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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for hinfp

Z-value: 0.31

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Transcription factors associated with hinfp

Gene Symbol Gene ID Gene Info
hinfp
ENSDARG00000004851 histone H4 transcription factor

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hinfpdr11_v1_chr5_+_30596477_305964770.701.3e-03Click!

Activity profile of hinfp motif

Sorted Z-values of hinfp motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr10_-_21362071 0.91 ENSDART00000125167
avd
avidin
chr9_+_8408054 0.88 ENSDART00000144373
zgc:153499
zgc:153499
chr10_-_21362320 0.86 ENSDART00000189789
avd
avidin
chr5_-_63065912 0.80 ENSDART00000161149
fam57a
family with sequence similarity 57 member A
chr4_-_20081621 0.75 ENSDART00000024647
dennd6b
DENN/MADD domain containing 6B
chr5_+_47863153 0.74 ENSDART00000051518
rasa1a
RAS p21 protein activator (GTPase activating protein) 1a
chr24_+_5799764 0.72 ENSDART00000154482
si:ch211-157j23.2
si:ch211-157j23.2
chr5_+_47862636 0.68 ENSDART00000139824
rasa1a
RAS p21 protein activator (GTPase activating protein) 1a
chr9_+_8407778 0.68 ENSDART00000102754
ENSDART00000178144
zgc:153499
zgc:153499
chr19_-_31765615 0.68 ENSDART00000103636
si:dkeyp-120h9.1
si:dkeyp-120h9.1
chr5_-_47975440 0.65 ENSDART00000145665
ENSDART00000007057
ccnh
cyclin H
chr8_+_11687254 0.61 ENSDART00000042040
atp2a2a
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2a
chr8_+_11687586 0.61 ENSDART00000146241
atp2a2a
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2a
chr17_-_24866727 0.57 ENSDART00000027957
hmgcl
3-hydroxymethyl-3-methylglutaryl-CoA lyase
chr11_+_2710530 0.56 ENSDART00000132768
ENSDART00000030921
ENSDART00000040147
mapk14b
mitogen-activated protein kinase 14b
chr17_-_24866964 0.55 ENSDART00000190601
ENSDART00000192547
hmgcl
3-hydroxymethyl-3-methylglutaryl-CoA lyase
chr7_+_29163762 0.54 ENSDART00000173762
slc38a8b
solute carrier family 38, member 8b
chr21_-_12749501 0.54 ENSDART00000179724
LO018011.1

chr17_+_6793001 0.51 ENSDART00000030773
foxo3a
forkhead box O3A
chr2_-_27651674 0.50 ENSDART00000177402
tgs1
trimethylguanosine synthase 1
chr4_-_2196798 0.48 ENSDART00000110178
ENSDART00000149330
kcnc2
potassium voltage-gated channel, Shaw-related subfamily, member 2
chr13_+_28618086 0.44 ENSDART00000087001
cnnm2a
cyclin and CBS domain divalent metal cation transport mediator 2a
chr5_+_31168096 0.42 ENSDART00000086443
ENSDART00000192271
atp2a3
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3
chr2_+_15048410 0.41 ENSDART00000058484
cnn3b
calponin 3, acidic b
chr20_+_42246948 0.41 ENSDART00000061135
gopc
golgi-associated PDZ and coiled-coil motif containing
chr16_+_23495600 0.41 ENSDART00000021092
snx27b
sorting nexin family member 27b
chr8_+_21225064 0.40 ENSDART00000129210
cry1ba
cryptochrome circadian clock 1ba
chr23_+_45845423 0.39 ENSDART00000183404
lmnl3
lamin L3
chr25_-_21763750 0.39 ENSDART00000089596
tmem168b
transmembrane protein 168b
chr7_-_69184420 0.38 ENSDART00000168311
ENSDART00000159239
ENSDART00000161319
usp10
ubiquitin specific peptidase 10
chr20_+_28266892 0.36 ENSDART00000103330
chac1
ChaC, cation transport regulator homolog 1 (E. coli)
chr21_+_21279159 0.36 ENSDART00000148346
itpkca
inositol-trisphosphate 3-kinase Ca
chr3_+_25166805 0.36 ENSDART00000077493
TST
zgc:162544
chr3_+_26035550 0.35 ENSDART00000078137
ankrd54
ankyrin repeat domain 54
chr7_-_48396193 0.34 ENSDART00000083555
sin3ab
SIN3 transcription regulator family member Ab
chr2_-_56635744 0.33 ENSDART00000167790
ENSDART00000168160
pip5k1cb
phosphatidylinositol-4-phosphate 5-kinase, type I, gamma b
chr7_-_8961941 0.33 ENSDART00000111002
si:ch211-74f19.2
si:ch211-74f19.2
chr16_-_17586883 0.32 ENSDART00000017142
m6pr
mannose-6-phosphate receptor (cation dependent)
chr21_+_28747069 0.32 ENSDART00000014058
zgc:100829
zgc:100829
chr4_-_20232974 0.31 ENSDART00000193353
stk38l
serine/threonine kinase 38 like
chr20_-_43917647 0.29 ENSDART00000026213
mark3b
MAP/microtubule affinity-regulating kinase 3b
chr19_+_8612839 0.29 ENSDART00000144925
snx27a
sorting nexin family member 27a
chr2_+_27651984 0.29 ENSDART00000126762
tmem68
transmembrane protein 68
chr20_+_35208020 0.29 ENSDART00000153315
ENSDART00000045135
fbxo16
F-box protein 16
chr23_+_1216215 0.28 ENSDART00000165957
utrn
utrophin
chr11_-_21363834 0.28 ENSDART00000080051
RASSF5
si:dkey-85p17.3
chr11_-_25853212 0.27 ENSDART00000145655
tmem51b
transmembrane protein 51b
chr13_+_29925397 0.26 ENSDART00000123482
cuedc2
CUE domain containing 2
chr21_+_28747236 0.26 ENSDART00000137874
zgc:100829
zgc:100829
chr2_-_1468258 0.26 ENSDART00000114431
gpaa1
glycosylphosphatidylinositol anchor attachment 1
chr23_+_43668756 0.25 ENSDART00000112598
otud4
OTU deubiquitinase 4
chr23_+_30707837 0.24 ENSDART00000016096
dnajc11a
DnaJ (Hsp40) homolog, subfamily C, member 11a
chr10_+_21444654 0.24 ENSDART00000140113
ENSDART00000184386
ENSDART00000019252
fbxw11b
F-box and WD repeat domain containing 11b
chr7_-_62244744 0.24 ENSDART00000192522
ENSDART00000170635
ENSDART00000073872
CCKAR
cholecystokinin A receptor
chr2_+_27652386 0.24 ENSDART00000188261
tmem68
transmembrane protein 68
chr22_-_20342260 0.23 ENSDART00000161610
ENSDART00000165667
tcf3b
transcription factor 3b
chr5_-_23117078 0.22 ENSDART00000051529
uprt
uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae)
chr5_-_37881345 0.22 ENSDART00000084819
arhgap35b
Rho GTPase activating protein 35b
chr1_+_57347888 0.21 ENSDART00000104222
b3gntl1
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1
chr6_+_34038963 0.21 ENSDART00000057732
ENSDART00000192496
ap1m3
adaptor-related protein complex 1, mu 3 subunit
chr4_-_77557279 0.21 ENSDART00000180113
AL935186.10

chr8_-_49935358 0.20 ENSDART00000159782
ENSDART00000156841
agtpbp1
CU694202.1
ATP/GTP binding protein 1

chr25_-_31907590 0.20 ENSDART00000149707
ENSDART00000149471
eif3ja
eukaryotic translation initiation factor 3, subunit Ja
chr21_+_18950575 0.16 ENSDART00000036172
crkl
v-crk avian sarcoma virus CT10 oncogene homolog-like
chr17_-_21784152 0.15 ENSDART00000127254
hmx2
H6 family homeobox 2
chr10_-_35321625 0.15 ENSDART00000131268
rhbdd2
rhomboid domain containing 2
chr3_-_8399774 0.14 ENSDART00000190238
ENSDART00000113140
ENSDART00000132949
rbfox3b
RNA binding fox-1 homolog 3b
chr24_+_28383278 0.14 ENSDART00000018095
sh3glb1a
SH3-domain GRB2-like endophilin B1a
chr7_+_28612671 0.14 ENSDART00000019991
slc7a6os
solute carrier family 7, member 6 opposite strand
chr10_+_8551897 0.14 ENSDART00000084353
tbc1d10ab
TBC1 domain family, member 10Ab
chr25_-_10791437 0.13 ENSDART00000127054
BX572619.1

chr5_+_38886499 0.11 ENSDART00000076845
fras1
Fraser extracellular matrix complex subunit 1
chr16_+_2905150 0.11 ENSDART00000109980
lars2
leucyl-tRNA synthetase 2, mitochondrial
chr23_+_1078072 0.11 ENSDART00000159263
ENSDART00000053527
slc34a2b
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2b
chr5_-_8483457 0.10 ENSDART00000171886
ENSDART00000159477
ENSDART00000157423
lifra
leukemia inhibitory factor receptor alpha a
chr3_+_25849560 0.10 ENSDART00000007119
mfsd6l
major facilitator superfamily domain containing 6-like
chr3_-_6441619 0.10 ENSDART00000157771
ENSDART00000166758
sumo2b
small ubiquitin-like modifier 2b
chr19_-_31900893 0.10 ENSDART00000113797
zbtb10
zinc finger and BTB domain containing 10
chr1_+_54069450 0.09 ENSDART00000108601
ENSDART00000187878
dcaf15
DDB1 and CUL4 associated factor 15
chr6_-_58975010 0.09 ENSDART00000144911
ENSDART00000144514
mars
methionyl-tRNA synthetase
chr19_-_11425542 0.09 ENSDART00000177875
ENSDART00000080762
sept7a
septin 7a
chr5_-_56943064 0.09 ENSDART00000146991
si:ch211-127d4.3
si:ch211-127d4.3
chr25_-_26833100 0.08 ENSDART00000014052
neil1
nei-like DNA glycosylase 1
chr22_+_11775269 0.08 ENSDART00000140272
krt96
keratin 96
chr16_+_40954481 0.08 ENSDART00000058587
gbp
glycogen synthase kinase binding protein
chr2_-_3678029 0.08 ENSDART00000146861
mmp16b
matrix metallopeptidase 16b (membrane-inserted)
chr3_+_60962410 0.06 ENSDART00000042674
helz
helicase with zinc finger
chr11_+_1551603 0.06 ENSDART00000185383
ENSDART00000121489
ENSDART00000040577
mybl2b
v-myb avian myeloblastosis viral oncogene homolog-like 2b
chr12_-_34758474 0.06 ENSDART00000153418
bahcc1b
BAH domain and coiled-coil containing 1b
chr10_+_13279079 0.06 ENSDART00000135082
tmem267
transmembrane protein 267
chr6_-_35310224 0.06 ENSDART00000148997
nos1apa
nitric oxide synthase 1 (neuronal) adaptor protein a
chr21_-_1742159 0.05 ENSDART00000151049
onecut2
one cut homeobox 2
chr21_-_10446405 0.05 ENSDART00000167948
hcn1
hyperpolarization activated cyclic nucleotide-gated potassium channel 1
chr8_+_41533268 0.05 ENSDART00000142377
si:ch211-158d24.2
si:ch211-158d24.2
chr19_-_1023051 0.05 ENSDART00000158429
tmem42b
transmembrane protein 42b
chr21_-_3770636 0.05 ENSDART00000053596
scamp1
secretory carrier membrane protein 1
chr21_-_41147818 0.04 ENSDART00000167339
ENSDART00000192730
msx2b
muscle segment homeobox 2b
chr20_-_2298970 0.04 ENSDART00000136067
EPB41L2
si:ch73-18b11.1
chr20_-_49650293 0.04 ENSDART00000151239
col12a1b
collagen, type XII, alpha 1b
chr2_+_16173999 0.04 ENSDART00000177639
ENSDART00000157601
ENSDART00000190186
ENSDART00000045933
sh3glb1b
SH3-domain GRB2-like endophilin B1b
chr19_+_48290786 0.04 ENSDART00000165986
zgc:101785
zgc:101785
chr22_-_24900121 0.04 ENSDART00000147643
si:dkey-4c23.3
si:dkey-4c23.3
chr14_+_16937997 0.03 ENSDART00000163013
ENSDART00000167856
limch1b
LIM and calponin homology domains 1b
chr6_-_57655030 0.03 ENSDART00000155438
cbfa2t2
core-binding factor, runt domain, alpha subunit 2; translocated to, 2
chr4_+_72580821 0.02 ENSDART00000124528
si:cabz01054394.5
si:cabz01054394.5
chr12_+_46608361 0.02 ENSDART00000189164
FADS6
fatty acid desaturase 6
chr1_+_40801448 0.02 ENSDART00000187394
cpz
carboxypeptidase Z
chr5_+_12888260 0.02 ENSDART00000175916
gal3st1a
galactose-3-O-sulfotransferase 1a
chr4_+_11690923 0.02 ENSDART00000150624
mkln1
muskelin 1, intracellular mediator containing kelch motifs
chr9_-_4856767 0.02 ENSDART00000016814
ENSDART00000138015
fmnl2a
formin-like 2a
chr20_-_6278817 0.02 ENSDART00000033404
opn7a
opsin 7, group member a
chr17_+_5846202 0.02 ENSDART00000189713
fndc4b
fibronectin type III domain containing 4b
chr19_+_5135113 0.01 ENSDART00000151310
si:dkey-89b17.4
si:dkey-89b17.4
chr9_+_55154414 0.01 ENSDART00000182924
ANOS1
anosmin 1
chr19_-_5135345 0.01 ENSDART00000151787
gnb3b
guanine nucleotide binding protein (G protein), beta polypeptide 3b
chr22_-_20105969 0.01 ENSDART00000088687
rxfp3.2b
relaxin/insulin-like family peptide receptor 3.2b
chr1_-_34612613 0.00 ENSDART00000004361
klf5a
Kruppel-like factor 5a

Network of associatons between targets according to the STRING database.

First level regulatory network of hinfp

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.1 GO:0046951 ketone body biosynthetic process(GO:0046951)
0.1 0.4 GO:2000008 regulation of protein localization to cell surface(GO:2000008) negative regulation of protein localization to cell surface(GO:2000009)
0.1 0.7 GO:0033238 regulation of cellular amino acid metabolic process(GO:0006521) regulation of cellular amine metabolic process(GO:0033238)
0.1 0.6 GO:1901741 positive regulation of myoblast fusion(GO:1901741)
0.1 0.2 GO:2000660 regulation of interleukin-1-mediated signaling pathway(GO:2000659) negative regulation of interleukin-1-mediated signaling pathway(GO:2000660)
0.1 0.2 GO:0035610 protein side chain deglutamylation(GO:0035610)
0.0 1.4 GO:0048013 ephrin receptor signaling pathway(GO:0048013)
0.0 0.6 GO:0070816 phosphorylation of RNA polymerase II C-terminal domain(GO:0070816)
0.0 0.3 GO:0016255 attachment of GPI anchor to protein(GO:0016255)
0.0 0.4 GO:0010960 magnesium ion homeostasis(GO:0010960)
0.0 0.4 GO:0010955 glutathione catabolic process(GO:0006751) negative regulation of protein processing(GO:0010955) negative regulation of protein maturation(GO:1903318)
0.0 0.1 GO:0044321 leptin-mediated signaling pathway(GO:0033210) cellular response to leptin stimulus(GO:0044320) response to leptin(GO:0044321)
0.0 0.7 GO:1990126 retrograde transport, endosome to plasma membrane(GO:1990126)
0.0 0.3 GO:0006622 protein targeting to lysosome(GO:0006622)
0.0 0.1 GO:0044341 sodium-dependent phosphate transport(GO:0044341)
0.0 0.4 GO:0032958 inositol phosphate biosynthetic process(GO:0032958)
0.0 0.2 GO:0042407 cristae formation(GO:0042407)
0.0 0.1 GO:0048532 anatomical structure arrangement(GO:0048532)
0.0 0.4 GO:0030330 DNA damage response, signal transduction by p53 class mediator(GO:0030330)
0.0 1.1 GO:0008016 regulation of heart contraction(GO:0008016)
0.0 0.8 GO:0055088 lipid homeostasis(GO:0055088)
0.0 0.5 GO:0003333 amino acid transmembrane transport(GO:0003333)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.6 GO:0033017 sarcoplasmic reticulum membrane(GO:0033017)
0.1 0.6 GO:0005675 holo TFIIH complex(GO:0005675)
0.0 0.3 GO:0042765 GPI-anchor transamidase complex(GO:0042765)
0.0 0.3 GO:0016580 Sin3 complex(GO:0016580)
0.0 0.5 GO:0044298 neuronal cell body membrane(GO:0032809) cell body membrane(GO:0044298)
0.0 0.2 GO:0061617 MICOS complex(GO:0061617)
0.0 0.4 GO:0030140 trans-Golgi network transport vesicle(GO:0030140)
0.0 1.1 GO:0042579 peroxisome(GO:0005777) microbody(GO:0042579)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.8 GO:0009374 biotin binding(GO:0009374)
0.3 1.1 GO:0004419 hydroxymethylglutaryl-CoA lyase activity(GO:0004419)
0.1 1.6 GO:0008553 hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553)
0.1 0.4 GO:0003839 gamma-glutamylcyclotransferase activity(GO:0003839)
0.0 0.7 GO:0015174 basic amino acid transmembrane transporter activity(GO:0015174)
0.0 0.3 GO:0005537 mannose binding(GO:0005537)
0.0 0.1 GO:0004925 prolactin receptor activity(GO:0004925)
0.0 0.4 GO:0000828 inositol hexakisphosphate kinase activity(GO:0000828)
0.0 0.7 GO:0032266 phosphatidylinositol-3-phosphate binding(GO:0032266)
0.0 0.4 GO:0015095 magnesium ion transmembrane transporter activity(GO:0015095)
0.0 0.1 GO:0005436 sodium:phosphate symporter activity(GO:0005436)
0.0 0.6 GO:0004707 MAP kinase activity(GO:0004707)
0.0 0.2 GO:0061578 Lys63-specific deubiquitinase activity(GO:0061578)
0.0 0.3 GO:0050321 tau-protein kinase activity(GO:0050321)
0.0 0.1 GO:0002161 aminoacyl-tRNA editing activity(GO:0002161)
0.0 0.5 GO:0005251 delayed rectifier potassium channel activity(GO:0005251)
0.0 0.6 GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.6 PID RETINOIC ACID PATHWAY Retinoic acid receptors-mediated signaling
0.0 0.2 PID TCR JNK PATHWAY JNK signaling in the CD4+ TCR pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.6 REACTOME CYCLIN A B1 ASSOCIATED EVENTS DURING G2 M TRANSITION Genes involved in Cyclin A/B1 associated events during G2/M transition
0.0 0.5 REACTOME YAP1 AND WWTR1 TAZ STIMULATED GENE EXPRESSION Genes involved in YAP1- and WWTR1 (TAZ)-stimulated gene expression
0.0 0.4 REACTOME PRE NOTCH PROCESSING IN GOLGI Genes involved in Pre-NOTCH Processing in Golgi
0.0 0.4 REACTOME SULFUR AMINO ACID METABOLISM Genes involved in Sulfur amino acid metabolism
0.0 0.5 REACTOME VOLTAGE GATED POTASSIUM CHANNELS Genes involved in Voltage gated Potassium channels
0.0 0.3 REACTOME LYSOSOME VESICLE BIOGENESIS Genes involved in Lysosome Vesicle Biogenesis