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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for hmx1+hmx3b

Z-value: 0.24

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Transcription factors associated with hmx1+hmx3b

Gene Symbol Gene ID Gene Info
hmx1
ENSDARG00000095651 H6 family homeobox 1
hmx3b
ENSDARG00000096716 H6 family homeobox 3b
hmx1
ENSDARG00000109725 H6 family homeobox 1
hmx1
ENSDARG00000111765 H6 family homeobox 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hmx1dr11_v1_chr1_-_40914752_409147520.727.5e-04Click!
hmx3bdr11_v1_chr12_-_49154934_491549340.653.6e-03Click!

Activity profile of hmx1+hmx3b motif

Sorted Z-values of hmx1+hmx3b motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr25_-_10503043 0.63 ENSDART00000155404
cox8b
cytochrome c oxidase subunit 8b
chr3_+_60721342 0.59 ENSDART00000157772
foxj1a
forkhead box J1a
chr6_-_40352215 0.56 ENSDART00000103992
ttll3
tubulin tyrosine ligase-like family, member 3
chr19_+_43604256 0.43 ENSDART00000151080
ENSDART00000110305
si:ch211-199g17.9
si:ch211-199g17.9
chr8_-_23194408 0.43 ENSDART00000141090
si:ch211-196c10.15
si:ch211-196c10.15
chr11_-_7261717 0.39 ENSDART00000128959
zgc:113223
zgc:113223
chr25_+_3326885 0.34 ENSDART00000104866
ldhbb
lactate dehydrogenase Bb
chr16_-_6391275 0.34 ENSDART00000060550
ndufb9
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9
chr4_-_76154252 0.30 ENSDART00000161269
BX957252.1

chr17_+_10593398 0.30 ENSDART00000168897
ENSDART00000193989
ENSDART00000191664
ENSDART00000167188
mapkbp1
mitogen-activated protein kinase binding protein 1
chr21_+_26657404 0.29 ENSDART00000129035
ENSDART00000186550
prdx5
peroxiredoxin 5
chr21_-_14803366 0.26 ENSDART00000190872
si:dkey-11o18.5
si:dkey-11o18.5
chr17_+_7510220 0.26 ENSDART00000192648
klhl10b.1
kelch-like family member 10b, tandem duplicate 1
chr12_+_2446837 0.26 ENSDART00000112032
ARHGAP22
si:dkey-191m6.4
chr6_-_37422841 0.26 ENSDART00000138351
cth
cystathionase (cystathionine gamma-lyase)
chr1_+_52929185 0.25 ENSDART00000147683
inpp4b
inositol polyphosphate-4-phosphatase type II B
chr19_-_6239248 0.24 ENSDART00000014127
pou2f2a
POU class 2 homeobox 2a
chr25_+_3327071 0.22 ENSDART00000136131
ENSDART00000133243
ldhbb
lactate dehydrogenase Bb
chr7_+_71683853 0.22 ENSDART00000163002
emilin2b
elastin microfibril interfacer 2b
chr13_-_50108337 0.21 ENSDART00000133308
nid1a
nidogen 1a
chr9_-_31108285 0.21 ENSDART00000003193
gpr183a
G protein-coupled receptor 183a
chr15_-_1822548 0.18 ENSDART00000082026
ENSDART00000180230
mmp28
matrix metallopeptidase 28
chr14_-_33454595 0.18 ENSDART00000109615
ENSDART00000173267
ENSDART00000185737
ENSDART00000190989
tmem255a
transmembrane protein 255A
chr1_-_56032619 0.17 ENSDART00000143793
c3a.4
complement component c3a, duplicate 4
chr15_-_14884332 0.16 ENSDART00000165237
si:ch211-24o8.4
si:ch211-24o8.4
chr20_-_5052786 0.16 ENSDART00000138818
ENSDART00000181655
ENSDART00000164274
arid1b
AT rich interactive domain 1B (SWI1-like)
chr8_+_23194212 0.16 ENSDART00000028946
ENSDART00000186842
ENSDART00000137815
ENSDART00000136914
ENSDART00000144855
ENSDART00000182689
tpd52l2a
tumor protein D52-like 2a
chr18_+_9171778 0.15 ENSDART00000101192
sema3d
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D
chr17_+_6563307 0.15 ENSDART00000156454
adgrf3a
adhesion G protein-coupled receptor F3a
chr4_-_72609735 0.15 ENSDART00000174299
ENSDART00000159227
si:cabz01054394.6
si:cabz01054394.6
chr15_+_1134870 0.15 ENSDART00000155392
p2ry13
purinergic receptor P2Y13
chr5_-_42272517 0.14 ENSDART00000137692
ENSDART00000164363
si:ch211-207c6.2
si:ch211-207c6.2
chr22_+_1911269 0.13 ENSDART00000164158
ENSDART00000168205
znf1156
zinc finger protein 1156
chr10_+_40598791 0.13 ENSDART00000131895
taar17a
trace amine associated receptor 17a
chr18_+_11970987 0.13 ENSDART00000144111
si:dkeyp-2c8.3
si:dkeyp-2c8.3
chr23_-_18913032 0.13 ENSDART00000136678
si:ch211-209j10.6
si:ch211-209j10.6
chr6_-_40697585 0.12 ENSDART00000113196
si:ch211-157b11.14
si:ch211-157b11.14
chr14_-_7137808 0.12 ENSDART00000054803
trpt1
tRNA phosphotransferase 1
chr4_-_43388943 0.12 ENSDART00000150796
si:dkey-29j8.2
si:dkey-29j8.2
chr5_+_32835219 0.12 ENSDART00000140832
ENSDART00000186055
si:ch211-208h16.4
si:ch211-208h16.4
chr20_+_28861435 0.11 ENSDART00000142678
slc10a1
solute carrier family 10 (sodium/bile acid cotransporter), member 1
chr2_+_24781026 0.11 ENSDART00000145692
pde4ca
phosphodiesterase 4C, cAMP-specific a
chr24_-_27400017 0.09 ENSDART00000145829
ccl34b.1
chemokine (C-C motif) ligand 34b, duplicate 1
chr4_-_18741942 0.08 ENSDART00000145747
ENSDART00000066980
ENSDART00000186518
atxn10
ataxin 10
chr13_+_30874153 0.08 ENSDART00000112380
ENSDART00000189016
ENSDART00000134809
ercc6
excision repair cross-complementation group 6
chr14_-_9128919 0.07 ENSDART00000108641
sh2d1ab
SH2 domain containing 1A duplicate b
chr25_+_18965430 0.07 ENSDART00000169742
tdg.1
thymine DNA glycosylase, tandem duplicate 1
chr2_+_54798689 0.07 ENSDART00000183426
twsg1a
twisted gastrulation BMP signaling modulator 1a
chr6_+_22326624 0.07 ENSDART00000020333
rae1
ribonucleic acid export 1
chr5_+_32009542 0.07 ENSDART00000182025
ENSDART00000179879
scai
suppressor of cancer cell invasion
chr11_+_30244356 0.07 ENSDART00000036050
ENSDART00000150080
rs1a
retinoschisin 1a
chr12_+_24342303 0.06 ENSDART00000111239
nrxn1a
neurexin 1a
chr10_-_39153959 0.06 ENSDART00000150193
ENSDART00000111362
slc37a4b
solute carrier family 37 (glucose-6-phosphate transporter), member 4b
chr7_+_32722227 0.06 ENSDART00000126565
si:ch211-150g13.3
si:ch211-150g13.3
chr20_+_28861629 0.06 ENSDART00000187274
ENSDART00000047826
slc10a1
solute carrier family 10 (sodium/bile acid cotransporter), member 1
chr23_+_9353552 0.06 ENSDART00000163298
BX511246.1

chr21_-_14966718 0.06 ENSDART00000151200
mmp17a
matrix metallopeptidase 17a
chr24_-_1021318 0.05 ENSDART00000181403
ralaa
v-ral simian leukemia viral oncogene homolog Aa (ras related)
chr8_-_13013123 0.05 ENSDART00000147802
dennd2da
DENN/MADD domain containing 2Da
chr16_-_15988320 0.05 ENSDART00000160883
CABZ01060453.1

chrM_+_8130 0.05 ENSDART00000093609
mt-co2
cytochrome c oxidase II, mitochondrial
chr8_+_24861264 0.05 ENSDART00000099607
slc6a17
solute carrier family 6 (neutral amino acid transporter), member 17
chr11_-_37691449 0.04 ENSDART00000185340
zgc:158258
zgc:158258
chr19_+_11217279 0.04 ENSDART00000181859
si:ch73-109i22.2
si:ch73-109i22.2
chr13_+_30169681 0.04 ENSDART00000138326
pald1b
phosphatase domain containing, paladin 1b
chr22_-_4649238 0.04 ENSDART00000125302
fbn2b
fibrillin 2b
chr8_-_19649617 0.04 ENSDART00000189033
fam78bb
family with sequence similarity 78, member B b
chr5_+_11290851 0.04 ENSDART00000180408
CABZ01077124.1

chr24_+_38301080 0.04 ENSDART00000105672
mybpc2b
myosin binding protein C, fast type b
chr24_+_26134209 0.04 ENSDART00000038824
tmtopsb
teleost multiple tissue opsin b
chr1_-_22512063 0.03 ENSDART00000031546
ENSDART00000190987
chrna6
cholinergic receptor, nicotinic, alpha 6
chr10_-_39154594 0.03 ENSDART00000148825
slc37a4b
solute carrier family 37 (glucose-6-phosphate transporter), member 4b
chr14_+_14568437 0.03 ENSDART00000164749
pcdh20
protocadherin 20
chr10_+_16069987 0.03 ENSDART00000043936
megf10
multiple EGF-like-domains 10
chr18_-_33080454 0.03 ENSDART00000191907
v2ra18
vomeronasal 2 receptor, a18
chr5_+_24287927 0.03 ENSDART00000143563
zdhhc23a
zinc finger, DHHC-type containing 23a
chr21_-_37973819 0.03 ENSDART00000133405
ripply1
ripply transcriptional repressor 1
chr6_-_6448519 0.02 ENSDART00000180157
ENSDART00000191112
si:ch211-194e18.2
si:ch211-194e18.2
chr20_+_37295006 0.02 ENSDART00000153137
cx23
connexin 23
chr4_+_20576857 0.02 ENSDART00000125340
BX248410.2

chr7_+_17443567 0.02 ENSDART00000060383
nitr2b
novel immune-type receptor 2b
chr2_-_16380283 0.02 ENSDART00000149992
si:dkey-231j24.3
si:dkey-231j24.3
chr8_+_20825987 0.02 ENSDART00000133309
si:ch211-133l5.4
si:ch211-133l5.4
chr20_-_34750045 0.01 ENSDART00000186130
znf395b
zinc finger protein 395b
chr9_-_25425381 0.01 ENSDART00000129522
acvr2aa
activin A receptor type 2Aa
chr22_-_6988102 0.01 ENSDART00000185618
fgfr1bl
fibroblast growth factor receptor 1b, like
chr10_+_35439952 0.01 ENSDART00000006284
hhla2a.2
HERV-H LTR-associating 2a, tandem duplicate 2
chr6_-_33075576 0.00 ENSDART00000154017
si:dkey-170g13.2
si:dkey-170g13.2
chr3_+_22327738 0.00 ENSDART00000055675
gh1
growth hormone 1
chr21_+_21906671 0.00 ENSDART00000016916
gria4b
glutamate receptor, ionotropic, AMPA 4b
chr13_+_23176330 0.00 ENSDART00000168351
sorbs1
sorbin and SH3 domain containing 1
chr5_+_19165949 0.00 ENSDART00000140710
unc13ba
unc-13 homolog Ba (C. elegans)

Network of associatons between targets according to the STRING database.

First level regulatory network of hmx1+hmx3b

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 GO:0060296 regulation of cilium movement involved in cell motility(GO:0060295) regulation of cilium beat frequency involved in ciliary motility(GO:0060296) regulation of cilium-dependent cell motility(GO:1902019)
0.1 0.2 GO:0036336 dendritic cell chemotaxis(GO:0002407) dendritic cell migration(GO:0036336)
0.0 0.3 GO:0019344 homoserine metabolic process(GO:0009092) cysteine biosynthetic process via cystathionine(GO:0019343) cysteine biosynthetic process(GO:0019344) transsulfuration(GO:0019346)
0.0 0.2 GO:0002164 larval development(GO:0002164) larval heart development(GO:0007508)
0.0 0.4 GO:0070193 synaptonemal complex assembly(GO:0007130) synaptonemal complex organization(GO:0070193)
0.0 0.0 GO:0015824 proline transport(GO:0015824)
0.0 0.3 GO:0006120 mitochondrial electron transport, NADH to ubiquinone(GO:0006120)
0.0 0.0 GO:0003250 cell proliferation involved in heart valve morphogenesis(GO:0003249) regulation of cell proliferation involved in heart valve morphogenesis(GO:0003250) endocardial cell development(GO:0060958) cell proliferation involved in heart valve development(GO:2000793)
0.0 0.7 GO:0006119 oxidative phosphorylation(GO:0006119)
0.0 0.2 GO:0015721 bile acid and bile salt transport(GO:0015721)
0.0 0.1 GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation(GO:0006388)
0.0 0.3 GO:0042744 hydrogen peroxide catabolic process(GO:0042744)
0.0 0.1 GO:0006283 transcription-coupled nucleotide-excision repair(GO:0006283)
0.0 0.1 GO:0000972 transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery(GO:0000972)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 GO:0005782 peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907)
0.0 0.7 GO:0045277 respiratory chain complex IV(GO:0045277)
0.0 0.2 GO:0035060 brahma complex(GO:0035060)
0.0 0.4 GO:0000795 synaptonemal complex(GO:0000795)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0070735 protein-glycine ligase activity(GO:0070735) tubulin-glycine ligase activity(GO:0070738)
0.1 0.6 GO:0004459 L-lactate dehydrogenase activity(GO:0004459)
0.0 0.3 GO:0008379 thioredoxin peroxidase activity(GO:0008379)
0.0 0.3 GO:0016316 phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity(GO:0016316)
0.0 0.2 GO:0008142 oxysterol binding(GO:0008142)
0.0 0.2 GO:0008508 bile acid:sodium symporter activity(GO:0008508)
0.0 0.7 GO:0016676 cytochrome-c oxidase activity(GO:0004129) heme-copper terminal oxidase activity(GO:0015002) oxidoreductase activity, acting on a heme group of donors(GO:0016675) oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor(GO:0016676)
0.0 0.3 GO:0016846 carbon-sulfur lyase activity(GO:0016846)
0.0 0.2 GO:0038191 neuropilin binding(GO:0038191)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 REACTOME RECYCLING OF BILE ACIDS AND SALTS Genes involved in Recycling of bile acids and salts
0.0 0.1 REACTOME P2Y RECEPTORS Genes involved in P2Y receptors
0.0 0.3 REACTOME SULFUR AMINO ACID METABOLISM Genes involved in Sulfur amino acid metabolism