Project

PRJNA438478: RNAseq of wild type zebrafish germline

Navigation
Downloads

Results for hmga1a

Z-value: 0.52

Motif logo

Transcription factors associated with hmga1a

Gene Symbol Gene ID Gene Info
ENSDARG00000028335 high mobility group AT-hook 1a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hmga1adr11_v1_chr23_-_3759692_37596920.447.1e-02Click!

Activity profile of hmga1a motif

Sorted Z-values of hmga1a motif

Promoter Log-likelihood Transcript Gene Gene Info
chr23_-_45439903 0.77 ENSDART00000170729
nephronectin
chr16_-_29557338 0.60 ENSDART00000058888
HORMA domain containing 1
chr17_-_5769196 0.53 ENSDART00000113885
si:dkey-100n19.2
chr7_-_33130552 0.53 ENSDART00000127006
meiosis-specific nuclear structural 1
chr16_-_42969598 0.51 ENSDART00000156011
si:ch211-135n15.3
chr5_+_71924175 0.51 ENSDART00000115182
ENSDART00000170215
nucleoporin 214
chr10_-_26202766 0.51 ENSDART00000136393
FH2 domain containing 3
chr14_-_34513103 0.49 ENSDART00000136306
zgc:194246
chr19_-_20403507 0.46 ENSDART00000052603
ENSDART00000137590
deleted in azoospermia-like
chr3_+_62161184 0.41 ENSDART00000090370
ENSDART00000192665
NADPH oxidase organizer 1a
chr16_+_2433696 0.38 ENSDART00000182803

chr10_+_44584614 0.37 ENSDART00000163523
seizure related 6 homolog (mouse)-like
chr11_-_16975190 0.35 ENSDART00000122222
succinate-CoA ligase, GDP-forming, beta subunit
chr4_+_26053044 0.34 ENSDART00000039877
si:ch211-244b2.1
chr17_+_31739418 0.33 ENSDART00000155073
ENSDART00000156180
Rho GTPase activating protein 5
chr9_+_55455801 0.31 ENSDART00000144757
ENSDART00000186543
matrix-remodelling associated 5b
chr4_+_13568469 0.30 ENSDART00000171235
ENSDART00000136152
calumenin a
chr22_+_23359369 0.29 ENSDART00000170886
DENN/MADD domain containing 1B
chr25_+_581227 0.29 ENSDART00000126863
neural EGFL like 2a
chr11_+_37095165 0.27 ENSDART00000124997
caspase recruitment domain family, member 19
chr24_-_15159658 0.27 ENSDART00000142473
rotatin
chr19_+_29808699 0.26 ENSDART00000051799
ENSDART00000164205
histone deacetylase 1
chr10_+_6121558 0.26 ENSDART00000166799
ENSDART00000157947
talin 1
chr12_-_10409961 0.26 ENSDART00000149521
ENSDART00000052001
eukaryotic elongation factor 2 kinase
chr10_+_20364009 0.25 ENSDART00000186139
ENSDART00000080395
golgin A7
chr19_+_29808471 0.25 ENSDART00000186428
histone deacetylase 1
chr25_-_34670413 0.24 ENSDART00000073440
DnaJ heat shock protein family (Hsp40) member A4
chr4_+_17245005 0.24 ENSDART00000027645
cancer susceptibility candidate 1
chr4_+_17245217 0.23 ENSDART00000184215
ENSDART00000110908
cancer susceptibility candidate 1
chr25_+_15287036 0.23 ENSDART00000147572
homeodomain interacting protein kinase 3a
chr6_-_2222707 0.22 ENSDART00000022179
protein kinase, AMP-activated, gamma 1 non-catalytic subunit
chr1_-_14258409 0.22 ENSDART00000079359
phosphodiesterase 5A, cGMP-specific, a
chr8_+_49975160 0.22 ENSDART00000156403
ENSDART00000080135
glutamine--fructose-6-phosphate transaminase 1
chr7_+_72469724 0.21 ENSDART00000187629
HECT domain E3 ubiquitin protein ligase 4
chr23_+_45512825 0.20 ENSDART00000064846
PRELI domain containing 1b
chr13_-_41917050 0.20 ENSDART00000110549
CDGSH iron sulfur domain 1
chr24_-_16975960 0.20 ENSDART00000180687
kelch-like family member 15
chr24_-_35534273 0.19 ENSDART00000026578
ubiquitin-conjugating enzyme E2 variant 2
chr25_-_13789955 0.19 ENSDART00000167742
ENSDART00000165116
ENSDART00000171461
cytoskeleton associated protein 5
chr15_-_33807758 0.18 ENSDART00000158445
PDS5 cohesin associated factor B
chr4_+_73872345 0.18 ENSDART00000174075

chr22_-_16416882 0.17 ENSDART00000062749
cathepsin 12
chr16_-_12236362 0.17 ENSDART00000114759
lysophosphatidylcholine acyltransferase 3
chr22_-_784110 0.17 ENSDART00000061775
retinoblastoma binding protein 5
chr3_-_34136368 0.17 ENSDART00000136900
ENSDART00000186125
caseinolytic mitochondrial matrix peptidase proteolytic subunit
chr16_-_26232411 0.17 ENSDART00000139355
Rho guanine nucleotide exchange factor (GEF) 1b
chr1_+_44360973 0.17 ENSDART00000167568
si:ch211-165a10.5
chr9_+_25568839 0.16 ENSDART00000177342
zinc finger E-box binding homeobox 2a
chr11_+_5817202 0.16 ENSDART00000126084
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 3
chr23_+_38940700 0.16 ENSDART00000065331
spalt-like transcription factor 4
chr14_+_35237613 0.15 ENSDART00000163465
early B cell factor 3a
chr23_-_27633730 0.15 ENSDART00000103639
ADP-ribosylation factor 3a
chr3_+_26019426 0.14 ENSDART00000135389
ENSDART00000182411
FAD-dependent oxidoreductase domain containing 2
chr6_+_30533504 0.13 ENSDART00000155842
WWC family member 3
chr25_-_13549577 0.12 ENSDART00000166772
anoctamin 10b
chr7_-_22956889 0.12 ENSDART00000101447
TNF superfamily member 10, like
chr8_-_49725430 0.12 ENSDART00000135675
G kinase anchoring protein 1
chr14_+_26566936 0.12 ENSDART00000173056
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
chr17_+_51520073 0.12 ENSDART00000189646
ENSDART00000170951
ENSDART00000189492
peroxidasin
chr22_-_10580194 0.11 ENSDART00000105848
si:dkey-42i9.7
chr12_+_46841918 0.11 ENSDART00000157464
adenosine kinase b
chr8_+_42917515 0.11 ENSDART00000021715
solute carrier family 23 (ascorbic acid transporter), member 2
chr1_+_41690402 0.11 ENSDART00000177298
F-box protein 41
chr14_-_38827442 0.11 ENSDART00000160000
spindle apparatus coiled-coil protein 1
chr9_-_27738110 0.10 ENSDART00000060347
crystallin, gamma S2
chr17_-_23221504 0.10 ENSDART00000156411
family with sequence similarity 98, member A
chr7_+_33130639 0.10 ENSDART00000142450
ENSDART00000173967
ENSDART00000173832
zgc:153219
si:ch211-194p6.7
chr1_-_54971968 0.09 ENSDART00000140016
KH-type splicing regulatory protein
chr14_-_38828057 0.09 ENSDART00000186088
spindle apparatus coiled-coil protein 1
chr6_-_39518489 0.09 ENSDART00000185446
activating transcription factor 1
chr7_+_19615056 0.08 ENSDART00000124752
ENSDART00000190297
si:ch211-212k18.15
chr19_-_45650994 0.08 ENSDART00000163504
trichorhinophalangeal syndrome I
chr25_-_17910714 0.08 ENSDART00000191586
aryl hydrocarbon receptor nuclear translocator-like 1a
chr13_+_42406883 0.08 ENSDART00000084354
cytoplasmic polyadenylation element binding protein 3
chr1_-_54972170 0.08 ENSDART00000150548
ENSDART00000038330
KH-type splicing regulatory protein
chr24_-_31090948 0.08 ENSDART00000176799
holocytochrome c synthase b
chr6_-_7123210 0.08 ENSDART00000041304
autophagy related 3
chr6_-_48094342 0.08 ENSDART00000137458
solute carrier family 2 (facilitated glucose transporter), member 1b
chr4_+_19127973 0.08 ENSDART00000136611
si:dkey-21o22.2
chr7_-_69521481 0.08 ENSDART00000148465
solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
chr3_+_36515376 0.07 ENSDART00000161652
si:dkeyp-72e1.9
chr24_+_39137001 0.07 ENSDART00000181086
ENSDART00000183724
ENSDART00000193466
TBC1 domain family, member 24
chr5_-_20814576 0.06 ENSDART00000098682
ENSDART00000147639
si:ch211-225b11.1
chr7_+_48999723 0.06 ENSDART00000182699
ENSDART00000166329
si:ch211-288d18.1
chr9_-_2892250 0.05 ENSDART00000140695
cell division cycle associated 7a
chr15_+_47440477 0.05 ENSDART00000002384
paired-like homeobox 2a
chr5_+_41476443 0.05 ENSDART00000145228
ENSDART00000137981
ENSDART00000142538
protein inhibitor of activated STAT, 2
chr18_-_35407289 0.05 ENSDART00000012018
small nuclear ribonucleoprotein polypeptide A
chr6_+_3827751 0.05 ENSDART00000003008
ENSDART00000122348
glutamate decarboxylase 1b
chr16_+_11724230 0.05 ENSDART00000060266
carcinoembryonic antigen-related cell adhesion molecule 1
chr20_-_874807 0.05 ENSDART00000020506
sorting nexin 14
chr18_+_14595546 0.05 ENSDART00000080788
WAP four-disulfide core domain 1
chr17_+_5768608 0.05 ENSDART00000157039
retinitis pigmentosa 1-like 1a
chr15_+_15856178 0.05 ENSDART00000080338
dual specificity phosphatase 14
chr1_+_49814461 0.05 ENSDART00000132405
lymphoid enhancer-binding factor 1
chr10_-_22106331 0.04 ENSDART00000187654

chr21_+_21743599 0.04 ENSDART00000101700
polymerase (DNA-directed), delta 3, accessory subunit
chr18_-_35407695 0.04 ENSDART00000191845
ENSDART00000141703
small nuclear ribonucleoprotein polypeptide A
chr10_+_3049636 0.04 ENSDART00000081794
ENSDART00000183167
ENSDART00000191634
ENSDART00000183514
Ras protein-specific guanine nucleotide-releasing factor 2a
chr4_-_73372362 0.04 ENSDART00000182312
ENSDART00000158404
ENSDART00000174367
si:cabz01021430.2
zgc:171727
si:cabz01021426.2
chr20_+_26349002 0.04 ENSDART00000152842
spectrin repeat containing, nuclear envelope 1a
chr5_+_32831561 0.04 ENSDART00000169358
ENSDART00000192078
si:ch211-208h16.4
chr14_+_8710568 0.03 ENSDART00000169505
potassium channel, subfamily K, member 4a
chr11_-_12051502 0.03 ENSDART00000183462
suppressor of cytokine signaling 7
chr6_+_22679610 0.03 ENSDART00000102701
zmp:0000000634
chr15_-_29387446 0.03 ENSDART00000145976
ENSDART00000035096
serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b
chr6_+_3828560 0.03 ENSDART00000185273
ENSDART00000179091
glutamate decarboxylase 1b
chr6_+_28294113 0.03 ENSDART00000136898
LIM domain containing preferred translocation partner in lipoma
chr5_-_51830997 0.02 ENSDART00000163616
homer scaffolding protein 1b
chr20_+_34400715 0.02 ENSDART00000061632
family with sequence similarity 129, member Aa
chr9_+_36314867 0.02 ENSDART00000176763
low density lipoprotein receptor-related protein 1Bb
chr11_-_12051283 0.02 ENSDART00000170516
suppressor of cytokine signaling 7
chr15_+_44135726 0.02 ENSDART00000192151

chr6_-_10740365 0.02 ENSDART00000150942
Sp3b transcription factor
chr16_+_1383914 0.02 ENSDART00000185089
ceramide synthase 2b
chr14_+_46020282 0.02 ENSDART00000190087
C1q and TNF related 2
chr1_+_2112726 0.02 ENSDART00000131714
ENSDART00000138396
muscleblind-like splicing regulator 2
chr14_+_46020571 0.02 ENSDART00000157617
ENSDART00000083928
C1q and TNF related 2
chr3_+_57820913 0.01 ENSDART00000168101

chr1_+_31658011 0.01 ENSDART00000192203
polymerase (DNA directed), lambda
chr8_+_40644838 0.01 ENSDART00000169311
adrenoceptor alpha 2B
chr5_-_38451082 0.01 ENSDART00000136428
cholinergic receptor, nicotinic, epsilon
chr2_+_45548890 0.01 ENSDART00000113994
fibronectin type III domain containing 7a
chr11_+_36683859 0.01 ENSDART00000170102
si:ch211-11c3.12
chr17_-_15201031 0.00 ENSDART00000124426
suppressor of cytokine signaling 4
chr5_-_39805874 0.00 ENSDART00000176202
ENSDART00000191683
RasGEF domain family, member 1Ba
chr9_-_12885201 0.00 ENSDART00000124957
ankyrin repeat and zinc finger domain containing 1
chr7_-_22956716 0.00 ENSDART00000122113
TNF superfamily member 10, like
chr8_-_50981175 0.00 ENSDART00000004065
zgc:91909
chr21_-_20765338 0.00 ENSDART00000135940
growth hormone receptor b
chr18_-_35407530 0.00 ENSDART00000137663
small nuclear ribonucleoprotein polypeptide A
chr15_+_888704 0.00 ENSDART00000182796
si:dkey-7i4.9

Network of associatons between targets according to the STRING database.

First level regulatory network of hmga1a

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.


View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0060631 regulation of meiosis I(GO:0060631)
0.1 0.5 GO:0060967 negative regulation of posttranscriptional gene silencing(GO:0060149) negative regulation of gene silencing by miRNA(GO:0060965) negative regulation of gene silencing by RNA(GO:0060967)
0.1 0.5 GO:0033687 osteoblast proliferation(GO:0033687)
0.0 0.2 GO:0030951 establishment or maintenance of microtubule cytoskeleton polarity(GO:0030951)
0.0 0.3 GO:0010457 centriole-centriole cohesion(GO:0010457)
0.0 0.1 GO:0019852 L-ascorbic acid transport(GO:0015882) L-ascorbic acid metabolic process(GO:0019852)
0.0 0.5 GO:0070193 synaptonemal complex assembly(GO:0007130) synaptonemal complex organization(GO:0070193)
0.0 0.1 GO:0009449 gamma-aminobutyric acid biosynthetic process(GO:0009449)
0.0 0.2 GO:0090243 fibroblast growth factor receptor signaling pathway involved in somitogenesis(GO:0090243)
0.0 0.2 GO:0007080 mitotic metaphase plate congression(GO:0007080)
0.0 0.2 GO:0006656 phosphatidylcholine biosynthetic process(GO:0006656)
0.0 0.1 GO:0044209 AMP salvage(GO:0044209)
0.0 0.3 GO:0061300 cerebellum vasculature development(GO:0061300)
0.0 0.2 GO:0006048 UDP-N-acetylglucosamine biosynthetic process(GO:0006048)
0.0 0.1 GO:0017003 protein-heme linkage(GO:0017003) protein-tetrapyrrole linkage(GO:0017006) cytochrome c-heme linkage(GO:0018063)
0.0 0.3 GO:0043001 Golgi to plasma membrane protein transport(GO:0043001)
0.0 0.4 GO:0006801 superoxide metabolic process(GO:0006801)
0.0 0.0 GO:0070914 UV-damage excision repair(GO:0070914)
0.0 0.1 GO:0043653 mitochondrial fragmentation involved in apoptotic process(GO:0043653)
0.0 0.1 GO:2001238 positive regulation of extrinsic apoptotic signaling pathway(GO:2001238)
0.0 0.2 GO:0007064 mitotic sister chromatid cohesion(GO:0007064)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0042709 succinate-CoA ligase complex(GO:0042709)
0.0 0.3 GO:0033018 sarcoplasmic reticulum lumen(GO:0033018)
0.0 0.2 GO:0031588 nucleotide-activated protein kinase complex(GO:0031588)
0.0 0.3 GO:0002178 palmitoyltransferase complex(GO:0002178)
0.0 0.1 GO:0072669 tRNA-splicing ligase complex(GO:0072669)
0.0 0.2 GO:0000940 condensed chromosome outer kinetochore(GO:0000940)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0004775 succinate-CoA ligase activity(GO:0004774) succinate-CoA ligase (ADP-forming) activity(GO:0004775) succinate-CoA ligase (GDP-forming) activity(GO:0004776)
0.1 0.5 GO:0008494 translation activator activity(GO:0008494)
0.0 0.4 GO:0016176 superoxide-generating NADPH oxidase activator activity(GO:0016176)
0.0 0.2 GO:0070548 L-glutamine aminotransferase activity(GO:0070548)
0.0 0.1 GO:0005547 phosphatidylinositol-3,4,5-trisphosphate binding(GO:0005547)
0.0 0.5 GO:0031078 histone deacetylase activity (H3-K14 specific)(GO:0031078) NAD-dependent histone deacetylase activity (H3-K14 specific)(GO:0032041)
0.0 0.2 GO:0047184 1-acylglycerophosphocholine O-acyltransferase activity(GO:0047184)
0.0 0.2 GO:1990050 phosphatidic acid transporter activity(GO:1990050)
0.0 0.1 GO:0019777 Atg12 transferase activity(GO:0019777)
0.0 0.1 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.0 0.5 GO:0008139 nuclear localization sequence binding(GO:0008139)
0.0 0.2 GO:0043515 kinetochore binding(GO:0043515)
0.0 0.1 GO:0004001 adenosine kinase activity(GO:0004001)
0.0 0.2 GO:0004176 ATP-dependent peptidase activity(GO:0004176)
0.0 0.2 GO:0017091 AU-rich element binding(GO:0017091) mRNA 3'-UTR AU-rich region binding(GO:0035925)
0.0 0.2 GO:0047555 3',5'-cyclic-GMP phosphodiesterase activity(GO:0047555)
0.0 0.1 GO:0004408 holocytochrome-c synthase activity(GO:0004408)
0.0 0.3 GO:0005080 protein kinase C binding(GO:0005080)
0.0 0.1 GO:0030619 U1 snRNA binding(GO:0030619)
0.0 0.1 GO:0055056 D-glucose transmembrane transporter activity(GO:0055056)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.6 PID RANBP2 PATHWAY Sumoylation by RanBP2 regulates transcriptional repression
0.0 0.5 PID SMAD2 3PATHWAY Regulation of cytoplasmic and nuclear SMAD2/3 signaling
0.0 0.3 PID P38 GAMMA DELTA PATHWAY Signaling mediated by p38-gamma and p38-delta
0.0 0.3 PID INTEGRIN A4B1 PATHWAY Alpha4 beta1 integrin signaling events
0.0 0.4 PID RHOA REG PATHWAY Regulation of RhoA activity

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 REACTOME REGULATION OF RHEB GTPASE ACTIVITY BY AMPK Genes involved in Regulation of Rheb GTPase activity by AMPK
0.0 0.2 REACTOME ACYL CHAIN REMODELLING OF PS Genes involved in Acyl chain remodelling of PS
0.0 0.3 REACTOME SEMA3A PLEXIN REPULSION SIGNALING BY INHIBITING INTEGRIN ADHESION Genes involved in SEMA3A-Plexin repulsion signaling by inhibiting Integrin adhesion
0.0 0.3 REACTOME MTORC1 MEDIATED SIGNALLING Genes involved in mTORC1-mediated signalling
0.0 0.5 REACTOME DOWNREGULATION OF SMAD2 3 SMAD4 TRANSCRIPTIONAL ACTIVITY Genes involved in Downregulation of SMAD2/3:SMAD4 transcriptional activity
0.0 0.4 REACTOME CITRIC ACID CYCLE TCA CYCLE Genes involved in Citric acid cycle (TCA cycle)
0.0 0.5 REACTOME TRANSPORT OF RIBONUCLEOPROTEINS INTO THE HOST NUCLEUS Genes involved in Transport of Ribonucleoproteins into the Host Nucleus
0.0 0.1 REACTOME GLUTAMATE NEUROTRANSMITTER RELEASE CYCLE Genes involved in Glutamate Neurotransmitter Release Cycle