PRJNA438478: RNAseq of wild type zebrafish germline

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
glis3 Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000069726	GLIS family zinc finger 3

Gene	Promoter	Pearson corr. coef.	P-value	Plot
glis3	dr11_v1_chr10_-_690072_690170	0.71	1.0e-03	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr5_+_67662430 Show fit	0.55	ENSDART00000137700 ENSDART00000142586	si:dkey-70b23.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-70b23.2
chr3_-_53092509 Show fit	0.45	ENSDART00000062081	lpar2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lysophosphatidic acid receptor 2a
chr14_-_30704075 Show fit	0.32	ENSDART00000134098	efemp2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	EGF containing fibulin extracellular matrix protein 2a
chr15_-_41245962 Show fit	0.28	ENSDART00000155359	smco4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	single-pass membrane protein with coiled-coil domains 4
chr17_+_8925232 Show fit	0.27	ENSDART00000036668	psmc1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	proteasome 26S subunit, ATPase 1a
chr24_-_38574631 Show fit	0.20	ENSDART00000154539	slc17a7b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 17 (vesicular glutamate transporter), member 7b
chr13_+_22421151 Show fit	0.16	ENSDART00000122687	opn4a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	opsin 4a (melanopsin)
chr5_+_45000597 Show fit	0.16	ENSDART00000051146	dmrt3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	doublesex and mab-3 related transcription factor 3a
chr25_+_7461624 Show fit	0.15	ENSDART00000170569	syt12 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	synaptotagmin XII
chr17_+_23578316 Show fit	0.09	ENSDART00000149281	slc16a12a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 16, member 12a
chr4_+_77981553 Show fit	0.09	ENSDART00000174108 ENSDART00000122459	terfa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	telomeric repeat binding factor a
chr24_+_26134209 Show fit	0.08	ENSDART00000038824	tmtopsb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	teleost multiple tissue opsin b
chr20_-_18915376 Show fit	0.07	ENSDART00000063725	xkr6b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	XK, Kell blood group complex subunit-related family, member 6b
chr14_-_34044369 Show fit	0.07	ENSDART00000149396 ENSDART00000123607 ENSDART00000190746	cyfip2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cytoplasmic FMR1 interacting protein 2
chr18_+_7309150 Show fit	0.05	ENSDART00000052792	cers3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ceramide synthase 3b
chr10_+_29260096 Show fit	0.05	ENSDART00000088973	sytl2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	synaptotagmin-like 2a
chr2_+_49246099 Show fit	0.04	ENSDART00000179089	sema6ba Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Ba
chr18_+_33100606 Show fit	0.04	ENSDART00000003907	si:ch211-229c8.13 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-229c8.13
chr8_-_33114202 Show fit	0.04	ENSDART00000098840	ralgps1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Ral GEF with PH domain and SH3 binding motif 1
chr8_+_46641314 Show fit	0.03	ENSDART00000113803	her3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	hairy-related 3
chr21_+_20949976 Show fit	0.03	ENSDART00000135342	htr1ab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	5-hydroxytryptamine (serotonin) receptor 1A b
chr13_-_638485 Show fit	0.03	ENSDART00000066080 ENSDART00000128969	slit1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	slit homolog 1a (Drosophila)
chr21_+_20950161 Show fit	0.03	ENSDART00000079698	htr1ab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	5-hydroxytryptamine (serotonin) receptor 1A b
chr3_-_25106878 Show fit	0.02	ENSDART00000142503	rbx1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ring-box 1, E3 ubiquitin protein ligase
chr20_-_9963713 Show fit	0.01	ENSDART00000104234	gjd2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	gap junction protein delta 2b
chr22_-_3261879 Show fit	0.01	ENSDART00000159643	gpr35.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	G protein-coupled receptor 35, tandem duplicate 1
chr18_-_41375120 Show fit	0.00	ENSDART00000098673	ptx3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	pentraxin 3, long a
chr24_+_26134029 Show fit	0.00	ENSDART00000185134	tmtopsb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	teleost multiple tissue opsin b

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.5	GO:0045647	negative regulation of erythrocyte differentiation(GO:0045647)
0.0	0.2	GO:0098700	neurotransmitter loading into synaptic vesicle(GO:0098700)
0.0	0.1	GO:0032208	regulation of telomere maintenance via recombination(GO:0032207) negative regulation of telomere maintenance via recombination(GO:0032208)
0.0	0.3	GO:0048251	elastic fiber assembly(GO:0048251)
0.0	0.2	GO:0046661	male sex differentiation(GO:0046661)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	GO:0008540	proteasome regulatory particle, base subcomplex(GO:0008540)
0.0	0.2	GO:0030285	integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	GO:0036402	proteasome-activating ATPase activity(GO:0036402)
0.0	0.5	GO:0070915	lysophosphatidic acid receptor activity(GO:0070915)
0.0	0.2	GO:0005326	neurotransmitter transporter activity(GO:0005326)
0.0	0.1	GO:0098505	G-rich strand telomeric DNA binding(GO:0098505)