PRJNA438478: RNAseq of wild type zebrafish germline
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
gata3 | dr11_v1_chr4_-_25064510_25064510 | -0.06 | 8.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr6_-_49159207 Show fit | 2.19 |
ENSDART00000041942
|
tetraspanin 2a |
|
chr12_-_5505205 Show fit | 2.05 |
ENSDART00000092319
|
ABI family, member 3b |
|
chr16_-_35532937 Show fit | 1.79 |
ENSDART00000193209
|
CTP synthase 1b |
|
chr2_-_42492445 Show fit | 1.76 |
ENSDART00000139929
|
extended synaptotagmin-like protein 2a |
|
chr18_+_27337994 Show fit | 1.57 |
ENSDART00000136172
|
si:dkey-29p10.4 |
|
chr5_+_44654535 Show fit | 1.50 |
ENSDART00000182190
ENSDART00000181872 |
death-associated protein kinase 1 |
|
chr3_-_57779801 Show fit | 1.43 |
ENSDART00000074285
|
synaptogyrin 2a |
|
chr6_+_2174082 Show fit | 1.35 |
ENSDART00000073936
|
activin A receptor type 1Bb |
|
chr22_+_21398508 Show fit | 1.26 |
ENSDART00000089408
ENSDART00000186091 |
Src homology 2 domain containing transforming protein D, b |
|
chr5_+_44655148 Show fit | 1.24 |
ENSDART00000124059
|
death-associated protein kinase 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.6 | GO:0010942 | positive regulation of cell death(GO:0010942) positive regulation of apoptotic process(GO:0043065) positive regulation of programmed cell death(GO:0043068) |
0.3 | 2.1 | GO:2001256 | regulation of store-operated calcium entry(GO:2001256) |
0.4 | 1.8 | GO:0044210 | 'de novo' CTP biosynthetic process(GO:0044210) |
0.0 | 1.7 | GO:0032924 | activin receptor signaling pathway(GO:0032924) |
0.1 | 1.5 | GO:2000766 | negative regulation of cytoplasmic translation(GO:2000766) |
0.0 | 1.5 | GO:0007283 | spermatogenesis(GO:0007283) |
0.2 | 1.1 | GO:0030579 | ubiquitin-dependent SMAD protein catabolic process(GO:0030579) |
0.0 | 1.1 | GO:0032465 | regulation of cytokinesis(GO:0032465) |
0.2 | 1.0 | GO:0060251 | regulation of glial cell proliferation(GO:0060251) |
0.0 | 1.0 | GO:0036342 | post-anal tail morphogenesis(GO:0036342) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.9 | GO:0030027 | lamellipodium(GO:0030027) |
0.0 | 2.2 | GO:0014069 | postsynaptic density(GO:0014069) |
0.0 | 2.0 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
0.4 | 1.8 | GO:0097268 | cytoophidium(GO:0097268) |
0.1 | 1.7 | GO:0048179 | activin receptor complex(GO:0048179) |
0.1 | 1.5 | GO:1990124 | messenger ribonucleoprotein complex(GO:1990124) |
0.0 | 1.4 | GO:0031594 | neuromuscular junction(GO:0031594) |
0.1 | 1.2 | GO:0043209 | myelin sheath(GO:0043209) |
0.0 | 1.2 | GO:0000932 | cytoplasmic mRNA processing body(GO:0000932) |
0.1 | 1.1 | GO:0071782 | endoplasmic reticulum tubular network(GO:0071782) endoplasmic reticulum subcompartment(GO:0098827) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.2 | GO:0017124 | SH3 domain binding(GO:0017124) |
0.4 | 2.1 | GO:0035256 | G-protein coupled glutamate receptor binding(GO:0035256) |
0.4 | 1.8 | GO:0003883 | CTP synthase activity(GO:0003883) |
0.2 | 1.8 | GO:0008429 | phosphatidylethanolamine binding(GO:0008429) |
0.0 | 1.6 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
0.0 | 1.4 | GO:0003725 | double-stranded RNA binding(GO:0003725) |
0.2 | 1.3 | GO:0016361 | activin receptor activity, type I(GO:0016361) |
0.2 | 1.3 | GO:0001784 | phosphotyrosine binding(GO:0001784) |
0.1 | 1.3 | GO:0005007 | fibroblast growth factor-activated receptor activity(GO:0005007) |
0.1 | 1.3 | GO:0000900 | translation repressor activity, nucleic acid binding(GO:0000900) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.7 | PID IFNG PATHWAY | IFN-gamma pathway |
0.1 | 1.5 | PID RETINOIC ACID PATHWAY | Retinoic acid receptors-mediated signaling |
0.0 | 1.1 | PID BMP PATHWAY | BMP receptor signaling |
0.0 | 0.8 | PID CERAMIDE PATHWAY | Ceramide signaling pathway |
0.1 | 0.7 | PID EPHA2 FWD PATHWAY | EPHA2 forward signaling |
0.0 | 0.7 | PID ERBB2 ERBB3 PATHWAY | ErbB2/ErbB3 signaling events |
0.0 | 0.5 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.0 | 0.5 | PID PLK1 PATHWAY | PLK1 signaling events |
0.1 | 0.4 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
0.0 | 0.4 | PID HDAC CLASSIII PATHWAY | Signaling events mediated by HDAC Class III |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 2.7 | REACTOME ROLE OF DCC IN REGULATING APOPTOSIS | Genes involved in Role of DCC in regulating apoptosis |
0.1 | 1.4 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
0.2 | 1.0 | REACTOME TGF BETA RECEPTOR SIGNALING IN EMT EPITHELIAL TO MESENCHYMAL TRANSITION | Genes involved in TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition) |
0.1 | 0.8 | REACTOME TERMINATION OF O GLYCAN BIOSYNTHESIS | Genes involved in Termination of O-glycan biosynthesis |
0.0 | 0.8 | REACTOME CIRCADIAN REPRESSION OF EXPRESSION BY REV ERBA | Genes involved in Circadian Repression of Expression by REV-ERBA |
0.1 | 0.7 | REACTOME CD28 DEPENDENT VAV1 PATHWAY | Genes involved in CD28 dependent Vav1 pathway |
0.0 | 0.7 | REACTOME O LINKED GLYCOSYLATION OF MUCINS | Genes involved in O-linked glycosylation of mucins |
0.1 | 0.6 | REACTOME DOWNREGULATION OF ERBB2 ERBB3 SIGNALING | Genes involved in Downregulation of ERBB2:ERBB3 signaling |
0.1 | 0.5 | REACTOME ETHANOL OXIDATION | Genes involved in Ethanol oxidation |
0.0 | 0.5 | REACTOME PRE NOTCH PROCESSING IN GOLGI | Genes involved in Pre-NOTCH Processing in Golgi |