Project
PRJNA438478: RNAseq of wild type zebrafish germline
Navigation
Downloads
Results for foxh1+foxq1a+foxq1b
Z-value: 1.02
Motif logo
Transcription factors associated with foxh1+foxq1a+foxq1b
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| foxq1a | dr11_v1_chr2_-_722156_722170 | 0.70 | 1.3e-03 | Click! |
| foxh1 | dr11_v1_chr12_-_13729263_13729263 | 0.56 | 1.6e-02 | Click! |
| foxq1b | dr11_v1_chr20_+_26683933_26683940 | -0.32 | 2.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr22_+_15960514 Show fit | 2.38 |
ENSDART00000181617
|
scl/tal1 interrupting locus |
|
| chr10_-_6587066 Show fit | 2.25 |
ENSDART00000171833
|
chromodomain helicase DNA binding protein 1 |
|
| chr17_+_25856671 Show fit | 2.23 |
ENSDART00000064817
|
WAPL cohesin release factor a |
|
| chr17_+_15534815 Show fit | 2.21 |
ENSDART00000159426
|
myristoylated alanine-rich protein kinase C substrate b |
|
| chr7_+_28724919 Show fit | 2.20 |
ENSDART00000011324
|
coiled-coil domain containing 102A |
|
| chr22_+_15960005 Show fit | 2.12 |
ENSDART00000033617
|
scl/tal1 interrupting locus |
|
| chr22_+_15959844 Show fit | 2.11 |
ENSDART00000182201
|
scl/tal1 interrupting locus |
|
| chr19_+_25971000 Show fit | 2.06 |
ENSDART00000089836
|
jumonji, AT rich interactive domain 2b |
|
| chr21_-_44772738 Show fit | 1.96 |
ENSDART00000026178
|
kinesin family member 4 |
|
| chr7_-_53117131 Show fit | 1.95 |
ENSDART00000169211
ENSDART00000168890 ENSDART00000172179 ENSDART00000167882 |
cadherin 1, type 1, E-cadherin (epithelial) |
Network of associatons between targets according to the STRING database.
First level regulatory network of foxh1+foxq1a+foxq1b
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 6.6 | GO:0071539 | protein localization to centrosome(GO:0071539) |
| 0.2 | 3.4 | GO:0090279 | regulation of calcium ion import(GO:0090279) |
| 0.4 | 3.3 | GO:1901224 | positive regulation of NIK/NF-kappaB signaling(GO:1901224) |
| 0.0 | 3.3 | GO:0090630 | activation of GTPase activity(GO:0090630) |
| 0.2 | 2.8 | GO:0050714 | positive regulation of protein secretion(GO:0050714) |
| 0.2 | 2.8 | GO:0008078 | mesodermal cell migration(GO:0008078) |
| 0.1 | 2.5 | GO:0019827 | stem cell population maintenance(GO:0019827) |
| 0.7 | 2.2 | GO:0060623 | regulation of chromosome condensation(GO:0060623) |
| 0.7 | 2.1 | GO:0051574 | positive regulation of histone H3-K9 methylation(GO:0051574) |
| 0.1 | 2.1 | GO:0007064 | mitotic sister chromatid cohesion(GO:0007064) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 6.2 | GO:0005814 | centriole(GO:0005814) |
| 0.1 | 5.5 | GO:0032432 | actin filament bundle(GO:0032432) |
| 0.1 | 2.7 | GO:0008278 | cohesin complex(GO:0008278) |
| 0.4 | 2.5 | GO:0070847 | core mediator complex(GO:0070847) |
| 0.0 | 2.1 | GO:0016459 | myosin complex(GO:0016459) |
| 0.1 | 1.9 | GO:0030057 | desmosome(GO:0030057) |
| 0.0 | 1.8 | GO:0070160 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
| 0.1 | 1.7 | GO:0035098 | ESC/E(Z) complex(GO:0035098) |
| 0.1 | 1.7 | GO:0048787 | presynaptic active zone membrane(GO:0048787) |
| 0.2 | 1.5 | GO:0008385 | IkappaB kinase complex(GO:0008385) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 5.2 | GO:0004435 | phosphatidylinositol phospholipase C activity(GO:0004435) phospholipase C activity(GO:0004629) |
| 0.7 | 2.8 | GO:0051059 | NF-kappaB binding(GO:0051059) |
| 0.0 | 2.3 | GO:0003678 | DNA helicase activity(GO:0003678) |
| 0.2 | 2.1 | GO:0034647 | histone demethylase activity (H3-trimethyl-K4 specific)(GO:0034647) |
| 0.0 | 2.1 | GO:0003774 | motor activity(GO:0003774) |
| 0.0 | 2.0 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.1 | 1.9 | GO:0001965 | G-protein alpha-subunit binding(GO:0001965) |
| 0.0 | 1.6 | GO:0004864 | protein phosphatase inhibitor activity(GO:0004864) |
| 0.4 | 1.5 | GO:0008384 | IkappaB kinase activity(GO:0008384) |
| 0.0 | 1.5 | GO:0016307 | phosphatidylinositol phosphate kinase activity(GO:0016307) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 6.5 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
| 0.2 | 3.4 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
| 0.1 | 3.3 | PID LYSOPHOSPHOLIPID PATHWAY | LPA receptor mediated events |
| 0.1 | 1.9 | PID ECADHERIN KERATINOCYTE PATHWAY | E-cadherin signaling in keratinocytes |
| 0.1 | 1.8 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.1 | 1.8 | PID ATM PATHWAY | ATM pathway |
| 0.0 | 1.6 | PID AURORA B PATHWAY | Aurora B signaling |
| 0.1 | 1.5 | PID AVB3 OPN PATHWAY | Osteopontin-mediated events |
| 0.0 | 1.1 | WNT SIGNALING | Genes related to Wnt-mediated signal transduction |
| 0.1 | 0.9 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 3.4 | REACTOME REGULATION OF INSULIN SECRETION BY ACETYLCHOLINE | Genes involved in Regulation of Insulin Secretion by Acetylcholine |
| 0.6 | 1.9 | REACTOME APOPTOTIC CLEAVAGE OF CELL ADHESION PROTEINS | Genes involved in Apoptotic cleavage of cell adhesion proteins |
| 0.0 | 1.8 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
| 0.2 | 1.5 | REACTOME IKK COMPLEX RECRUITMENT MEDIATED BY RIP1 | Genes involved in IKK complex recruitment mediated by RIP1 |
| 0.1 | 1.2 | REACTOME SYNTHESIS OF PA | Genes involved in Synthesis of PA |
| 0.0 | 1.1 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
| 0.0 | 1.1 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.0 | 1.0 | REACTOME MRNA SPLICING | Genes involved in mRNA Splicing |
| 0.0 | 0.8 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
| 0.0 | 0.8 | REACTOME MRNA SPLICING MINOR PATHWAY | Genes involved in mRNA Splicing - Minor Pathway |