PRJNA438478: RNAseq of wild type zebrafish germline

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
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Gene Symbol	Gene ID	Gene Info
hlx1 Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000009134	H2.0-like homeo box 1 (Drosophila)

Gene	Promoter	Pearson corr. coef.	P-value	Plot
hlx1	dr11_v1_chr20_-_52199296_52199311	-0.84	1.1e-05	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr17_-_2590222 Show fit	0.98	ENSDART00000185711	CR759892.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr16_+_46401756 Show fit	0.56	ENSDART00000147370 ENSDART00000144000	rpz2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	rapunzel 2
chr9_+_45227028 Show fit	0.53	ENSDART00000185579	adarb1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adenosine deaminase, RNA-specific, B1b
chr17_+_7620220 Show fit	0.45	ENSDART00000081447	fbxo30a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	F-box protein 30a
chr23_-_29394505 Show fit	0.44	ENSDART00000017728	pgd Links NCBI UniProt ZFIN ENSEMBL Google Show fit	phosphogluconate dehydrogenase
chr10_+_43039947 Show fit	0.30	ENSDART00000193434	atg10 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATG10 autophagy related 10 homolog (S. cerevisiae)
chr16_+_46401576 Show fit	0.25	ENSDART00000130264	rpz Links NCBI UniProt ZFIN ENSEMBL Google Show fit	rapunzel
chr8_+_50953776 Show fit	0.22	ENSDART00000013870	zgc:56596 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:56596
chr5_-_23581355 Show fit	0.20	ENSDART00000191869	cwc15 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	CWC15 spliceosome-associated protein homolog (S. cerevisiae)
chr17_+_49281597 Show fit	0.18	ENSDART00000155599	zgc:113176 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:113176
chr8_-_11834599 Show fit	0.16	ENSDART00000190986	rapgef1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Rap guanine nucleotide exchange factor (GEF) 1a
chr17_+_9310259 Show fit	0.16	ENSDART00000186158 ENSDART00000190329	NPAS3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neuronal PAS domain protein 3
chr3_-_20040636 Show fit	0.15	ENSDART00000104118	atxn7l3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ataxin 7-like 3
chr9_+_39026311 Show fit	0.14	ENSDART00000188203	cps1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	carbamoyl-phosphate synthase 1, mitochondrial
chr14_-_7207961 Show fit	0.13	ENSDART00000167994 ENSDART00000166532	stox2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	storkhead box 2b
chr22_-_20950448 Show fit	0.13	ENSDART00000002029	fkbp8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	FK506 binding protein 8
chr17_+_8799661 Show fit	0.11	ENSDART00000105326	tonsl Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tonsoku-like, DNA repair protein
chr16_+_7380463 Show fit	0.10	ENSDART00000029727 ENSDART00000149086	atg5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ATG5 autophagy related 5 homolog (S. cerevisiae)
chr17_+_8799451 Show fit	0.10	ENSDART00000189814 ENSDART00000191577	tonsl Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tonsoku-like, DNA repair protein
chr8_+_7801060 Show fit	0.07	ENSDART00000161618	tfe3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transcription factor binding to IGHM enhancer 3a
chr3_+_29714775 Show fit	0.07	ENSDART00000041388	cacng2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calcium channel, voltage-dependent, gamma subunit 2a
chr11_-_16394971 Show fit	0.07	ENSDART00000180981 ENSDART00000179925	lrig1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	leucine-rich repeats and immunoglobulin-like domains 1
chr9_-_23118350 Show fit	0.06	ENSDART00000020884	lypd6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	LY6/PLAUR domain containing 6
chr13_+_22964868 Show fit	0.03	ENSDART00000142129	tacr2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tachykinin receptor 2
chr7_+_21272833 Show fit	0.02	ENSDART00000052942	serpinh2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	serine (or cysteine) peptidase inhibitor, clade H, member 2
chr6_-_28980756 Show fit	0.01	ENSDART00000014661	glmnb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glomulin, FKBP associated protein b
chr2_+_29842878 Show fit	0.01	ENSDART00000131376	si:ch211-207d6.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-207d6.2
chr8_-_39952727 Show fit	0.00	ENSDART00000181310	cabp1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calcium binding protein 1a

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.5	GO:0006382	adenosine to inosine editing(GO:0006382)
0.0	0.4	GO:0006098	pentose-phosphate shunt(GO:0006098)
0.0	0.1	GO:0043416	regulation of skeletal muscle tissue regeneration(GO:0043416)
0.0	0.1	GO:0097272	ammonia homeostasis(GO:0097272)
0.0	0.2	GO:0071816	tail-anchored membrane protein insertion into ER membrane(GO:0071816)
0.0	0.2	GO:0045292	mRNA cis splicing, via spliceosome(GO:0045292)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0071818	BAT3 complex(GO:0071818)
0.0	0.2	GO:0005662	DNA replication factor A complex(GO:0005662)
0.0	0.2	GO:0071007	U2-type catalytic step 2 spliceosome(GO:0071007)
0.0	0.1	GO:0034045	pre-autophagosomal structure membrane(GO:0034045)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.3	GO:0019777	Atg12 transferase activity(GO:0019777)
0.0	0.5	GO:0003726	double-stranded RNA adenosine deaminase activity(GO:0003726)
0.0	0.1	GO:0004087	carbamoyl-phosphate synthase (ammonia) activity(GO:0004087)