PRJNA438478: RNAseq of wild type zebrafish germline

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
cxxc1b Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000025718	CXXC finger protein 1b
mbd1a Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000101205	methyl-CpG binding domain protein 1a
cxxc1a Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000101996	CXXC finger protein 1a
cxxc1b Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000111907	CXXC finger protein 1b

Gene	Promoter	Pearson corr. coef.	P-value	Plot
cxxc1a	dr11_v1_chr8_+_7854130_7854130	-0.85	9.3e-06	Click!
mbd1a	dr11_v1_chr8_+_7875110_7875142	-0.77	2.1e-04	Click!
cxxc1b	dr11_v1_chr11_+_25539698_25539698	0.20	4.4e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr3_-_19200571 Show fit	0.64	ENSDART00000131503 ENSDART00000012335	rfx1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	regulatory factor X, 1a (influences HLA class II expression)
chr18_+_1145571 Show fit	0.61	ENSDART00000135055	rec114 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	REC114 meiotic recombination protein
chr7_+_38509333 Show fit	0.29	ENSDART00000153482	slc7a9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 7 (amino acid transporter light chain, bo,+ system), member 9
chr11_-_438294 Show fit	0.28	ENSDART00000040812	nuf2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	NUF2, NDC80 kinetochore complex component, homolog
chr21_+_2721752 Show fit	0.26	ENSDART00000174953	CABZ01073424.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr11_-_438492 Show fit	0.25	ENSDART00000137121 ENSDART00000133784	nuf2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	NUF2, NDC80 kinetochore complex component, homolog
chr21_+_27448856 Show fit	0.24	ENSDART00000100784	cfbl Links NCBI UniProt ZFIN ENSEMBL Google Show fit	complement factor b-like
chr21_-_23746916 Show fit	0.11	ENSDART00000017229	ncam1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	neural cell adhesion molecule 1a
chr21_-_7781555 Show fit	0.09	ENSDART00000084380 ENSDART00000189131	aggf1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	angiogenic factor with G patch and FHA domains 1
chr17_+_3390772 Show fit	0.09	ENSDART00000160073	sntg2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	syntrophin, gamma 2
chr15_-_3940671 Show fit	0.08	ENSDART00000189741	mindy4b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	MINDY family member 4B
chr11_+_44579865 Show fit	0.06	ENSDART00000173425	nid1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nidogen 1b
chr21_+_29179887 Show fit	0.05	ENSDART00000161941	si:ch211-57b15.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-57b15.1
chr21_-_28901095 Show fit	0.03	ENSDART00000180820	cxxc5a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	CXXC finger protein 5a
chr22_-_6988102 Show fit	0.01	ENSDART00000185618	fgfr1bl Links NCBI UniProt ZFIN ENSEMBL Google Show fit	fibroblast growth factor receptor 1b, like

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.5	GO:0051315	attachment of mitotic spindle microtubules to kinetochore(GO:0051315)
0.0	0.1	GO:0021961	posterior commissure morphogenesis(GO:0021961)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.5	GO:0031262	Ndc80 complex(GO:0031262)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:1990380	Lys48-specific deubiquitinase activity(GO:1990380)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	REACTOME BASIGIN INTERACTIONS	Genes involved in Basigin interactions