PRJNA438478: RNAseq of wild type zebrafish germline
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
figla | dr11_v1_chr5_-_13848296_13848296 | 0.46 | 5.4e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr7_+_58751504 Show fit | 3.27 |
ENSDART00000024185
|
zgc:56231 |
|
chr5_-_23696926 Show fit | 2.58 |
ENSDART00000021462
|
ring finger protein 128a |
|
chr15_+_38299385 Show fit | 2.56 |
ENSDART00000142403
|
si:dkey-24p1.6 |
|
chr10_-_25217347 Show fit | 2.42 |
ENSDART00000036906
|
karyopherin alpha 7 (importin alpha 8) |
|
chr15_+_38299563 Show fit | 2.40 |
ENSDART00000099375
|
si:dkey-24p1.6 |
|
chr7_+_57089354 Show fit | 2.28 |
ENSDART00000140702
|
secretory carrier membrane protein 2, like |
|
chr10_-_31805923 Show fit | 2.11 |
ENSDART00000077785
|
vacuolar protein sorting 26 homolog B, like |
|
chr5_+_57924611 Show fit | 2.11 |
ENSDART00000050949
|
B-cell translocation gene 4 |
|
chr13_-_21672131 Show fit | 1.96 |
ENSDART00000067537
|
ELOVL family member 6, elongation of long chain fatty acids like |
|
chr5_-_15494164 Show fit | 1.90 |
ENSDART00000140668
ENSDART00000188076 ENSDART00000085943 |
TAO kinase 3a |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 3.5 | GO:0000002 | mitochondrial genome maintenance(GO:0000002) |
0.0 | 3.2 | GO:0007018 | microtubule-based movement(GO:0007018) |
0.1 | 3.1 | GO:0030488 | tRNA methylation(GO:0030488) |
0.1 | 2.8 | GO:0071880 | adenylate cyclase-activating adrenergic receptor signaling pathway(GO:0071880) |
0.2 | 2.4 | GO:0006607 | NLS-bearing protein import into nucleus(GO:0006607) |
0.0 | 2.1 | GO:0042147 | retrograde transport, endosome to Golgi(GO:0042147) |
0.1 | 2.0 | GO:0019367 | fatty acid elongation, saturated fatty acid(GO:0019367) fatty acid elongation, unsaturated fatty acid(GO:0019368) fatty acid elongation, monounsaturated fatty acid(GO:0034625) fatty acid elongation, polyunsaturated fatty acid(GO:0034626) |
0.2 | 1.9 | GO:0006267 | pre-replicative complex assembly involved in nuclear cell cycle DNA replication(GO:0006267) pre-replicative complex assembly(GO:0036388) pre-replicative complex assembly involved in cell cycle DNA replication(GO:1902299) |
0.0 | 1.9 | GO:0032147 | activation of protein kinase activity(GO:0032147) |
0.2 | 1.8 | GO:0033206 | meiotic cytokinesis(GO:0033206) polar body extrusion after meiotic divisions(GO:0040038) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.7 | GO:0043296 | apical junction complex(GO:0043296) |
0.2 | 4.6 | GO:0032588 | trans-Golgi network membrane(GO:0032588) |
0.1 | 3.5 | GO:0005657 | replication fork(GO:0005657) |
0.0 | 3.0 | GO:0005770 | late endosome(GO:0005770) |
0.0 | 2.9 | GO:0005871 | kinesin complex(GO:0005871) |
0.2 | 2.1 | GO:0030904 | retromer complex(GO:0030904) |
0.1 | 2.1 | GO:0042555 | MCM complex(GO:0042555) |
0.1 | 2.0 | GO:0034993 | microtubule organizing center attachment site(GO:0034992) LINC complex(GO:0034993) |
0.0 | 2.0 | GO:0030141 | secretory granule(GO:0030141) |
0.0 | 1.8 | GO:0032154 | cleavage furrow(GO:0032154) cell surface furrow(GO:0097610) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.2 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.7 | 3.5 | GO:0043139 | 5'-3' DNA helicase activity(GO:0043139) |
0.4 | 2.9 | GO:0004937 | alpha1-adrenergic receptor activity(GO:0004937) |
0.0 | 2.9 | GO:0003777 | microtubule motor activity(GO:0003777) |
0.1 | 2.4 | GO:0061608 | nuclear import signal receptor activity(GO:0061608) |
0.1 | 2.4 | GO:0008175 | tRNA methyltransferase activity(GO:0008175) |
0.1 | 2.1 | GO:0015248 | sterol transporter activity(GO:0015248) |
0.1 | 2.1 | GO:0008569 | ATP-dependent microtubule motor activity, minus-end-directed(GO:0008569) |
0.1 | 2.0 | GO:0102336 | fatty acid elongase activity(GO:0009922) 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
0.4 | 1.9 | GO:0043140 | ATP-dependent 3'-5' DNA helicase activity(GO:0043140) single-stranded DNA-dependent ATP-dependent 3'-5' DNA helicase activity(GO:1990518) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.9 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.1 | 2.3 | PID ECADHERIN STABILIZATION PATHWAY | Stabilization and expansion of the E-cadherin adherens junction |
0.1 | 1.3 | PID GLYPICAN 1PATHWAY | Glypican 1 network |
0.0 | 1.2 | ST B CELL ANTIGEN RECEPTOR | B Cell Antigen Receptor |
0.0 | 1.0 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.0 | 0.9 | PID RAC1 PATHWAY | RAC1 signaling pathway |
0.0 | 0.6 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
0.0 | 0.5 | PID CDC42 REG PATHWAY | Regulation of CDC42 activity |
0.0 | 0.4 | PID ATM PATHWAY | ATM pathway |
0.0 | 0.4 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.3 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
0.0 | 1.5 | REACTOME LYSOSOME VESICLE BIOGENESIS | Genes involved in Lysosome Vesicle Biogenesis |
0.1 | 1.3 | REACTOME SIGNALING BY NODAL | Genes involved in Signaling by NODAL |
0.0 | 1.1 | REACTOME INTERFERON ALPHA BETA SIGNALING | Genes involved in Interferon alpha/beta signaling |
0.1 | 0.9 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
0.0 | 0.9 | REACTOME BRANCHED CHAIN AMINO ACID CATABOLISM | Genes involved in Branched-chain amino acid catabolism |
0.0 | 0.8 | REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS | Genes involved in Bile salt and organic anion SLC transporters |
0.0 | 0.7 | REACTOME CALNEXIN CALRETICULIN CYCLE | Genes involved in Calnexin/calreticulin cycle |
0.0 | 0.7 | REACTOME ANTIGEN ACTIVATES B CELL RECEPTOR LEADING TO GENERATION OF SECOND MESSENGERS | Genes involved in Antigen Activates B Cell Receptor Leading to Generation of Second Messengers |
0.0 | 0.6 | REACTOME HS GAG BIOSYNTHESIS | Genes involved in HS-GAG biosynthesis |