PRJNA438478: RNAseq of wild type zebrafish germline

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
cux1a Links NCBI UniProt ZFIN ENSEMBL Google	ENSDARG00000078459	cut-like homeobox 1a

Gene	Promoter	Pearson corr. coef.	P-value	Plot
cux1a	dr11_v1_chr10_-_33156789_33156789	-0.54	2.2e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr12_-_7607114 Show fit	0.25	ENSDART00000158095	slc16a9b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 16, member 9b
chr18_+_7611298 Show fit	0.23	ENSDART00000062156	odf3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	outer dense fiber of sperm tails 3B
chr22_-_15562933 Show fit	0.21	ENSDART00000141528	ankmy1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ankyrin repeat and MYND domain containing 1
chr16_+_25126935 Show fit	0.18	ENSDART00000058945	zgc:92590 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:92590
chr17_+_12159529 Show fit	0.16	ENSDART00000046802	sccpdha Links NCBI UniProt ZFIN ENSEMBL Google Show fit	saccharopine dehydrogenase a
chr23_-_33986762 Show fit	0.15	ENSDART00000144609	tmed4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transmembrane p24 trafficking protein 4
chr12_+_48220584 Show fit	0.15	ENSDART00000164392	lrrc20 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	leucine rich repeat containing 20
chr22_+_29067388 Show fit	0.12	ENSDART00000133673	pimr100 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim proto-oncogene, serine/threonine kinase, related 100
chr25_-_6082509 Show fit	0.11	ENSDART00000104755	cpeb1a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cytoplasmic polyadenylation element binding protein 1a
chr15_+_36966369 Show fit	0.11	ENSDART00000163622	kirrel3l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	kirre like nephrin family adhesion molecule 3, like
chr5_-_13835461 Show fit	0.11	ENSDART00000148297 ENSDART00000114841	add2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adducin 2 (beta)
chr22_+_28969071 Show fit	0.10	ENSDART00000163427	pimr95 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	Pim proto-oncogene, serine/threonine kinase, related 95
chr2_+_7715810 Show fit	0.10	ENSDART00000130781	eif4a2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	eukaryotic translation initiation factor 4A, isoform 2
chr20_+_33875256 Show fit	0.09	ENSDART00000002554	rxrgb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	retinoid X receptor, gamma b
chr16_+_19014886 Show fit	0.09	ENSDART00000079298	si:ch211-254p10.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-254p10.2
chr25_-_35182347 Show fit	0.09	ENSDART00000115210	ano9a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	anoctamin 9a
chr11_-_12673637 Show fit	0.08	ENSDART00000186058	CR450764.7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr21_+_21012210 Show fit	0.08	ENSDART00000190317	ndr1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	nodal-related 1
chr18_+_5490668 Show fit	0.08	ENSDART00000167035	mibp2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	muscle-specific beta 1 integrin binding protein 2
chr22_+_13917311 Show fit	0.08	ENSDART00000022654	sh3bp4a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SH3-domain binding protein 4a
chrM_+_9735 Show fit	0.07	ENSDART00000093613	mt-co3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cytochrome c oxidase III, mitochondrial
chr11_-_12705608 Show fit	0.07	ENSDART00000158937 ENSDART00000114391	zgc:174353 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	zgc:174353
chr12_-_19091214 Show fit	0.07	ENSDART00000153225	si:ch73-139e5.4 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch73-139e5.4
chr20_-_54075136 Show fit	0.07	ENSDART00000074255	mgat2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
chr11_+_16152316 Show fit	0.07	ENSDART00000081054	tada3l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	transcriptional adaptor 3 (NGG1 homolog, yeast)-like
chr7_+_49272702 Show fit	0.06	ENSDART00000083389	abtb2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ankyrin repeat and BTB (POZ) domain containing 2a
chr8_+_48491387 Show fit	0.06	ENSDART00000086053	PRDM16 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-263k4.2
chr4_-_14915268 Show fit	0.06	ENSDART00000067040	si:dkey-180p18.9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-180p18.9
chr7_-_25895189 Show fit	0.06	ENSDART00000173599 ENSDART00000079235 ENSDART00000173786 ENSDART00000173602 ENSDART00000079245 ENSDART00000187568 ENSDART00000173505	cd99l2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	CD99 molecule-like 2
chr16_+_1383914 Show fit	0.06	ENSDART00000185089	cers2b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ceramide synthase 2b
chr7_+_29951997 Show fit	0.06	ENSDART00000173453	tpma Links NCBI UniProt ZFIN ENSEMBL Google Show fit	alpha-tropomyosin
chr4_-_25485404 Show fit	0.05	ENSDART00000041402	pfkfb3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
chr24_+_35881124 Show fit	0.05	ENSDART00000143015	klhl14 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	kelch-like family member 14
chr25_+_21324588 Show fit	0.05	ENSDART00000151842	lrrn3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	leucine rich repeat neuronal 3a
chr3_-_37082618 Show fit	0.05	ENSDART00000026701 ENSDART00000110716	tubg1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tubulin, gamma 1
chr22_+_34691020 Show fit	0.04	ENSDART00000192202	hykk.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	hydroxylysine kinase, tandem duplicate 1
chr10_-_11397590 Show fit	0.04	ENSDART00000064212	srek1ip1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	SREK1-interacting protein 1
chr6_-_29105727 Show fit	0.04	ENSDART00000184355	fam69ab Links NCBI UniProt ZFIN ENSEMBL Google Show fit	family with sequence similarity 69, member Ab
chr23_+_3721042 Show fit	0.04	ENSDART00000143323	smim29 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	small integral membrane protein 29
chr24_-_39826865 Show fit	0.04	ENSDART00000089232	slc12a7b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 12 (potassium/chloride transporter), member 7b
chr11_-_16152400 Show fit	0.04	ENSDART00000123665	arpc4l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	actin related protein 2/3 complex, subunit 4, like
chr23_-_44494401 Show fit	0.03	ENSDART00000114640 ENSDART00000148532	actl6b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	actin-like 6B
chr15_+_42626957 Show fit	0.03	ENSDART00000154754	grik1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glutamate receptor, ionotropic, kainate 1b
chr23_+_9353552 Show fit	0.03	ENSDART00000163298	BX511246.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr12_-_9700605 Show fit	0.03	ENSDART00000161063	heatr1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	HEAT repeat containing 1
chr16_+_4658250 Show fit	0.03	ENSDART00000006212	LIN28A Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch1073-284b18.2
chr3_-_5555500 Show fit	0.03	ENSDART00000176133 ENSDART00000057464	trim35-31 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	tripartite motif containing 35-31
chr11_-_16152105 Show fit	0.03	ENSDART00000081062	arpc4l Links NCBI UniProt ZFIN ENSEMBL Google Show fit	actin related protein 2/3 complex, subunit 4, like
chr17_+_53435279 Show fit	0.03	ENSDART00000126630	cx52.9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	connexin 52.9
chr21_+_17768174 Show fit	0.02	ENSDART00000141380	rxraa Links NCBI UniProt ZFIN ENSEMBL Google Show fit	retinoid X receptor, alpha a
chr1_-_49932040 Show fit	0.02	ENSDART00000048281	cyp2u1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	cytochrome P450, family 2, subfamily U, polypeptide 1
chr8_-_29851706 Show fit	0.02	ENSDART00000149297	slc20a2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 20 (phosphate transporter), member 2
chr23_-_24047054 Show fit	0.02	ENSDART00000184308 ENSDART00000185902	CR925720.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr1_+_55703120 Show fit	0.02	ENSDART00000141089	adgre6 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adhesion G protein-coupled receptor E6
chr14_-_25985698 Show fit	0.02	ENSDART00000172909 ENSDART00000123053	atox1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	antioxidant 1 copper chaperone
chr22_+_28446365 Show fit	0.02	ENSDART00000189359	abi3bpb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ABI family, member 3 (NESH) binding protein b
chr4_-_51460013 Show fit	0.02	ENSDART00000193382	CR628395.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr17_+_45454943 Show fit	0.02	ENSDART00000074838	kcnk3b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	potassium channel, subfamily K, member 3b
chr12_-_4185554 Show fit	0.02	ENSDART00000152313	si:dkey-32n7.7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:dkey-32n7.7
chr24_-_3407507 Show fit	0.01	ENSDART00000132648	nck1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	NCK adaptor protein 1b
chr17_+_11507131 Show fit	0.01	ENSDART00000013170	kif26ba Links NCBI UniProt ZFIN ENSEMBL Google Show fit	kinesin family member 26Ba
chr17_-_30839338 Show fit	0.01	ENSDART00000139707	gdf7 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	growth differentiation factor 7
chr17_+_48164536 Show fit	0.01	ENSDART00000161750 ENSDART00000156923	plekhd1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	pleckstrin homology domain containing, family D (with coiled-coil domains) member 1
chr3_-_38692920 Show fit	0.01	ENSDART00000155042	mpp3a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	membrane protein, palmitoylated 3a (MAGUK p55 subfamily member 3)
chr20_+_32406011 Show fit	0.01	ENSDART00000018640 ENSDART00000137910	snx3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	sorting nexin 3
chr3_-_31079186 Show fit	0.01	ENSDART00000145636 ENSDART00000140569	ELOB (1 of many) Links NCBI UniProt ZFIN ENSEMBL Google Show fit elob Links NCBI UniProt ZFIN ENSEMBL Google Show fit	elongin B elongin B
chr22_+_28446557 Show fit	0.01	ENSDART00000089546	abi3bpb Links NCBI UniProt ZFIN ENSEMBL Google Show fit	ABI family, member 3 (NESH) binding protein b
chr16_-_24561354 Show fit	0.01	ENSDART00000193278 ENSDART00000126274	si:ch211-79k12.2 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	si:ch211-79k12.2
chr2_-_56649883 Show fit	0.01	ENSDART00000191786	gpx4b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	glutathione peroxidase 4b
chr8_-_24135171 Show fit	0.01	ENSDART00000112926	adora1b Links NCBI UniProt ZFIN ENSEMBL Google Show fit	adenosine A1 receptor b
chr12_-_4540564 Show fit	0.00	ENSDART00000106566	CABZ01030107.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr16_-_17175731 Show fit	0.00	ENSDART00000183057	opn9 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	opsin 9
chr1_-_39976492 Show fit	0.00	ENSDART00000181680	stox2a Links NCBI UniProt ZFIN ENSEMBL Google Show fit	storkhead box 2a
chr15_-_16704417 Show fit	0.00	ENSDART00000155163	caln1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	calneuron 1
chr13_-_36264861 Show fit	0.00	ENSDART00000100204	slc8a3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	solute carrier family 8 (sodium/calcium exchanger), member 3
chr10_+_21786656 Show fit	0.00	ENSDART00000185851 ENSDART00000167219	pcdh1g26 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	protocadherin 1 gamma 26
chr11_-_20956309 Show fit	0.00	ENSDART00000188659	CABZ01008739.1 Links NCBI UniProt ZFIN ENSEMBL Google Show fit
chr16_-_12095144 Show fit	0.00	ENSDART00000145106	pex5 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	peroxisomal biogenesis factor 5
chr19_+_14059349 Show fit	0.00	ENSDART00000166230	tpbga Links NCBI UniProt ZFIN ENSEMBL Google Show fit	trophoblast glycoprotein a
chr14_-_33083539 Show fit	0.00	ENSDART00000160173	dlg3 Links NCBI UniProt ZFIN ENSEMBL Google Show fit	discs, large homolog 3 (Drosophila)

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0034260	negative regulation of GTPase activity(GO:0034260)
0.0	0.0	GO:0000212	meiotic spindle organization(GO:0000212)
0.0	0.1	GO:0034755	iron ion transmembrane transport(GO:0034755)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0044323	retinoic acid-responsive element binding(GO:0044323)
0.0	0.1	GO:0070698	type I activin receptor binding(GO:0070698)
0.0	0.1	GO:0050262	ribosylnicotinamide kinase activity(GO:0050262)