0060841)
0.1 0.4 GO:0007175 negative regulation of epidermal growth factor-activated receptor activity(GO:0007175)
0.0 0.6 GO:0034244 negative regulation of DNA-templated transcription, elongation(GO:0032785) negative regulation of transcription elongation from RNA polymerase II promoter(GO:0034244)
0.0 0.3 GO:0035989 tendon development(GO:0035989)
0.0 1.5 GO:0002183 cytoplasmic translational initiation(GO:0002183)
0.0 0.2 GO:0031174 lifelong otolith mineralization(GO:0031174)
0.0 0.9 GO:0016601 Rac protein signal transduction(GO:0016601)
0.0 0.7 GO:0007520 myoblast fusion(GO:0007520)
0.0 0.2 GO:2000650 negative regulation of sodium ion transmembrane transporter activity(GO:2000650)
0.0 1.4 GO:0036269 swimming behavior(GO:0036269)
0.0 0.3 GO:0032467 positive regulation of cytokinesis(GO:0032467)
0.0 0.5 GO:0043153 entrainment of circadian clock by photoperiod(GO:0043153)
0.0 0.1 GO:0021571 rhombomere 5 development(GO:0021571) rhombomere 6 development(GO:0021572)
0.0 0.4 GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463)
0.0 0.8 GO:0032355 response to estradiol(GO:0032355)
0.0 0.2 GO:0043092 amino acid import(GO:0043090) L-amino acid import(GO:0043092)
0.0 0.2 GO:0006857 oligopeptide transport(GO:0006857)
0.0 0.7 GO:0072348 sulfur compound transport(GO:0072348)
0.0 1.0 GO:0045010 actin nucleation(GO:0045010)
0.0 0.8 GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling(GO:0043123)
0.0 0.2 GO:0002430 complement receptor mediated signaling pathway(GO:0002430)
0.0 0.4 GO:0015012 heparan sulfate proteoglycan biosynthetic process(GO:0015012)
0.0 0.2 GO:0000727 double-strand break repair via break-induced replication(GO:0000727)
0.0 1.0 GO:0000724 double-strand break repair via homologous recombination(GO:0000724)
0.0 0.1 GO:0070293 renal absorption(GO:0070293)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.9 GO:0043291 RAVE complex(GO:0043291)
0.2 1.2 GO:0033557 Slx1-Slx4 complex(GO:0033557)
0.2 1.5 GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain(GO:0000220)
0.1 1.0 GO:0005779 integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231)
0.1 0.4 GO:0000938 GARP complex(GO:0000938)
0.1 0.6 GO:0032021 NELF complex(GO:0032021)
0.1 23.4 GO:0031012 extracellular matrix(GO:0031012)
0.0 0.9 GO:0005849 mRNA cleavage factor complex(GO:0005849)
0.0 0.7 GO:0005885 Arp2/3 protein complex(GO:0005885)
0.0 0.2 GO:0043034 costamere(GO:0043034)
0.0 2.5 GO:0042579 peroxisome(GO:0005777) microbody(GO:0042579)
0.0 1.2 GO:0000922 spindle pole(GO:0000922)
0.0 0.1 GO:0032433 filopodium tip(GO:0032433)
0.0 0.6 GO:0005811 lipid particle(GO:0005811)
0.0 3.2 GO:0030659 cytoplasmic vesicle membrane(GO:0030659)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
2.1 23.4 GO:0035804 structural constituent of egg coat(GO:0035804)
0.8 2.5 GO:0004301 epoxide hydrolase activity(GO:0004301)
0.4 1.3 GO:0030791 arsenite methyltransferase activity(GO:0030791) methylarsonite methyltransferase activity(GO:0030792)
0.2 1.2 GO:0008821 crossover junction endodeoxyribonuclease activity(GO:0008821)
0.2 1.7 GO:0010436 beta-carotene 15,15'-monooxygenase activity(GO:0003834) carotenoid dioxygenase activity(GO:0010436)
0.1 0.7 GO:0001042 RNA polymerase I core binding(GO:0001042)
0.1 0.8 GO:0005068 transmembrane receptor protein tyrosine kinase adaptor activity(GO:0005068)
0.1 0.8 GO:0045735 nutrient reservoir activity(GO:0045735)
0.1 0.4 GO:0050508 glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity(GO:0050508)
0.1 1.5 GO:0051117 ATPase binding(GO:0051117)
0.1 1.5 GO:0034237 protein kinase A regulatory subunit binding(GO:0034237)
0.0 0.8 GO:0002039 p53 binding(GO:0002039)
0.0 1.0 GO:0005385 zinc ion transmembrane transporter activity(GO:0005385)
0.0 8.0 GO:0030246 carbohydrate binding(GO:0030246)
0.0 0.2 GO:0019871 sodium channel inhibitor activity(GO:0019871)
0.0 0.1 GO:0016494 C-X-C chemokine receptor activity(GO:0016494)
0.0 2.2 GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides(GO:0016811)
0.0 0.8 GO:0005343 organic acid:sodium symporter activity(GO:0005343)
0.0 0.7 GO:0008483 transaminase activity(GO:0008483)
0.0 0.2 GO:0001641 group II metabotropic glutamate receptor activity(GO:0001641)
0.0 0.2 GO:0071916 dipeptide transporter activity(GO:0042936) dipeptide transmembrane transporter activity(GO:0071916)
0.0 1.5 GO:0003724 RNA helicase activity(GO:0003724)
0.0 1.2 GO:0008138 protein tyrosine/serine/threonine phosphatase activity(GO:0008138)
0.0 0.1 GO:0004563 beta-N-acetylhexosaminidase activity(GO:0004563)
0.0 0.1 GO:0008329 lipopolysaccharide receptor activity(GO:0001875) signaling pattern recognition receptor activity(GO:0008329)
0.0 0.2 GO:0004875 complement receptor activity(GO:0004875)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.8 PID TRAIL PATHWAY TRAIL signaling pathway
0.0 1.2 PID PLK1 PATHWAY PLK1 signaling events
0.0 0.3 PID ECADHERIN KERATINOCYTE PATHWAY E-cadherin signaling in keratinocytes
0.0 0.7 PID VEGFR1 2 PATHWAY Signaling events mediated by VEGFR1 and VEGFR2
0.0 0.3 PID AVB3 OPN PATHWAY Osteopontin-mediated events
0.0 0.6 PID BARD1 PATHWAY BARD1 signaling events
0.0 0.8 PID AR TF PATHWAY Regulation of Androgen receptor activity

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.4 REACTOME ACYL CHAIN REMODELLING OF PI Genes involved in Acyl chain remodelling of PI
0.1 0.8 REACTOME EXTRINSIC PATHWAY FOR APOPTOSIS Genes involved in Extrinsic Pathway for Apoptosis
0.1 1.0 REACTOME ZINC TRANSPORTERS Genes involved in Zinc transporters
0.0 0.7 REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION Genes involved in GABA synthesis, release, reuptake and degradation
0.0 0.9 REACTOME PROCESSING OF INTRONLESS PRE MRNAS Genes involved in Processing of Intronless Pre-mRNAs
0.0 0.8 REACTOME RNA POL I TRANSCRIPTION INITIATION Genes involved in RNA Polymerase I Transcription Initiation
0.0 0.2 REACTOME CLASS C 3 METABOTROPIC GLUTAMATE PHEROMONE RECEPTORS Genes involved in Class C/3 (Metabotropic glutamate/pheromone receptors)
0.0 0.1 REACTOME HYALURONAN UPTAKE AND DEGRADATION Genes involved in Hyaluronan uptake and degradation
0.0 0.2 REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS Genes involved in Na+/Cl- dependent neurotransmitter transporters