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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for foxg1a+foxg1c+foxg1d

Z-value: 0.34

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Transcription factors associated with foxg1a+foxg1c+foxg1d

Gene Symbol Gene ID Gene Info
foxg1c
ENSDARG00000068380 forkhead box G1c
foxg1d
ENSDARG00000070053 forkhead box G1d
foxg1a
ENSDARG00000070769 forkhead box G1a
foxg1c
ENSDARG00000114414 forkhead box G1c

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
foxg1adr11_v1_chr17_-_29119362_29119362-0.456.0e-02Click!
foxg1cdr11_v1_chr18_-_40901707_40901707-0.391.1e-01Click!
foxg1ddr11_v1_chr13_+_255067_255067-0.322.0e-01Click!

Activity profile of foxg1a+foxg1c+foxg1d motif

Sorted Z-values of foxg1a+foxg1c+foxg1d motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr17_-_4252221 0.56 ENSDART00000152020
gdf3
growth differentiation factor 3
chr5_+_37720777 0.54 ENSDART00000076083
cdc42ep2
CDC42 effector protein (Rho GTPase binding) 2
chr3_+_28860283 0.41 ENSDART00000077235
alg1
ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase
chr24_+_18286427 0.39 ENSDART00000055443
tpk1
thiamin pyrophosphokinase 1
chr3_-_31069776 0.34 ENSDART00000167462
elob
elongin B
chr2_-_1486023 0.32 ENSDART00000113774
si:ch211-188c16.1
si:ch211-188c16.1
chr18_-_34170918 0.31 ENSDART00000015079
slc33a1
solute carrier family 33 (acetyl-CoA transporter), member 1
chr18_+_20482369 0.30 ENSDART00000100668
kbtbd4
kelch repeat and BTB (POZ) domain containing 4
chr18_-_34171280 0.29 ENSDART00000122321
slc33a1
solute carrier family 33 (acetyl-CoA transporter), member 1
chr20_-_14665002 0.29 ENSDART00000152816
scrn2
secernin 2
chr24_-_37640705 0.27 ENSDART00000066583
zgc:112496
zgc:112496
chr19_-_8096984 0.26 ENSDART00000146987
si:dkey-266f7.9
si:dkey-266f7.9
chr1_-_46875493 0.25 ENSDART00000115081
agpat3
1-acylglycerol-3-phosphate O-acyltransferase 3
chr4_+_14343706 0.16 ENSDART00000142845
prl2
prolactin 2
chr24_+_37640626 0.16 ENSDART00000008047
wdr24
WD repeat domain 24
chr8_+_19621511 0.16 ENSDART00000017128
slc35a3a
solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3a
chr7_+_9189547 0.15 ENSDART00000169783
pcsk6
proprotein convertase subtilisin/kexin type 6
chr18_+_18104235 0.15 ENSDART00000145342
cbln1
cerebellin 1 precursor
chr8_+_19621731 0.14 ENSDART00000144667
slc35a3a
solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3a
chr1_-_50710468 0.14 ENSDART00000080389
fam13a
family with sequence similarity 13, member A
chr5_+_22791686 0.14 ENSDART00000014806
npas2
neuronal PAS domain protein 2
chr15_-_16155729 0.13 ENSDART00000192212
si:ch211-259g3.4
si:ch211-259g3.4
chr19_-_11949996 0.12 ENSDART00000163478
ENSDART00000167299
cpsf1
cleavage and polyadenylation specific factor 1
chr11_+_13058613 0.12 ENSDART00000161532
zfyve9b
zinc finger, FYVE domain containing 9b
chr16_-_33806390 0.11 ENSDART00000160671
rspo1
R-spondin 1
chr5_+_60934534 0.10 ENSDART00000065025
rph3al
rabphilin 3A-like (without C2 domains)
chr17_-_11439815 0.09 ENSDART00000130105
psma3
proteasome subunit alpha 3
chr10_+_29850330 0.09 ENSDART00000168898
hspa8
heat shock protein 8
chr15_-_8763106 0.08 ENSDART00000154171
arhgap35a
Rho GTPase activating protein 35a
chr10_+_29849977 0.08 ENSDART00000180242
hspa8
heat shock protein 8
chr3_+_23248542 0.08 ENSDART00000185765
ENSDART00000192332
ppp1r9ba
protein phosphatase 1, regulatory subunit 9Ba
chr19_-_19025998 0.08 ENSDART00000186156
ENSDART00000163359
ENSDART00000167951
dync1li1
dynein, cytoplasmic 1, light intermediate chain 1
chr20_-_54564018 0.08 ENSDART00000099832
zgc:153012
zgc:153012
chr19_-_22541284 0.08 ENSDART00000019505
pleca
plectin a
chr24_+_19591893 0.07 ENSDART00000152026
slco5a1a
solute carrier organic anion transporter family member 5A1a
chr4_+_3980247 0.07 ENSDART00000049194
gpr37b
G protein-coupled receptor 37b
chr11_-_42739148 0.06 ENSDART00000183584
CU459094.2

chr2_-_7246338 0.06 ENSDART00000186735
zgc:153115
zgc:153115
chr18_-_44935174 0.05 ENSDART00000081025
pex16
peroxisomal biogenesis factor 16
chr16_-_18702249 0.05 ENSDART00000191595
fhod3b
formin homology 2 domain containing 3b
chr24_-_36316104 0.05 ENSDART00000048046
naglu
N-acetylglucosaminidase, alpha
chr14_+_12316581 0.05 ENSDART00000170115
ENSDART00000149757
si:ch211-125c23.3
cx31.7
si:ch211-125c23.3
connexin 31.7
chr17_-_15657029 0.04 ENSDART00000153925
fut9a
fucosyltransferase 9a
chr25_-_16768078 0.04 ENSDART00000025186
galnt8a.1
polypeptide N-acetylgalactosaminyltransferase 8a, tandem duplicate 1
chr12_+_39685485 0.04 ENSDART00000163403
LO017650.1

chr20_+_34320635 0.04 ENSDART00000153207
ivns1abpa
influenza virus NS1A binding protein a
chr4_-_8902406 0.04 ENSDART00000192962
mpped1
metallophosphoesterase domain containing 1
chr2_+_30721466 0.03 ENSDART00000128982
si:dkey-94e7.2
si:dkey-94e7.2
chr2_+_35880600 0.03 ENSDART00000004277
lamc1
laminin, gamma 1
chr14_-_2361692 0.03 ENSDART00000167696
PCDHGC3 (1 of many)
si:ch73-233f7.4
chr15_-_30816370 0.03 ENSDART00000142982
ENSDART00000050649
ENSDART00000136901
ENSDART00000100194
msi2b
musashi RNA-binding protein 2b
chr11_+_583725 0.03 ENSDART00000189415
mkrn2os.2
MKRN2 opposite strand, tandem duplicate 2
chr11_-_26666501 0.02 ENSDART00000188067
ENSDART00000111539
efcc1
EF-hand and coiled-coil domain containing 1
chr1_+_59090583 0.02 ENSDART00000150658
mfap4
microfibril associated protein 4
chr7_-_51953613 0.02 ENSDART00000142042
cyp2x10.2
cytochrome P450, family 2, subfamily X, polypeptide 10.2
chr2_-_59345920 0.02 ENSDART00000134662
ftr37
finTRIM family, member 37
chr18_-_5509616 0.02 ENSDART00000142945
bloc1s6
biogenesis of lysosomal organelles complex-1, subunit 6, pallidin
chr7_-_51953807 0.02 ENSDART00000174102
ENSDART00000145645
ENSDART00000052054
cyp2x10.2
cytochrome P450, family 2, subfamily X, polypeptide 10.2
chr1_+_59090743 0.02 ENSDART00000100199
mfap4
microfibril associated protein 4
chr25_+_21267579 0.02 ENSDART00000152015
fgl2b
fibrinogen-like 2b
chr15_-_23522653 0.01 ENSDART00000144685
hmbsb
hydroxymethylbilane synthase, b
chr4_+_1283068 0.01 ENSDART00000167233
chrm2a
cholinergic receptor, muscarinic 2a
chr17_+_31719034 0.01 ENSDART00000077077
nubpl
nucleotide binding protein-like
chr2_+_30721070 0.01 ENSDART00000099052
si:dkey-94e7.2
si:dkey-94e7.2
chr2_-_59231017 0.00 ENSDART00000143980
ENSDART00000184190
ftr29
finTRIM family, member 29
chr3_-_4591643 0.00 ENSDART00000138144
ftr50
finTRIM family, member 50
chr24_-_6038025 0.00 ENSDART00000077819
ENSDART00000139216
ftr61
finTRIM family, member 61
chr25_-_16742438 0.00 ENSDART00000156091
galnt8a.1
polypeptide N-acetylgalactosaminyltransferase 8a, tandem duplicate 1
chr8_+_25616946 0.00 ENSDART00000133983
slc38a5a
solute carrier family 38, member 5a

Network of associatons between targets according to the STRING database.

First level regulatory network of foxg1a+foxg1c+foxg1d

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0009229 thiamine diphosphate biosynthetic process(GO:0009229)
0.1 0.6 GO:1900145 nodal signaling pathway involved in determination of left/right asymmetry(GO:0038107) regulation of nodal signaling pathway involved in determination of left/right asymmetry(GO:1900145)
0.1 0.5 GO:0031268 pseudopodium organization(GO:0031268) pseudopodium assembly(GO:0031269) regulation of pseudopodium assembly(GO:0031272) positive regulation of pseudopodium assembly(GO:0031274)
0.0 0.2 GO:1902946 positive regulation of receptor-mediated endocytosis(GO:0048260) protein localization to early endosome(GO:1902946)
0.0 0.3 GO:0015781 pyrimidine nucleotide-sugar transport(GO:0015781) pyrimidine nucleotide-sugar transmembrane transport(GO:0090481)
0.0 0.6 GO:0021955 central nervous system neuron axonogenesis(GO:0021955)
0.0 0.1 GO:0009794 regulation of mitotic cell cycle, embryonic(GO:0009794) mitotic cell cycle, embryonic(GO:0045448)
0.0 0.2 GO:0016486 peptide hormone processing(GO:0016486)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0030891 VCB complex(GO:0030891)
0.0 0.1 GO:1990513 CLOCK-BMAL transcription complex(GO:1990513)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0004788 thiamine diphosphokinase activity(GO:0004788) thiamine binding(GO:0030975)
0.1 0.6 GO:0051185 coenzyme transporter activity(GO:0051185)
0.1 0.3 GO:0070004 cysteine-type exopeptidase activity(GO:0070004)
0.0 0.3 GO:0005459 UDP-galactose transmembrane transporter activity(GO:0005459)
0.0 0.2 GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity(GO:0003841)
0.0 0.0 GO:0004653 polypeptide N-acetylgalactosaminyltransferase activity(GO:0004653)
0.0 0.4 GO:0000030 mannosyltransferase activity(GO:0000030)
0.0 0.2 GO:0044183 protein binding involved in protein folding(GO:0044183)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.6 REACTOME TRANSPORT OF VITAMINS NUCLEOSIDES AND RELATED MOLECULES Genes involved in Transport of vitamins, nucleosides, and related molecules
0.0 0.2 REACTOME SIGNALING BY NODAL Genes involved in Signaling by NODAL
0.0 0.2 REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION Genes involved in GABA synthesis, release, reuptake and degradation
0.0 0.4 REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
0.0 0.2 REACTOME SYNTHESIS OF PA Genes involved in Synthesis of PA