PRJNA438478: RNAseq of wild type zebrafish germline

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
dlx5a Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000042296	distal-less homeobox 5a

Gene	Promoter	Pearson corr. coef.	P-value	Plot
dlx5a	dr11_v1_chr19_-_41472228_41472228	-0.23	3.6e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr16_-_42056137 Show fit	0.42	ENSDART00000102798	zp3d.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zona pellucida glycoprotein 3d tandem duplicate 2
chr2_+_6253246 Show fit	0.39	ENSDART00000058256 ENSDART00000076700	zp3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zona pellucida glycoprotein 3b
chr5_-_27867657 Show fit	0.30	ENSDART00000112495	tcima Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transcriptional and immune response regulator a
chr23_+_31913292 Show fit	0.29	ENSDART00000136910	armc1l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	armadillo repeat containing 1, like
chr23_+_31912882 Show fit	0.26	ENSDART00000140505	armc1l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	armadillo repeat containing 1, like
chr10_-_26512742 Show fit	0.25	ENSDART00000135951	si:dkey-5g14.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-5g14.1
chr2_-_23004286 Show fit	0.24	ENSDART00000134664 ENSDART00000110373 ENSDART00000185833 ENSDART00000187235	znf414 Links NCBI UniProt ZFIN ENSEMBL Google Show fit mllt1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger protein 414 MLLT1, super elongation complex subunit b
chr10_+_19596214 Show fit	0.23	ENSDART00000183110	CABZ01059626.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr1_-_13989643 Show fit	0.23	ENSDART00000191046	elf2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	E74-like factor 2b (ets domain transcription factor)
chr10_-_26512993 Show fit	0.22	ENSDART00000188549 ENSDART00000193316	si:dkey-5g14.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-5g14.1
chr19_+_15521997 Show fit	0.19	ENSDART00000003164	ppp1r8a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein phosphatase 1, regulatory subunit 8a
chr20_+_14114258 Show fit	0.18	ENSDART00000044937	kcns3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3b
chr19_-_27336092 Show fit	0.17	ENSDART00000176885	gtf2h4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	general transcription factor IIH, polypeptide 4
chr19_-_28283844 Show fit	0.17	ENSDART00000151756 ENSDART00000079104	ndufs6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	NADH dehydrogenase (ubiquinone) Fe-S protein 6
chr3_+_17537352 Show fit	0.15	ENSDART00000104549	hcrt Links NCBI UniProt ZFIN ENSEMBL Google Show fit	hypocretin (orexin) neuropeptide precursor
chr10_-_35149513 Show fit	0.15	ENSDART00000063434 ENSDART00000131291	ripk4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	receptor-interacting serine-threonine kinase 4
chr9_+_13229585 Show fit	0.12	ENSDART00000154879 ENSDART00000141705	carf Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calcium responsive transcription factor
chr20_-_47188966 Show fit	0.11	ENSDART00000152965	si:dkeyp-104f11.9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkeyp-104f11.9
chr23_+_44374041 Show fit	0.10	ENSDART00000136056	ephb4b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	eph receptor B4b
chr19_+_5480327 Show fit	0.10	ENSDART00000148794	jupb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	junction plakoglobin b
chr20_-_14114078 Show fit	0.10	ENSDART00000168434 ENSDART00000104032	si:ch211-223m11.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-223m11.2
chr10_+_2529037 Show fit	0.09	ENSDART00000123467	zmp:0000001301 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zmp:0000001301
chr15_+_15856178 Show fit	0.09	ENSDART00000080338	dusp14 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	dual specificity phosphatase 14
chr7_-_40110140 Show fit	0.09	ENSDART00000173469	si:ch73-174h16.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-174h16.5
chr23_+_34990693 Show fit	0.09	ENSDART00000013449	CHST13 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-236h17.3
chr20_+_39457598 Show fit	0.08	ENSDART00000140931 ENSDART00000156176	pimr128 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim proto-oncogene, serine/threonine kinase, related 128
chr1_-_53277413 Show fit	0.08	ENSDART00000150579	znf330 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger protein 330
chr20_+_46513651 Show fit	0.08	ENSDART00000152977	zc3h14 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger CCCH-type containing 14
chr19_-_205104 Show fit	0.08	ENSDART00000011890	zbtb22a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zinc finger and BTB domain containing 22a
chr2_+_11205795 Show fit	0.08	ENSDART00000019078	lhx8a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	LIM homeobox 8a
chr16_+_54263921 Show fit	0.08	ENSDART00000002856	drd2l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	dopamine receptor D2 like
chr18_+_11970987 Show fit	0.07	ENSDART00000144111	si:dkeyp-2c8.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkeyp-2c8.3
chr16_+_42471455 Show fit	0.07	ENSDART00000166640	si:ch211-215k15.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-215k15.5
chr11_+_30057762 Show fit	0.07	ENSDART00000164139	nhsb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Nance-Horan syndrome b (congenital cataracts and dental anomalies)
chr10_-_40968095 Show fit	0.07	ENSDART00000184104	npffr1l1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neuropeptide FF receptor 1 like 1
chr12_+_1469090 Show fit	0.06	ENSDART00000183637	usp22 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ubiquitin specific peptidase 22
chr2_-_17694504 Show fit	0.06	ENSDART00000133709	ptprfb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein tyrosine phosphatase, receptor type, f, b
chr19_+_19512515 Show fit	0.06	ENSDART00000180065	jazf1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	JAZF zinc finger 1a
chr4_-_63848305 Show fit	0.05	ENSDART00000097308	BX901974.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr15_-_44512461 Show fit	0.05	ENSDART00000155456	gria4a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glutamate receptor, ionotropic, AMPA 4a
chr4_-_11577253 Show fit	0.05	ENSDART00000144452	net1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neuroepithelial cell transforming 1
chr3_-_23643751 Show fit	0.05	ENSDART00000078425 ENSDART00000140264	eve1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	even-skipped-like1
chr24_-_39637418 Show fit	0.05	ENSDART00000142522	fam234a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	family with sequence similarity 234, member A
chr7_+_69019851 Show fit	0.04	ENSDART00000162891	CABZ01057488.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr21_+_6751405 Show fit	0.04	ENSDART00000037265 ENSDART00000146371	olfm1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	olfactomedin 1b
chr19_+_712127 Show fit	0.04	ENSDART00000093281 ENSDART00000180002 ENSDART00000146050	fhod3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	formin homology 2 domain containing 3a
chr1_-_17715493 Show fit	0.04	ENSDART00000133027	si:dkey-256e7.8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-256e7.8
chr5_+_66433287 Show fit	0.04	ENSDART00000170757	kntc1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	kinetochore associated 1
chr6_+_3680651 Show fit	0.04	ENSDART00000013588	klhl41b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	kelch-like family member 41b
chr21_+_6751760 Show fit	0.04	ENSDART00000135914	olfm1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	olfactomedin 1b
chr9_-_49964810 Show fit	0.04	ENSDART00000167098	scn1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sodium channel, voltage-gated, type I, alpha
chr7_-_25895189 Show fit	0.04	ENSDART00000173599 ENSDART00000079235 ENSDART00000173786 ENSDART00000173602 ENSDART00000079245 ENSDART00000187568 ENSDART00000173505	cd99l2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	CD99 molecule-like 2
chr25_-_18953322 Show fit	0.04	ENSDART00000155927	si:ch211-68a17.7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-68a17.7
chr5_-_7829657 Show fit	0.03	ENSDART00000158374	pdlim5a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PDZ and LIM domain 5a
chr4_+_306036 Show fit	0.03	ENSDART00000103659	msgn1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mesogenin 1
chr6_-_6487876 Show fit	0.03	ENSDART00000137642	cep170ab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	centrosomal protein 170Ab
chr3_+_26019426 Show fit	0.03	ENSDART00000135389 ENSDART00000182411	foxred2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	FAD-dependent oxidoreductase domain containing 2
chr15_+_1796313 Show fit	0.03	ENSDART00000126253	fam124b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	family with sequence similarity 124B
chr15_-_31067589 Show fit	0.03	ENSDART00000060157	lgals9l3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lectin, galactoside-binding, soluble, 9 (galectin 9)-like 3
chr16_-_31525290 Show fit	0.03	ENSDART00000109996	wisp1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	WNT1 inducible signaling pathway protein 1b
chr19_+_4800549 Show fit	0.03	ENSDART00000056235	st3gal1l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ST3 beta-galactoside alpha-2,3-sialyltransferase 1, like
chr16_+_45425181 Show fit	0.03	ENSDART00000168591	phf1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PHD finger protein 1
chr8_-_27656765 Show fit	0.02	ENSDART00000078491	mov10b.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Moloney leukemia virus 10b, tandem duplicate 2
chr17_+_41343167 Show fit	0.02	ENSDART00000156405	mocs1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	molybdenum cofactor synthesis 1
chr20_-_2949028 Show fit	0.02	ENSDART00000104667 ENSDART00000193151 ENSDART00000131946	cdk19 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cyclin-dependent kinase 19
chr11_+_23760470 Show fit	0.02	ENSDART00000175688 ENSDART00000121874 ENSDART00000086720	nfasca Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neurofascin homolog (chicken) a
chr16_+_45424907 Show fit	0.02	ENSDART00000134471	phf1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	PHD finger protein 1
chr7_-_69647988 Show fit	0.02	ENSDART00000169943	LO018231.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr25_-_34632050 Show fit	0.02	ENSDART00000170671	megf8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	multiple EGF-like-domains 8
chr23_+_40460333 Show fit	0.02	ENSDART00000184658	soga3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SOGA family member 3b
chr18_+_50461981 Show fit	0.02	ENSDART00000158761	CU896640.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr24_-_31843173 Show fit	0.02	ENSDART00000185782	steap2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	STEAP family member 2, metalloreductase
chr2_+_38370535 Show fit	0.02	ENSDART00000179614	psmb11a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	proteasome subunit beta 11a
chr3_-_21397304 Show fit	0.02	ENSDART00000189794	CT573446.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr3_-_46817499 Show fit	0.02	ENSDART00000013717	elavl3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ELAV like neuron-specific RNA binding protein 3
chr17_-_20717845 Show fit	0.01	ENSDART00000150037	ank3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ankyrin 3b
chr2_-_10896745 Show fit	0.01	ENSDART00000114609	cdcp2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	CUB domain containing protein 2
chr18_+_43891051 Show fit	0.01	ENSDART00000024213	cxcr5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chemokine (C-X-C motif) receptor 5
chr4_-_5795309 Show fit	0.01	ENSDART00000039987	pgm3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	phosphoglucomutase 3
chr7_+_29955368 Show fit	0.01	ENSDART00000173686	tpma Links NCBI UniProt ZFIN ENSEMBL Google Show fit	alpha-tropomyosin
chr11_-_6188413 Show fit	0.01	ENSDART00000109972	ccl44 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	chemokine (C-C motif) ligand 44
chr24_+_7336411 Show fit	0.01	ENSDART00000191170	kmt2ca Links NCBI UniProt ZFIN ENSEMBL Google Show fit	lysine (K)-specific methyltransferase 2Ca
chr25_-_18913336 Show fit	0.01	ENSDART00000171010	parietopsin Links NCBI UniProt ZFIN ENSEMBL Google Show fit	parietopsin
chr8_-_52413032 Show fit	0.01	ENSDART00000183039	CABZ01070469.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr4_-_75681004 Show fit	0.01	ENSDART00000186296	si:dkey-71l4.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-71l4.5
chr18_+_32444636 Show fit	0.01	ENSDART00000164223	v2ra1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	vomeronasal 2 receptor, a1
chr13_+_24829996 Show fit	0.01	ENSDART00000147194	si:ch211-223p8.8 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-223p8.8
chr4_-_32466676 Show fit	0.01	ENSDART00000193347 ENSDART00000169396 ENSDART00000145784	si:dkey-16p6.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-16p6.1
chr15_+_9053059 Show fit	0.01	ENSDART00000012039	ppm1na Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protein phosphatase, Mg2+/Mn2+ dependent, 1Na (putative)
chr4_-_32466449 Show fit	0.01	ENSDART00000192050	si:dkey-16p6.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-16p6.1
chr5_-_30620625 Show fit	0.00	ENSDART00000098273	tcnl Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transcobalamin like
chr4_-_71152937 Show fit	0.00	ENSDART00000191017	si:dkey-193i10.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-193i10.4
chr18_+_28106139 Show fit	0.00	ENSDART00000089615	kiaa1549lb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	KIAA1549-like b
chr22_-_6988102 Show fit	0.00	ENSDART00000185618	fgfr1bl Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fibroblast growth factor receptor 1b, like
chr4_-_71153608 Show fit	0.00	ENSDART00000190144 ENSDART00000158406	si:dkey-193i10.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-193i10.4
chr19_-_5265155 Show fit	0.00	ENSDART00000145003	prf1.3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	perforin 1.3
chr16_+_31804590 Show fit	0.00	ENSDART00000167321	wnt4b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	wingless-type MMTV integration site family, member 4b
chr1_+_40199074 Show fit	0.00	ENSDART00000179679 ENSDART00000136849	si:ch211-113e8.5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-113e8.5

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.8	GO:2000344	binding of sperm to zona pellucida(GO:0007339) egg coat formation(GO:0035803) regulation of acrosome reaction(GO:0060046) positive regulation of acrosome reaction(GO:2000344)
0.0	0.1	GO:0061400	positive regulation of transcription from RNA polymerase II promoter in response to calcium ion(GO:0061400)
0.0	0.2	GO:0042755	eating behavior(GO:0042755)
0.0	0.1	GO:0031441	negative regulation of mRNA 3'-end processing(GO:0031441) negative regulation of mRNA polyadenylation(GO:1900364)
0.0	0.1	GO:0002159	desmosome assembly(GO:0002159)
0.0	0.0	GO:0048340	paraxial mesoderm morphogenesis(GO:0048340) paraxial mesoderm formation(GO:0048341)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0000439	core TFIIH complex(GO:0000439)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.8	GO:0032190	acrosin binding(GO:0032190)
0.0	0.2	GO:0004865	protein serine/threonine phosphatase inhibitor activity(GO:0004865)
0.0	0.3	GO:0005112	Notch binding(GO:0005112)
0.0	0.1	GO:0045294	alpha-catenin binding(GO:0045294)