Project

PRJNA438478: RNAseq of wild type zebrafish germline

Navigation
Downloads

Results for dlx3b

Z-value: 0.41

Motif logo

logo of

Transcription factors associated with dlx3b

Gene Symbol Gene ID Gene Info
dlx3b
ENSDARG00000014626 distal-less homeobox 3b

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
dlx3bdr11_v1_chr12_+_5708400_57084000.663.0e-03Click!

Activity profile of dlx3b motif

Sorted Z-values of dlx3b motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr21_+_25777425 1.82 ENSDART00000021620
cldnd
claudin d
chr24_-_17029374 0.90 ENSDART00000039267
ptgdsb.1
prostaglandin D2 synthase b, tandem duplicate 1
chr11_-_44801968 0.85 ENSDART00000161846
map1lc3c
microtubule-associated protein 1 light chain 3 gamma
chr4_+_13586689 0.79 ENSDART00000067161
ENSDART00000138201
tnpo3
transportin 3
chr5_+_26213874 0.76 ENSDART00000193816
ENSDART00000098514
oclnb
occludin b
chr16_+_39159752 0.76 ENSDART00000122081
sybu
syntabulin (syntaxin-interacting)
chr24_-_17023392 0.75 ENSDART00000106058
ptgdsb.2
prostaglandin D2 synthase b, tandem duplicate 2
chr3_-_26183699 0.72 ENSDART00000147517
ENSDART00000140731
si:ch211-11k18.4
si:ch211-11k18.4
chr15_-_33172246 0.72 ENSDART00000158666
nbeab
neurobeachin b
chr12_-_35386910 0.66 ENSDART00000153453
camk2g1
calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma 1
chr11_-_39118882 0.59 ENSDART00000113185
ENSDART00000156526
ap5b1
adaptor-related protein complex 5, beta 1 subunit
chr10_-_21362071 0.54 ENSDART00000125167
avd
avidin
chr19_+_20793237 0.52 ENSDART00000014774
txnl4a
thioredoxin-like 4A
chr17_+_16046314 0.52 ENSDART00000154554
ENSDART00000154338
ENSDART00000155336
si:ch73-204p21.2
si:ch73-204p21.2
chr19_+_20793388 0.50 ENSDART00000142463
txnl4a
thioredoxin-like 4A
chr10_-_21362320 0.50 ENSDART00000189789
avd
avidin
chr6_-_40713183 0.48 ENSDART00000157113
ENSDART00000154810
ENSDART00000153702
si:ch211-157b11.12
si:ch211-157b11.12
chr19_+_46158078 0.47 ENSDART00000183933
ENSDART00000164055
cap2
CAP, adenylate cyclase-associated protein, 2 (yeast)
chr17_-_15546862 0.43 ENSDART00000091021
col10a1a
collagen, type X, alpha 1a
chr4_+_13586455 0.43 ENSDART00000187230
tnpo3
transportin 3
chr12_-_18577983 0.41 ENSDART00000193262
zdhhc4
zinc finger, DHHC-type containing 4
chr17_+_16046132 0.41 ENSDART00000155005
si:ch73-204p21.2
si:ch73-204p21.2
chr2_-_15324837 0.40 ENSDART00000015655
tecrl2b
trans-2,3-enoyl-CoA reductase-like 2b
chr8_-_15129573 0.40 ENSDART00000142358
bcar3
BCAR3, NSP family adaptor protein
chr8_-_23780334 0.40 ENSDART00000145179
ENSDART00000145894
zgc:195245
zgc:195245
chr2_+_2168547 0.38 ENSDART00000029347
higd1a
HIG1 hypoxia inducible domain family, member 1A
chr5_+_59234421 0.37 ENSDART00000045518
prkrip1
PRKR interacting protein 1
chr4_+_9177997 0.36 ENSDART00000057254
ENSDART00000154614
nfyba
nuclear transcription factor Y, beta a
chr11_-_40147032 0.35 ENSDART00000052918
si:dkey-264d12.4
si:dkey-264d12.4
chr19_-_19871211 0.35 ENSDART00000170980
evx1
even-skipped homeobox 1
chr8_+_28452738 0.35 ENSDART00000062706
tmem189
transmembrane protein 189
chr13_+_38814521 0.32 ENSDART00000110976
col19a1
collagen, type XIX, alpha 1
chr22_-_14262115 0.31 ENSDART00000168264
si:ch211-246m6.5
si:ch211-246m6.5
chr11_+_31864921 0.30 ENSDART00000180252
diaph3
diaphanous-related formin 3
chr11_+_18873619 0.29 ENSDART00000176141
magi1b
membrane associated guanylate kinase, WW and PDZ domain containing 1b
chr8_-_39822917 0.29 ENSDART00000067843
zgc:162025
zgc:162025
chr17_+_49500820 0.29 ENSDART00000170306
AREL1
apoptosis resistant E3 ubiquitin protein ligase 1
chr25_+_28555584 0.29 ENSDART00000157046
SLC15A5
si:ch211-190o6.3
chr16_-_13623659 0.29 ENSDART00000168978
si:dkeyp-69b9.6
si:dkeyp-69b9.6
chr23_-_18130264 0.28 ENSDART00000016976
nucks1b
nuclear casein kinase and cyclin-dependent kinase substrate 1b
chrM_+_9052 0.28 ENSDART00000093612
mt-atp6
ATP synthase 6, mitochondrial
chr24_-_25004553 0.27 ENSDART00000080997
ENSDART00000136860
zdhhc20b
zinc finger, DHHC-type containing 20b
chr19_-_8768564 0.27 ENSDART00000170416
si:ch73-350k19.1
si:ch73-350k19.1
chr6_-_50203682 0.26 ENSDART00000083999
ENSDART00000143050
raly
RALY heterogeneous nuclear ribonucleoprotein
chr3_+_32832538 0.26 ENSDART00000139410
cd2bp2
CD2 (cytoplasmic tail) binding protein 2
chr15_-_18115540 0.26 ENSDART00000131639
ENSDART00000047902
arcn1b
archain 1b
chr22_-_3564563 0.26 ENSDART00000145114
ptprsa
protein tyrosine phosphatase, receptor type, s, a
chr2_-_28671139 0.26 ENSDART00000165272
ENSDART00000164657
dhcr7
7-dehydrocholesterol reductase
chr19_-_20403845 0.25 ENSDART00000151265
ENSDART00000147911
ENSDART00000151356
dazl
deleted in azoospermia-like
chr15_-_9272328 0.25 ENSDART00000172114
calm2a
calmodulin 2a (phosphorylase kinase, delta)
chr8_-_23776399 0.25 ENSDART00000114800
INAVA
si:ch211-163l21.4
chr20_+_28803977 0.25 ENSDART00000153351
ENSDART00000038149
fntb
farnesyltransferase, CAAX box, beta
chr3_-_21280373 0.24 ENSDART00000003939
syngr1a
synaptogyrin 1a
chr16_-_21620947 0.24 ENSDART00000115011
ENSDART00000183125
ENSDART00000188856
ENSDART00000189460
ddr1
discoidin domain receptor tyrosine kinase 1
chr7_-_69298271 0.23 ENSDART00000122935
phlpp2
PH domain and leucine rich repeat protein phosphatase 2
chr8_-_5847533 0.23 ENSDART00000192489
CABZ01102147.1

chr13_+_38817871 0.23 ENSDART00000187708
col19a1
collagen, type XIX, alpha 1
chr1_+_37752171 0.22 ENSDART00000183247
ENSDART00000189756
ENSDART00000139448
GALNTL6
si:ch211-15e22.3
chr14_-_32631013 0.22 ENSDART00000176815
atp11c
ATPase phospholipid transporting 11C
chr18_+_41232719 0.22 ENSDART00000138552
ENSDART00000145863
trip12
thyroid hormone receptor interactor 12
chr5_+_22067570 0.22 ENSDART00000045574
shisa2a
shisa family member 2a
chr10_-_2971407 0.21 ENSDART00000132526
marveld2a
MARVEL domain containing 2a
chr23_-_20051369 0.21 ENSDART00000049836
bgnb
biglycan b
chr4_+_14727018 0.21 ENSDART00000124189
cmasa
cytidine monophosphate N-acetylneuraminic acid synthetase a
chr16_-_13623928 0.21 ENSDART00000164344
si:dkeyp-69b9.6
si:dkeyp-69b9.6
chr24_+_1023839 0.20 ENSDART00000082526
zgc:111976
zgc:111976
chr14_+_23717165 0.19 ENSDART00000006373
ndfip1
Nedd4 family interacting protein 1
chr10_+_29199172 0.19 ENSDART00000148828
picalma
phosphatidylinositol binding clathrin assembly protein a
chr25_+_10410620 0.19 ENSDART00000151886
ehf
ets homologous factor
chr2_-_32826108 0.19 ENSDART00000098834
prpf4ba
pre-mRNA processing factor 4Ba
chr25_-_32869794 0.19 ENSDART00000162784
tmem266
transmembrane protein 266
chr21_-_26490186 0.18 ENSDART00000009889
zgc:110540
zgc:110540
chr19_-_32914227 0.18 ENSDART00000186115
ENSDART00000124246
mtdha
metadherin a
chr23_-_7799184 0.18 ENSDART00000190946
ENSDART00000165427
myt1b
myelin transcription factor 1b
chr4_+_14727212 0.18 ENSDART00000158094
cmasa
cytidine monophosphate N-acetylneuraminic acid synthetase a
chr8_-_31107537 0.18 ENSDART00000098925
vgll4l
vestigial like 4 like
chr16_-_29194517 0.17 ENSDART00000046114
ENSDART00000148899
mef2d
myocyte enhancer factor 2d
chr18_+_1837668 0.17 ENSDART00000164210
CABZ01079192.1

chr13_+_31205439 0.15 ENSDART00000132326
ptpn20
protein tyrosine phosphatase, non-receptor type 20
chr12_+_22580579 0.15 ENSDART00000171725
ENSDART00000192290
capgb
capping protein (actin filament), gelsolin-like b
chr5_+_63857055 0.13 ENSDART00000138950
rgs3b
regulator of G protein signaling 3b
chr11_-_29768054 0.12 ENSDART00000079117
plekha3
pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3
chr5_+_27525477 0.12 ENSDART00000051491
sfrp1a
secreted frizzled-related protein 1a
chr11_+_18873113 0.11 ENSDART00000103969
ENSDART00000103968
magi1b
membrane associated guanylate kinase, WW and PDZ domain containing 1b
chr23_+_30835589 0.10 ENSDART00000154145
npbwr2a
neuropeptides B/W receptor 2a
chr7_-_12464412 0.09 ENSDART00000178723
adamtsl3
ADAMTS-like 3
chr25_+_6471401 0.09 ENSDART00000132927
snx33
sorting nexin 33
chr12_+_25432627 0.09 ENSDART00000011662
ppm1bb
protein phosphatase, Mg2+/Mn2+ dependent, 1Bb
chr19_-_38830582 0.08 ENSDART00000189966
ENSDART00000183055
adgrb2
adhesion G protein-coupled receptor B2
chr15_-_755023 0.08 ENSDART00000155594
znf1011
zinc finger protein 1011
chr4_+_3980247 0.08 ENSDART00000049194
gpr37b
G protein-coupled receptor 37b
chr9_-_35633827 0.07 ENSDART00000077745
zp2l1
zona pellucida glycoprotein 2, like 1
chr16_-_22930925 0.07 ENSDART00000133819
si:dkey-246i14.3
si:dkey-246i14.3
chr2_-_26720854 0.07 ENSDART00000148110
si:dkey-181m9.8
si:dkey-181m9.8
chr9_-_3934963 0.06 ENSDART00000062336
ubr3
ubiquitin protein ligase E3 component n-recognin 3
chr20_+_13783040 0.06 ENSDART00000115329
ENSDART00000152497
lpgat1
lysophosphatidylglycerol acyltransferase 1
chr22_-_24284447 0.06 ENSDART00000149894
si:ch211-117l17.4
si:ch211-117l17.4
chr14_-_7207961 0.06 ENSDART00000167994
ENSDART00000166532
stox2b
storkhead box 2b
chr19_-_32641725 0.06 ENSDART00000165006
ENSDART00000188185
hpca
hippocalcin
chr24_+_36452927 0.05 ENSDART00000168181
zgc:114120
zgc:114120
chr18_-_37007294 0.05 ENSDART00000088309
map3k10
mitogen-activated protein kinase kinase kinase 10
chr18_-_19095141 0.05 ENSDART00000090962
ENSDART00000090922
dennd4a
DENN/MADD domain containing 4A
chr22_+_16308450 0.05 ENSDART00000105678
lrrc39
leucine rich repeat containing 39
chr20_+_23185530 0.05 ENSDART00000142346
lrrc66
leucine rich repeat containing 66
chr16_-_37415797 0.04 ENSDART00000188823
si:ch211-208k15.1
si:ch211-208k15.1
chr12_+_20412564 0.04 ENSDART00000186783
arhgap17a
Rho GTPase activating protein 17a
chr9_+_1313418 0.04 ENSDART00000191361
casp8l2
caspase 8, apoptosis-related cysteine peptidase, like 2
chr16_-_30903930 0.04 ENSDART00000143996
dennd3b
DENN/MADD domain containing 3b
chr7_+_30787903 0.03 ENSDART00000174000
apba2b
amyloid beta (A4) precursor protein-binding, family A, member 2b
chr23_+_26946744 0.03 ENSDART00000115141
cacnb3b
calcium channel, voltage-dependent, beta 3b
chr18_-_37007061 0.03 ENSDART00000136432
map3k10
mitogen-activated protein kinase kinase kinase 10
chr21_-_43949208 0.03 ENSDART00000150983
camk2a
calcium/calmodulin-dependent protein kinase II alpha
chr2_-_54946834 0.02 ENSDART00000192280
CABZ01086574.1

chr11_-_19775182 0.02 ENSDART00000037894
namptb
nicotinamide phosphoribosyltransferase b
chr11_-_39105253 0.02 ENSDART00000102827
p3h1
prolyl 3-hydroxylase 1
chr21_+_11244068 0.02 ENSDART00000163432
arid6
AT-rich interaction domain 6
chr21_+_15824182 0.02 ENSDART00000065779
gnrh2
gonadotropin-releasing hormone 2
chr9_-_32730487 0.02 ENSDART00000147795
olig1
oligodendrocyte transcription factor 1
chr4_-_11106856 0.02 ENSDART00000150764
BX784029.3

chr24_-_29963858 0.02 ENSDART00000183442
CR352310.1

chr4_-_75681004 0.02 ENSDART00000186296
si:dkey-71l4.5
si:dkey-71l4.5
chr15_-_37835638 0.02 ENSDART00000128922
si:dkey-238d18.3
si:dkey-238d18.3
chr7_-_54679595 0.02 ENSDART00000165320
ccnd1
cyclin D1
chr22_+_16308806 0.02 ENSDART00000162685
lrrc39
leucine rich repeat containing 39
chr5_-_51619742 0.01 ENSDART00000188537
otpb
orthopedia homeobox b
chr17_-_29192987 0.01 ENSDART00000164302
sptbn5
spectrin, beta, non-erythrocytic 5
chr22_-_7129631 0.01 ENSDART00000171359
asic1b
acid-sensing (proton-gated) ion channel 1b
chr9_+_11034314 0.01 ENSDART00000032695
asic4a
acid-sensing (proton-gated) ion channel family member 4a
chr9_-_44897553 0.01 ENSDART00000110697
dnajc10
DnaJ (Hsp40) homolog, subfamily C, member 10
chr20_-_27225876 0.00 ENSDART00000149204
ENSDART00000149732
si:dkey-85n7.7
si:dkey-85n7.7
chr7_-_17591007 0.00 ENSDART00000171023
CU672228.1

chr11_+_13224281 0.00 ENSDART00000102557
ENSDART00000178706
abcb11b
ATP-binding cassette, sub-family B (MDR/TAP), member 11b

Network of associatons between targets according to the STRING database.

First level regulatory network of dlx3b

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.
View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.8 GO:0016338 calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules(GO:0016338)
0.2 0.8 GO:0060074 synapse maturation(GO:0060074)
0.1 0.2 GO:0097067 cellular response to thyroid hormone stimulus(GO:0097067)
0.1 0.3 GO:0051645 Golgi localization(GO:0051645)
0.1 0.4 GO:0097250 mitochondrial respiratory chain supercomplex assembly(GO:0097250)
0.1 0.2 GO:0018343 protein farnesylation(GO:0018343)
0.0 0.2 GO:0003322 pancreatic A cell development(GO:0003322)
0.0 0.8 GO:0006995 cellular response to nitrogen starvation(GO:0006995) cellular response to nitrogen levels(GO:0043562)
0.0 0.3 GO:0060967 negative regulation of posttranscriptional gene silencing(GO:0060149) negative regulation of gene silencing by miRNA(GO:0060965) negative regulation of gene silencing by RNA(GO:0060967)
0.0 0.4 GO:0006054 N-acetylneuraminate metabolic process(GO:0006054)
0.0 0.2 GO:0033183 negative regulation of histone ubiquitination(GO:0033183) regulation of protein K63-linked ubiquitination(GO:1900044) negative regulation of protein K63-linked ubiquitination(GO:1900045) regulation of histone H2A K63-linked ubiquitination(GO:1901314) negative regulation of histone H2A K63-linked ubiquitination(GO:1901315) regulation of protein polyubiquitination(GO:1902914) negative regulation of protein polyubiquitination(GO:1902915)
0.0 0.3 GO:0060573 ventral spinal cord interneuron specification(GO:0021521) cell fate specification involved in pattern specification(GO:0060573)
0.0 1.2 GO:0030217 T cell differentiation(GO:0030217)
0.0 0.7 GO:0018230 peptidyl-L-cysteine S-palmitoylation(GO:0018230) peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine(GO:0018231)
0.0 0.3 GO:0021772 olfactory bulb development(GO:0021772) olfactory lobe development(GO:0021988) synaptic membrane adhesion(GO:0099560)
0.0 0.4 GO:0033138 positive regulation of peptidyl-serine phosphorylation(GO:0033138)
0.0 0.1 GO:0035627 ceramide transport(GO:0035627)
0.0 0.3 GO:0060061 Spemann organizer formation(GO:0060061)
0.0 0.5 GO:0019933 cAMP-mediated signaling(GO:0019933)
0.0 0.1 GO:0036149 phosphatidylinositol acyl-chain remodeling(GO:0036149)
0.0 0.6 GO:0072114 pronephros morphogenesis(GO:0072114)
0.0 0.2 GO:0030241 skeletal muscle myosin thick filament assembly(GO:0030241)
0.0 0.1 GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway(GO:0071596)
0.0 0.4 GO:0042761 very long-chain fatty acid biosynthetic process(GO:0042761)
0.0 0.3 GO:0015986 energy coupled proton transport, down electrochemical gradient(GO:0015985) ATP synthesis coupled proton transport(GO:0015986)
0.0 0.3 GO:0042446 hormone biosynthetic process(GO:0042446)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.3 GO:0005682 U5 snRNP(GO:0005682)
0.1 0.2 GO:0005965 protein farnesyltransferase complex(GO:0005965)
0.1 0.2 GO:0061689 tricellular tight junction(GO:0061689)
0.0 0.4 GO:0016602 CCAAT-binding factor complex(GO:0016602)
0.0 3.0 GO:0005923 bicellular tight junction(GO:0005923) occluding junction(GO:0070160)
0.0 0.8 GO:0000421 autophagosome membrane(GO:0000421)
0.0 0.3 GO:0030126 COPI vesicle coat(GO:0030126)
0.0 0.8 GO:0005881 cytoplasmic microtubule(GO:0005881)
0.0 0.2 GO:0098888 presynaptic endocytic zone(GO:0098833) presynaptic endocytic zone membrane(GO:0098835) extrinsic component of presynaptic membrane(GO:0098888) extrinsic component of presynaptic endocytic zone(GO:0098894)
0.0 0.6 GO:0030119 AP-type membrane coat adaptor complex(GO:0030119)
0.0 0.3 GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)(GO:0045263)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.0 GO:0009374 biotin binding(GO:0009374)
0.2 0.5 GO:0008179 adenylate cyclase binding(GO:0008179)
0.1 0.9 GO:0001972 retinoic acid binding(GO:0001972)
0.1 0.2 GO:0004660 protein farnesyltransferase activity(GO:0004660)
0.0 0.2 GO:0042809 vitamin D receptor binding(GO:0042809)
0.0 0.2 GO:0050699 WW domain binding(GO:0050699)
0.0 0.2 GO:0001223 transcription coactivator binding(GO:0001223)
0.0 0.4 GO:0070567 cytidylyltransferase activity(GO:0070567)
0.0 0.3 GO:0008494 translation activator activity(GO:0008494)
0.0 0.2 GO:0038062 protein tyrosine kinase collagen receptor activity(GO:0038062) collagen receptor activity(GO:0038064)
0.0 0.2 GO:0019136 deoxynucleoside kinase activity(GO:0019136)
0.0 0.6 GO:0019894 kinesin binding(GO:0019894)
0.0 0.1 GO:0035620 ceramide transporter activity(GO:0035620) ceramide 1-phosphate binding(GO:1902387) ceramide 1-phosphate transporter activity(GO:1902388)
0.0 0.7 GO:0019707 protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707)
0.0 0.2 GO:0005545 1-phosphatidylinositol binding(GO:0005545)
0.0 0.7 GO:0004683 calmodulin-dependent protein kinase activity(GO:0004683)
0.0 0.4 GO:0004860 protein kinase inhibitor activity(GO:0004860) kinase inhibitor activity(GO:0019210)
0.0 0.2 GO:0036312 phosphatidylinositol 3-kinase regulatory subunit binding(GO:0036312)
0.0 0.1 GO:0004985 opioid receptor activity(GO:0004985)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.5 NABA COLLAGENS Genes encoding collagen proteins

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.0 REACTOME MRNA SPLICING MINOR PATHWAY Genes involved in mRNA Splicing - Minor Pathway
0.0 0.5 REACTOME COLLAGEN FORMATION Genes involved in Collagen formation
0.0 0.3 REACTOME CHOLESTEROL BIOSYNTHESIS Genes involved in Cholesterol biosynthesis