Project

PRJNA438478: RNAseq of wild type zebrafish germline

Navigation
Downloads

Results for gmeb1

Z-value: 0.30

Motif logo

logo of

Transcription factors associated with gmeb1

Gene Symbol Gene ID Gene Info
gmeb1
ENSDARG00000062060 glucocorticoid modulatory element binding protein 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
gmeb1dr11_v1_chr19_+_16068445_16068445-0.331.8e-01Click!

Activity profile of gmeb1 motif

Sorted Z-values of gmeb1 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr12_-_11649690 1.06 ENSDART00000149713
btbd16
BTB (POZ) domain containing 16
chr5_+_30588856 0.95 ENSDART00000086661
dpagt1
dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)
chr5_-_30588539 0.85 ENSDART00000086686
ENSDART00000159163
ENSDART00000142958
c2cd2l
c2cd2-like
chr16_-_24815091 0.66 ENSDART00000154269
ENSDART00000131025
kcnn4
potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
chr25_+_34845115 0.62 ENSDART00000061996
tmem231
transmembrane protein 231
chr9_-_306515 0.51 ENSDART00000166059
si:ch211-166e11.5
si:ch211-166e11.5
chr11_+_35364445 0.49 ENSDART00000125766
camkvb
CaM kinase-like vesicle-associated b
chr4_-_17642168 0.42 ENSDART00000007030
klhl42
kelch-like family, member 42
chr14_-_26400501 0.40 ENSDART00000054189
pimr212
Pim proto-oncogene, serine/threonine kinase, related 212
chr5_-_67993086 0.38 ENSDART00000049331
gtf3aa
general transcription factor IIIAa
chr21_-_8153165 0.37 ENSDART00000182580
CABZ01074363.1

chr3_-_16000168 0.33 ENSDART00000160628
nme3
NME/NM23 nucleoside diphosphate kinase 3
chr14_-_21932403 0.33 ENSDART00000054420
rad9a
RAD9 checkpoint clamp component A
chr4_+_45148652 0.32 ENSDART00000150798
si:dkey-51d8.9
si:dkey-51d8.9
chr3_-_15999501 0.31 ENSDART00000160668
nme3
NME/NM23 nucleoside diphosphate kinase 3
chr25_+_36045072 0.29 ENSDART00000126326
rpgrip1l
RPGRIP1-like
chr20_+_22666548 0.28 ENSDART00000147520
lnx1
ligand of numb-protein X 1
chr10_+_39091716 0.28 ENSDART00000193072
si:ch73-1a9.4
si:ch73-1a9.4
chr4_-_25485404 0.25 ENSDART00000041402
pfkfb3
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
chr9_-_28103097 0.24 ENSDART00000146284
kcnh3
potassium voltage-gated channel, subfamily H (eag-related), member 3
chr4_-_25485214 0.23 ENSDART00000159941
pfkfb3
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
chr20_-_27381691 0.23 ENSDART00000010293
serpina10a
serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10a
chr8_+_10305400 0.23 ENSDART00000172400
pim1
Pim-1 proto-oncogene, serine/threonine kinase
chr16_+_23397785 0.22 ENSDART00000148961
s100a10b
S100 calcium binding protein A10b
chr14_-_8795081 0.17 ENSDART00000106671
tgfb2l
transforming growth factor, beta 2, like
chr2_-_3045861 0.17 ENSDART00000105818
ENSDART00000187575
guk1a
guanylate kinase 1a
chr5_+_6955900 0.14 ENSDART00000099417
CABZ01041962.1

chr10_-_20523405 0.12 ENSDART00000114824
ddhd2
DDHD domain containing 2
chr1_+_17676745 0.09 ENSDART00000030665
slc25a4
solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4
chr20_+_27427112 0.09 ENSDART00000153459
si:dkey-22l1.1
si:dkey-22l1.1
chr21_+_6397463 0.05 ENSDART00000136539
si:ch211-225g23.1
si:ch211-225g23.1
chr17_-_25831569 0.03 ENSDART00000148743
hhat
hedgehog acyltransferase
chr25_-_36044583 0.02 ENSDART00000073432
rbl2
retinoblastoma-like 2 (p130)
chr2_-_5399437 0.02 ENSDART00000132411
si:ch1073-184j22.2
si:ch1073-184j22.2

Network of associatons between targets according to the STRING database.

First level regulatory network of gmeb1

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.
View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.0 GO:0006488 dolichol-linked oligosaccharide biosynthetic process(GO:0006488)
0.0 0.6 GO:0006228 UTP biosynthetic process(GO:0006228) UTP metabolic process(GO:0046051)
0.0 0.5 GO:0006003 fructose 2,6-bisphosphate metabolic process(GO:0006003)
0.0 0.3 GO:0071479 cellular response to ionizing radiation(GO:0071479)
0.0 0.3 GO:0046548 retinal rod cell development(GO:0046548)
0.0 0.1 GO:0051503 intracellular nucleoside transport(GO:0015859) purine nucleoside transmembrane transport(GO:0015860) purine nucleotide transport(GO:0015865) ATP transport(GO:0015867) purine ribonucleotide transport(GO:0015868) adenine nucleotide transport(GO:0051503) mitochondrial ATP transmembrane transport(GO:1990544)
0.0 0.4 GO:1990798 pancreas regeneration(GO:1990798)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0030896 checkpoint clamp complex(GO:0030896)
0.0 0.6 GO:0036038 MKS complex(GO:0036038)
0.0 0.3 GO:0032391 photoreceptor connecting cilium(GO:0032391)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.7 GO:0016286 small conductance calcium-activated potassium channel activity(GO:0016286)
0.0 1.0 GO:0016780 phosphotransferase activity, for other substituted phosphate groups(GO:0016780)
0.0 0.5 GO:0003873 6-phosphofructo-2-kinase activity(GO:0003873)
0.0 0.2 GO:0004385 guanylate kinase activity(GO:0004385)
0.0 0.2 GO:0034714 type III transforming growth factor beta receptor binding(GO:0034714)
0.0 0.1 GO:0005471 ATP:ADP antiporter activity(GO:0005471)
0.0 0.6 GO:0004550 nucleoside diphosphate kinase activity(GO:0004550)
0.0 0.5 GO:0004683 calmodulin-dependent protein kinase activity(GO:0004683)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 PID IL5 PATHWAY IL5-mediated signaling events
0.0 0.5 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.0 REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
0.0 0.5 REACTOME GLYCOLYSIS Genes involved in Glycolysis
0.0 0.9 REACTOME POTASSIUM CHANNELS Genes involved in Potassium Channels